LOC103028140 (golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063)


Basic Information

Item Value
gene id LOC103028140
gene name golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14614391 ~ 14619388 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228175.2
ACTGTTGCGTCTGTGCGTGCTTCCGGAAGACGTGGCGATAGCTGAAATCAGTCGGTGCGGCGCTTTCCTCCGCTATCAGCAATCAGTCAGCGCGGAAACAAAGTTCACAGAGTGAAGATGATCTCCCTAACGGACTCCCAGAAGATCGGGATGGGTCTGACGGGCTTCGGCgtgttcttcctcttctttgGGATGATCCTGTTCTTTGATAAAGCTCTGCTGGCCATAGGGAATATCTTGTTTGTTGCAGGCCTCTCCTTCGTTATTGGACTGGAACGAACCTTCAGATTCTTTTTCCAGCGGCACAAAATGAAAGCTACAGGTTTCTTCCTGGGTGGCGTGTTTGTGGTGTTGATCGGGTGGCCAATCATCGGCGTGGTCCTGGAGGTTTATGGGTTCTTCCTTCTCTTTAgGGGCTTTTTCCCAGTCGCGGTCGGCTTTATTAGAAGAATACCAATTCTTGGATCACTGCTCAATCTCCCTGGAATAAGTGGTtTGGTGGATAAAGTTGGCGAGAGCAACACAATGGTATAACGgactttgaaatatttttcatcTTAGGAGTGATCGCCACTTATTTAAAGTTTTCAGCTGTACGCTGATGTATAATTTGATGCCCTTCTGGTAACACTCCCAGTGAATCTCAGACATGAGAAACTCTCATCTTTGAGAGGAGGTGGTGCTTTTATTGGGCACAAGTTGTTACCTATGGAGAGCTGTTATTTTTGGGAACTGATCCACCAGCCCAAATTGGGCCCAGTTATGTGGTTATTACTTTGCTTACCTCCATCATGGAGGTAACATGGACTTGTTGAACCAACAAAGGGCATATTTTGATTGACTGACTGTATAATCATGGCCCATTGGCCTGCTTCTTCTGAAAGGACTGCTACATTCACTATTTCTTTTGTACGCTGTTACATAGAGATCTCTTTAGGTTCTGTATGAAGGTGTTACTGGATCCTTGTGACGCTTTAAGGTGCCAACTGCTTTTTAAAGTGTGCTGTGTTGAATGTGTTACGAGTGCTTTAAACTGGACGAGCCACAACCCATCAACTCATTATGtcactccatttttttttttccagctcaGTCAATTAGTAGCCTTTGTGAAACACACACtttgtaaatatgtattttaaacaatgtataagactgctgtacatttttacatggAGAAAGCCACACTTTAATAAAACTTTCAATATCTGTA
>XM_007228176.3
TTCAGGGGGCGGCAGTTTGAATGAATGAGTGGTGATGGCTGGGCCTGCAGCAGCTCCGGGGCTAATTCACACCTCCTCCATATATACAGATACTATAGCTTCTCTCTAATTCAGACAGCTATTCCGACAGTCTCACATAACCTGCTTCTTCAGAGGGGATTCATCAGAGATCGGGATGGGTCTGACGGGCTTCGGCgtgttcttcctcttctttgGGATGATCCTGTTCTTTGATAAAGCTCTGCTGGCCATAGGGAATATCTTGTTTGTTGCAGGCCTCTCCTTCGTTATTGGACTGGAACGAACCTTCAGATTCTTTTTCCAGCGGCACAAAATGAAAGCTACAGGTTTCTTCCTGGGTGGCGTGTTTGTGGTGTTGATCGGGTGGCCAATCATCGGCGTGGTCCTGGAGGTTTATGGGTTCTTCCTTCTCTTTAgGGGCTTTTTCCCAGTCGCGGTCGGCTTTATTAGAAGAATACCAATTCTTGGATCACTGCTCAATCTCCCTGGAATAAGTGGTtTGGTGGATAAAGTTGGCGAGAGCAACACAATGGTATAACGgactttgaaatatttttcatcTTAGGAGTGATCGCCACTTATTTAAAGTTTTCAGCTGTACGCTGATGTATAATTTGATGCCCTTCTGGTAACACTCCCAGTGAATCTCAGACATGAGAAACTCTCATCTTTGAGAGGAGGTGGTGCTTTTATTGGGCACAAGTTGTTACCTATGGAGAGCTGTTATTTTTGGGAACTGATCCACCAGCCCAAATTGGGCCCAGTTATGTGGTTATTACTTTGCTTACCTCCATCATGGAGGTAACATGGACTTGTTGAACCAACAAAGGGCATATTTTGATTGACTGACTGTATAATCATGGCCCATTGGCCTGCTTCTTCTGAAAGGACTGCTACATTCACTATTTCTTTTGTACGCTGTTACATAGAGATCTCTTTAGGTTCTGTATGAAGGTGTTACTGGATCCTTGTGACGCTTTAAGGTGCCAACTGCTTTTTAAAGTGTGCTGTGTTGAATGTGTTACGAGTGCTTTAAACTGGACGAGCCACAACCCATCAACTCATTATGtcactccatttttttttttccagctcaGTCAATTAGTAGCCTTTGTGAAACACACACtttgtaaatatgtattttaaacaatgtataagactgctgtacatttttacatggAGAAAGCCACACTTTAATAAAACTTTCAATATCTGTA

Function

symbol description
golt1bb Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1B (golgi transport 1B).

NR:

description
PREDICTED: vesicle transport protein GOT1B-like

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228175.2 False 1213 mRNA 0.44 5 14614391 14619388
XM_007228176.3 True 1238 mRNA 0.43 5 14614391 14619171

Neighbor

gene id symbol gene type direction distance location
LOC103041151 NA coding downstream 35873 14574795 ~ 14578518 (-)
LOC103040849 LOC108428736,LOC104940688,LOC108274568 coding downstream 40170 14566910 ~ 14574221 (-)
cib1 cib1,kip1 coding downstream 59436 14550872 ~ 14554955 (-)
LOC103024229 LOC108428793 coding downstream 154003 14390685 ~ 14460388 (-)
pamr1 pamr1,LOC102307280,LOC107570358 coding downstream 650365 13920173 ~ 13964026 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding upstream 20613 14640001 ~ 14649251 (-)
LOC111193055 NA coding upstream 68301 14687689 ~ 14690107 (-)
prkar2b prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465 coding upstream 99166 14718554 ~ 14733253 (-)
mphosph6 mphosph6 coding upstream 203830 14823218 ~ 14826889 (-)
snx20 snx20 coding upstream 208016 14827404 ~ 14831477 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding downstream 8431 14597951 ~ 14605960 (-)
G73509 NA non-coding downstream 146250 14467622 ~ 14468141 (-)
G73491 NA non-coding downstream 337285 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 542353 14070499 ~ 14072038 (-)
G73432 NA non-coding downstream 576023 14038069 ~ 14038368 (-)
G73606 NA non-coding upstream 56493 14675881 ~ 14676858 (-)
G73617 dus2,LOC107555686 non-coding upstream 125782 14745170 ~ 14748658 (-)
G73622 NA non-coding upstream 137511 14756899 ~ 14757248 (-)
G73605 NA non-coding upstream 177967 14797355 ~ 14800633 (-)
G73639 NA non-coding upstream 184843 14804231 ~ 14805502 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 68855 14542196 ~ 14545536 (-)
G73172 NA other downstream 1993035 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2049413 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2562902 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 3069145 11520887 ~ 11545246 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 89670 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 504426 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 761941 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 1138915 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1847701 16467089 ~ 16470323 (-)

Expression


Co-expression Network