LOC103028647 (ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539)


Basic Information

Item Value
gene id LOC103028647
gene name ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14607589 ~ 14614390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228177.3
GAGGAGTGGAGTGGCTGAGACTCTGCCCTCCTCTCAGCTCTCACTTTCCCTGCTGCAGCTCTGAGGAAATGACTGGCTGGATGGCTCTGAGGGCACTGTGACACACTGCGACGCCACTGCCAAAGGACTGCAGCAGTCACCTGGTGTTATTCTTAGCTCCACTGTCATGCTGATTACATGGTGGTACTTATACCTGGGGGCTCAGAACATCTACAGACAAGtgtTGAACATGGCATCGGTGCTACAGAAGCTCCTCACCCCCCTGTTCAGTGGCCCCGCCGAGCCACCAAGGAACAAAGTGACAGTTGTAGGAGTGGGTCAAGTTGGCATGGCCTGTGCTGTCAGCATCTTGCTACGGGAGCTTGCTGATGAGCTAGCTCTGGTTGATGTGATGGAGGATAAGCTGAAAGGAGAGATGCTGGACCTGCAGCATGGAAGCCTGTTCCTCAAAACTCCTAAAATTGTCTCGGGCAAAGACTACTCAGTGACAGCAAACTCTCGCATTGTGGTGGTGACAGCAGGTGTGCGTCAACAGGAAGGTGAGAGCAGACTCAATCTGGTGCAGAGAAACGTCAACATCTTCAAACATATCATCCCTCAGATTGTGCGATACAGCCCCAACTGCATCCTCATTGTGGTGTCCAACCCAGTGGATATTTTGACGTACGTGACCTGGAAACTGAGCAGGCTCCCCAAACACCGTGTGATTGGCAGTGGCACTAACCTGGACTCGGCCCGCTTTCGCTACCTCATGGCAGAACGTCTGGGCATCCATCCCACTAGCTTCAATGGCTGGATCTTGGGAGAGCATGGTGACTCTAGTGTTCCTGTTTGGAGCGGCACGAACGTAGCAGGAGTCAGCCTGCAGAAACTGAACCCAGACATCGGCAAAGAAAATGACCGGGAGAACTGGAAGGAGACTCACAGGATGGTAGTTAATAGTGCCTATGAGGTGATCAGACTGAAAGGCTACACTAACTGGGCTATTGGACTGAGCGTAGCCGACCTGACAGAAAGCCTTATTAAAAATCTCAACAGAATCCACCCGGTCTCTACAATGGTGAAGGGCATGTATGGGATCAGTGATGAGGTATACCTCAGCCTGCCATGTGTGCTGAACAGCGGTGGTGTGAGCAGCGTGATCAACATGACTTTGAATCAGGATGAAGTGTCTCAGCTGAAGGACAGCGCTGACACGCTGTGGAACATTCAGAAGGACCTGAAAGATCTGTAACACACTTCAAACAGAGCGCACTTATTCACATCACCACATCAGACCAGCACCTGTAGTCGTAAAGTAGCTTTAGGAAGGAGTACTGATCCAGTCTTCTCCTCCTTCATTCATAATAATGCTAGTAAGGTGAAGGCAATACTGCTATTAATGCAGCACTTTTATCTTTAATGACTTAAGAAATGTATAACACTGGCTGCTATGCGAGATCAAGCTAAACTTTTAAGCTCAGTTGTGTGCAATTTTGCTTCTGTGCAACAATGTATCTGAAATGAAGAATGTAGGTTTTTAcaaaaatgtcattaattatttttaaatgtgatttttaaattaatttttttcatgacatattaaaagaaataaagtttaaaataaaagtttattccAAGTGCCAAATTTGCATTTGGAAGCTGTTCATTGGAACTCTCAGTATGAGGTTCAAACACGATGTCATGATGCTACAAGTTGAGGAGAAAAATCATTTCAGAGAAAAATAATTTGATGTACAGACGCAAATTTACACAAATTGTGTCACTATCTGAATATTTAAGGACCTGACTGTATGTACAAAGACACTTTGCATCCATGTTTTGATTAAGACATGACTGAAGTTCAAAAATAAAGACTTGAAATAAACTGAA
>XM_007228178.3
TAGTGACTGAGCAGGTTGTTATTGCAGTTGAGAGGATTTTCCGAGGCCTGCTGCACACTTTACTCGCATCCTGTGCATGTAGTGTGAGTGTCAGAAAGTAGGATctttctaaaaactgtttacaGAGtgtTGAACATGGCATCGGTGCTACAGAAGCTCCTCACCCCCCTGTTCAGTGGCCCCGCCGAGCCACCAAGGAACAAAGTGACAGTTGTAGGAGTGGGTCAAGTTGGCATGGCCTGTGCTGTCAGCATCTTGCTACGGGAGCTTGCTGATGAGCTAGCTCTGGTTGATGTGATGGAGGATAAGCTGAAAGGAGAGATGCTGGACCTGCAGCATGGAAGCCTGTTCCTCAAAACTCCTAAAATTGTCTCGGGCAAAGACTACTCAGTGACAGCAAACTCTCGCATTGTGGTGGTGACAGCAGGTGTGCGTCAACAGGAAGGTGAGAGCAGACTCAATCTGGTGCAGAGAAACGTCAACATCTTCAAACATATCATCCCTCAGATTGTGCGATACAGCCCCAACTGCATCCTCATTGTGGTGTCCAACCCAGTGGATATTTTGACGTACGTGACCTGGAAACTGAGCAGGCTCCCCAAACACCGTGTGATTGGCAGTGGCACTAACCTGGACTCGGCCCGCTTTCGCTACCTCATGGCAGAACGTCTGGGCATCCATCCCACTAGCTTCAATGGCTGGATCTTGGGAGAGCATGGTGACTCTAGTGTTCCTGTTTGGAGCGGCACGAACGTAGCAGGAGTCAGCCTGCAGAAACTGAACCCAGACATCGGCAAAGAAAATGACCGGGAGAACTGGAAGGAGACTCACAGGATGGTAGTTAATAGTGCCTATGAGGTGATCAGACTGAAAGGCTACACTAACTGGGCTATTGGACTGAGCGTAGCCGACCTGACAGAAAGCCTTATTAAAAATCTCAACAGAATCCACCCGGTCTCTACAATGGTGAAGGGCATGTATGGGATCAGTGATGAGGTATACCTCAGCCTGCCATGTGTGCTGAACAGCGGTGGTGTGAGCAGCGTGATCAACATGACTTTGAATCAGGATGAAGTGTCTCAGCTGAAGGACAGCGCTGACACGCTGTGGAACATTCAGAAGGACCTGAAAGATCTGTAACACACTTCAAACAGAGCGCACTTATTCACATCACCACATCAGACCAGCACCTGTAGTCGTAAAGTAGCTTTAGGAAGGAGTACTGATCCAGTCTTCTCCTCCTTCATTCATAATAATGCTAGTAAGGTGAAGGCAATACTGCTATTAATGCAGCACTTTTATCTTTAATGACTTAAGAAATGTATAACACTGGCTGCTATGCGAGATCAAGCTAAACTTTTAAGCTCAGTTGTGTGCAATTTTGCTTCTGTGCAACAATGTATCTGAAATGAAGAATGTAGGTTTTTAcaaaaatgtcattaattatttttaaatgtgatttttaaattaatttttttcatgacatattaaaagaaataaagtttaaaataaaagtttattccAAGTGCCAAATTTGCATTTGGAAGCTGTTCATTGGAACTCTCAGTATGAGGTTCAAACACGATGTCATGATGCTACAAGTTGAGGAGAAAAATCATTTCAGAGAAAAATAATTTGATGTACAGACGCAAATTTACACAAATTGTGTCACTATCTGAATATTTAAGGACCTGACTGTATGTACAAAGACACTTTGCATCCATGTTTTGATTAAGACATGACTGAAGTTCAAAAATAAAGACTTGAAATAAACTGAA

Function

symbol description
ldhbb Predicted to enable L-lactate dehydrogenase activity. Predicted to act upstream of or within carbohydrate metabolic process and carboxylic acid metabolic process. Predicted to be located in cytoplasm. Is expressed in liver and retinal photoreceptor layer. Orthologous to human LDHB (lactate dehydrogenase B).

NR:

description
L-lactate dehydrogenase B-B chain isoform X1

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228177.3 True 1872 mRNA 0.45 8 14607589 14614390
XM_007228178.3 False 1778 mRNA 0.44 8 14608098 14614390

Neighbor

gene id symbol gene type direction distance location
slc25a3 slc25a3,slc25a3b,LOC107732290 coding upstream 1632 14597965 ~ 14605957 (+)
LOC103026417 LOC108428785 coding upstream 11653 14590603 ~ 14595936 (+)
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding upstream 45052 14556020 ~ 14562537 (+)
rccd1 NA coding upstream 56669 14546797 ~ 14550920 (+)
ldlrad3 ldlrad3,LOC106573355 coding upstream 218268 14238039 ~ 14389321 (+)
slc35b4 slc35b4,s35b4,LOC106561668 coding downstream 6081 14620471 ~ 14626071 (+)
LOC103027493 LOC108428780 coding downstream 12822 14627212 ~ 14637073 (+)
dus2 dus2,LOC105922392,LOC108229071 coding downstream 130878 14745268 ~ 14754530 (+)
LOC103030248 NA coding downstream 142933 14757323 ~ 14775204 (+)
amfr amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700 coding downstream 162321 14776711 ~ 14786908 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 62076 14542198 ~ 14545513 (+)
G73468 NA non-coding upstream 282966 14323965 ~ 14324623 (+)
G73464 NA non-coding upstream 337865 14266776 ~ 14269724 (+)
G73443 NA non-coding upstream 441933 14164794 ~ 14165656 (+)
G73414 NA non-coding upstream 443249 14163344 ~ 14164340 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding downstream 28 14614418 ~ 14619324 (+)
G73527 NA non-coding downstream 23557 14637947 ~ 14638553 (+)
G73532 NA non-coding downstream 32053 14646443 ~ 14647562 (+)
G73566 NA non-coding downstream 61483 14675873 ~ 14676794 (+)
G73598 NA non-coding downstream 230055 14844445 ~ 14844664 (+)
LOC103043719 NA other upstream 1709658 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3980625 10272919 ~ 10626964 (+)
G72621 NA other upstream 4525449 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4637547 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 5458170 9142899 ~ 9149419 (+)
G73533 NA other downstream 34439 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 277144 14891534 ~ 14921003 (+)
svip svip other downstream 957912 15572302 ~ 15577533 (+)
G74169 NA other downstream 1672286 16286676 ~ 16288329 (+)
G74649 NA other downstream 3840461 18454851 ~ 18455197 (+)

Expression


Co-expression Network