prkar2b (prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465)


Basic Information

Item Value
gene id prkar2b
gene name prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14718554 ~ 14733253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228182.3
aaattaaacaattaaataaataaacggcGCGTTTCCTGTAGCCAGCAGCAAAAAGATGCGAGCTGTTGAATTTTCTGCCATTTTCGTGCCTCAAAATTAGGGACGCTGTCAGTACGGATGGAAGTCTCTGCCATGGAGTTGTGAGAGATCCTCTGctcgtatgtgtgtgtttgctggttTTTTTGGCTGTGTTTCCAGTTCATCCAGCGCAGGTCACCGTTCATTTCAGCTGACGTTGCCAAGACGGTTGTGATCCCCGGTACTACTGCAGTTTTGCACCGCTTTCTCCGGAGCCCTGGTATCAGGAATGAGTATAGAAATCCCCGAGGGGTTGACGGAGCTTTTGCAGAGCTTTACCGTGGAGGTGCTGAGGAATCAACCCCGGGATCTGTTGGAGTTCGCCCTGCAGTATTTCACCCAGCTGAAGGAGAACGAGAGCAGGGGGGGCGCGTTTGGCAATGAGCAAAACTCGGCCGTGCGAGCAGGGAAAGCCGTCAACTTCATCGAGGAGGCCATGCAGATCGACTCGGAGAACGAAGAGGATGAGGATGACGATGAGGAATTCGTAGCCCCAGTGATAAACAGGTTCATAAGACGAGCCTCTGtgtgtgcTGAGGCGTTCAACcctgatgaggatgatgaggacAAAGAGCCCAGGGTGACTCACCCGAAAACAGATGAACAGAGGCACAGACTACAAGAGGCCTGCAAAGACATTCTTCTTTTCAAGAATCTTGACCAGgaGCAAATGTCCCAAGTATTGGATGCCATGTTTGATAAGGCAGTAACTTCTGGTGAACACATCATTGATCAAGATGACGATGGAGACAACTTTTATGTCATTGAGCGAGGGACTTTTGACATCCTTGTGAAGTCAGATGGCACCAGCAGAACAGTTGGCTCATATGATAACCGTGGGAGTTTTGGGGAACTTGCCCTGATGTATAACACCCCACGTGCAGCCACCATTGTTGCTACCTCACCTGGAGCCCTGTGGTGCCTAGACCGATTGACATTTCGAAGGATCATtgtaaaaaacaatgcaaaaaagaggaaaatgtATGAGGCTTTCATCGAGACCCTTCCACTGCTAACATCTCTGGAGGTTTCAGAAAGAATGAAAGTGGTGGATGTCTTGTCATCGAAAGTGTACAGTAAAGGAGAGCAAATAATTGCACAGGGTGACCTAGCAGACtctttctacattgtagaatcAGGTGAGGTTAGAATCACCATGAAGAGAAACCGGTTGAAAACAGATTCTGAGGAAGAAGAGGTGGACATCGCCACGTGCACTAGAGGGCAGTACTTTGGAGAGTTAGCTCTTGTCACCAACAAACCAAGGGCAGCTTCTGCATATGCTGTGGAGAATGTCAAGTGCTTAGTAATGGATGTCCAGGCTTTCGAGAGGTTATTGGGACCCTGCATGGATATCATGAAACGCAACATCGCAAACTATGAAGAGCAGTTGGTCACCCTCTTTGGGAGTCAAACAGAAATAGAGGAGCCAAgtgcatgaaattaaacaaaaaataaatttaaaaactgaaatgcaacATAAAGAAAAGTTGAAATAATGGTGAGTACAGGCCTTTCTACAGGCCTTTGTTCAGATGCCATATGATCATAACTTTTGAAGTTTTGAGTTCTTGTTTTGCATTCACAGAAGTGAAGCTCTGGTGTGTCAGTGATAGTGATTTTTACAAATGACAAGCCAAACATGTAGGAGATCCTTAACAGGTTACACATggtttataaaaaaagtttttttcccaTGAGTACAGTGTTTTATCACGCTgggattatactgtatttatccaGTTACTGGGTAAAATGTCAGTttctcttttgtgttttgtgttttgttcacTCGTATTGGGATGgaattatttttacagtgaattttactttctctctcagtaTTTAACAGCGAACATTTGCAGTCTGCTATAAtcatttttcatatattttgaaattatttaaattttgtaattttttttgtgcacttGTCAATGATTTAAACTCTGTAGTGTACCTACAGAGAATGAGCAAATCACAAAGAAATTTGAAAGGGCCCTGCATTTGAGCACAAGACTGGGATAGAAACCAAAACATAACATGTTAATTTGTGTTAATAAAAGCTAGCAGTGTGATATTGATGGAAACATGCGATGGCTTTATAATATGAGGTAAAAGAGAACAAAGGAAACaaaagtgtgtgtatactgATATTGCACTTTGAAGCTAGCTGTGAAGGGAAAAAGTAAttgcacacatttaaacattatattgtacacagtattttaaaatttagtttttagtcACTGTCATAAATATGTTGTCATTTTATATTCATACTTTAAAAAGGtagcttatttattttacacctTGATACTTAAATTTTGACATTTTCAGTCTCAGTGTATCACTGTAGTGTTAGACATACAGTATTTGACATTTGTGAAAGAGTCATCTTTTAGCCATTGTTTTCTACAAACCAGGGTGTGGTTGCTTTTGGTAAAACTAATAAGAATAATCACGATCAAATGCACATATCGCTTTATCTACACGATTAGGCTATTTTGCCCCTACAAATTCTATATTTTGCCTCTGATCTGCAATATGCTTCACCACTTTCAGTCATGTTTTGctattatgttttactgtatctaTCCCTTTCTCTGTATTTATATCATAGTGTCTTTACTCCACCGGCAAGTTAACCATTATAGAACTTTTTCTTCCGATGACATTTGataagattatttatttattactgtctACCTCCACACACAAACATCACAACATTACTCCACGCGGGAGCCTGCAGCCTCCCTTTCCTAGTAGCTGGCCTCTACTGAGCGCTTTTAGTGTAGGCTGTTTGTGTAGGTCcatcattttttataaaattcagCTTGTACACCTGTTAGAGACTTTCAATTGCGAATAATGTTGacctgtgttttatatatttattaacatcAGTTACTGTGTCTGATTTCACCACCTCTGCAAGTAGCTCTTTGTGTTGCCAGTACTCTCTACTACTATTCCATGAAATTCAGATTTAAGGTCTACAGACTCTTGACTCTCGCCAGAGTATCCACAGTATTATTGTCAGTGATATTTGACTTTccatcaaaataaaatacacttttgtaTTAAA

Function

symbol description
prkar2b Enables cAMP-dependent protein kinase inhibitor activity; protein kinase A catalytic subunit binding activity; and ubiquitin protein ligase binding activity. Involved in negative regulation of cAMP-dependent protein kinase activity. Located in centrosome; cytoplasm; and plasma membrane. Biomarker of granulosa cell tumor.

NR:

description
cAMP-dependent protein kinase type II-beta regulatory subunit

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228182.3 True 3166 mRNA 0.40 11 14718554 14733253

Neighbor

gene id symbol gene type direction distance location
LOC111193055 NA coding downstream 28447 14687689 ~ 14690107 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding downstream 69303 14640001 ~ 14649251 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding downstream 99166 14614391 ~ 14619388 (-)
LOC103041151 NA coding downstream 140036 14574795 ~ 14578518 (-)
LOC103040849 LOC108428736,LOC104940688,LOC108274568 coding downstream 144333 14566910 ~ 14574221 (-)
mphosph6 mphosph6 coding upstream 89965 14823218 ~ 14826889 (-)
snx20 snx20 coding upstream 94151 14827404 ~ 14831477 (-)
LOC103033621 NA coding upstream 116329 14849582 ~ 14857596 (-)
rbl2 rbl2 coding upstream 135679 14868932 ~ 14889755 (-)
irx3 LOC103035229,LOC108428748 coding upstream 231245 14964498 ~ 14967301 (-)
G73606 NA non-coding downstream 41696 14675881 ~ 14676858 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding downstream 112594 14597951 ~ 14605960 (-)
G73509 NA non-coding downstream 250413 14467622 ~ 14468141 (-)
G73491 NA non-coding downstream 441448 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 646516 14070499 ~ 14072038 (-)
G73617 dus2,LOC107555686 non-coding upstream 11917 14745170 ~ 14748658 (-)
G73622 NA non-coding upstream 23646 14756899 ~ 14757248 (-)
G73605 NA non-coding upstream 64102 14797355 ~ 14800633 (-)
G73639 NA non-coding upstream 70978 14804231 ~ 14805502 (-)
G73642 NA non-coding upstream 85249 14818502 ~ 14818812 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 173018 14542196 ~ 14545536 (-)
G73172 NA other downstream 2097198 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2153576 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2667065 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 3173308 11520887 ~ 11545246 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 390561 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 648076 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 1025050 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1733836 16467089 ~ 16470323 (-)
nrg4 NA other upstream 3143773 17877026 ~ 17885395 (-)

Expression


Co-expression Network