dus2 (dus2,LOC105922392,LOC108229071)


Basic Information

Item Value
gene id dus2
gene name dus2,LOC105922392,LOC108229071
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14745268 ~ 14754530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228185.3
ATTCGGAGTTCGAGTGCACTTCGTGGAGTATGTAACCTAGCTAGTGTGCAGTGTGCGAAAGGAACAACCCCAAACGAGCTCTGTCGCTTATTGGTGACGACAACTAGGAACCTGGAGTTAAACACGCGTGTTCACTGCAGCCGTACAGAGAAGTGTTTTGATGCCGGGGTAAACAAGGCAACACCATGGCCAACGCTTTGGGAAAGCTGAGTTTCAACAATAAGATCATTCTAGCCCCAATGGTGCGGGTGGGCACTCTACCTATGAGGCTCTTGGCACTGGACTATGGTGCAGATATTGTCTACTGTGAGGAACTAATTGACATCAAAATGGCTCAGTGTGAAAGGGTAGTGAATGATGTTTTGGACACGGTGGATTTCATTGCTCCAGATGAGAGGGTGATGTTTCGAACCTGCAGTAAAGAAAAGGACAGGGTCGTCTTTCAGATGGGGACTGCAGATCCAGATAGAGCCCTGGCAGTGGCCCAACTTGTTGAGAATGATGTGGCAGCTATTGATGTCAATATGGGCTGTCCAAAAGAGTACTCCACCAAGGGCGGAATGGGATCTGCTCTCCTCTCTGATCCTGAAAAAATTGAGACTATTCTTACCACTCTTGTGAGAGGAGTTTCAAAGCCTGTAACCTGTAAAATCCGAATTCTTCCCACTCTGGAAGAGACTGTGAGTTTGGTGAAgagaattgaaaaaacagggGTGGCAGCAATAGCTGTCCATGGCAGGATGAAagatgagagacagagacaccCTGTTCACTGTGACTACATTCAAGCGGTAGCTGAAAATGTTTCAATACCTGTCATAGCAAACGGTGGCTCCCAGGATCATGTAAAAACTTATCAGGATATTGAGAAATTCCGAGAAGCATCTGGAGCATCCTCTGTCATGTTGGCTCGAGCTGCAATGTGGAACCCTTCAATCTTCCGCAGCCAGGGGGCGCTGCCAGTGGACGAAGCTATAGAGGAATACATCAAATatGCTGTTCGGTATGATAACAACACATTCAACACCAAATACTGTGTGTGCCAGATGTTGAAGGACAGAGTGGAATCCCCAATGGGCAAACAGCTCCATGCTGCACAGACTAACGCAGAAATTTGTGAGGTGTTTGGAATGACTGATTTCTACAAAAAGGCCCAGGCTGATCTGGAGAGCCGGAAAAAGGACcttcagcagagcagcagcagtgacCTTTTTGATCAGCCTGTGCTGGATGGTGATGTCATCACCATGGCTGTGAAGTTTGAAAGGAGAGAATATCCCCCACAGATCACACCAAAGATGTATTTGCTGGAATGGAGTCGAAAAGAGAAGATGGAGCAGCCAGTGTATGAAACGGAGCAACGTGTCCAAGACAGAGCTTTTCAGTCCACAGTGTTGGTGGCGAATAAAAAATATCGCTCCACCTTGTGGGAGAAGTCAAAGAAGTTTGCTGAACAAGCTGCTGCTATCGTATGTCTGCGTACGCTTGGGTTGCCCGAGGGCCGTATCGGAGAAGAGAACTCAGGACTAGtgaacaaaagaaagagagagcagagaagCCGTGACGTTTCACAGGACAGTGGTATTACAGACTCAACAAACAGGAAGCGACGGAGCACTGAGCCATCACAGAAAGAGGAACAGGAGTCAAATGACAAGATAACTGTGGTGAATGGCTCCTGTGGTCAGACTGTACCGTGACCATGACGAGACAATCCTTGCTCACTTTATGGACTTATTTTGAGGATCGTGCCTGCTGCTAAGTGGCAGCATTCCATTTACAAGTAATGCAGTATATAGTTTCTGTACACACAGAACCCTAcggttctttttcttttaataggGAAACTTATTTGTGTAACTTATGCATGAAAGAGAGATTTTAAagcatatgtttaaaaaaaggacaaaaatgccttatttttaatcagattCTGGCATCTCAGACATTATTCTGAGCCAGCCCATGTTCATGTGGAGCTTGTGTGGGGTGTAACTTGGGCCCCAGGTGGGCATGGGCTTTGAGTGGGTTTGTACATGTGTTGTTGGGTCCCCCATCGTTATAGCCCATCATAACCTCATATGGATCCCATCTAGGCCCCATGAGGAGTGTACTCCATAAATGGCGGGCATCCCTGGGCTAACACGGAACCTGTGGACAAATGTTTTGGTTGCCAGCTGGGCTACCTATAAAGGTCATATATGGGCACTGTATCTGGAAGATATCTGGGTGGGTTCTCATTACtggaaagagtctaaaaagtAAAGGACAGTAGTACTCAGCACCAGATTATATAAACCATTCTTTATAACTAACACAGCTGCTTTTTCATTGACCAAAAGAGGGCAATCAACTAACTTGATTACTCAGCCACTGTGTCTGTATTGTAAAAGCCAAAAATAATTGCCAAAATGTGACTTAGAGAATACTTTTCATCTAATTGTAACTGAGctaatttactattttattttgagGGTGATGgaattgctttttattttaattaaatctaTTTTCAGGCTCACTATTTTGAGAGCCCTTA

Function

symbol description
dus2 Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be active in cytoplasm. Orthologous to human DUS2 (dihydrouridine synthase 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05543 DUS2; tRNA-dihydrouridine synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228185.3 True 2539 mRNA 0.45 16 14745268 14754530

Neighbor

gene id symbol gene type direction distance location
LOC103027493 LOC108428780 coding upstream 108195 14627212 ~ 14637073 (+)
slc35b4 slc35b4,s35b4,LOC106561668 coding upstream 119197 14620471 ~ 14626071 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding upstream 130878 14607589 ~ 14614390 (+)
slc25a3 slc25a3,slc25a3b,LOC107732290 coding upstream 139311 14597965 ~ 14605957 (+)
LOC103026417 LOC108428785 coding upstream 149332 14590603 ~ 14595936 (+)
LOC103030248 NA coding downstream 2793 14757323 ~ 14775204 (+)
amfr amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700 coding downstream 22181 14776711 ~ 14786908 (+)
LOC103031607 LOC108274970,LOC108428766 coding downstream 34237 14788767 ~ 14797233 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding downstream 47188 14801718 ~ 14812498 (+)
hsd17b2 NA coding downstream 60274 14814804 ~ 14823334 (+)
G73566 NA non-coding upstream 68474 14675873 ~ 14676794 (+)
G73532 NA non-coding upstream 97706 14646443 ~ 14647562 (+)
G73527 NA non-coding upstream 106715 14637947 ~ 14638553 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding upstream 125944 14614418 ~ 14619324 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 199755 14542198 ~ 14545513 (+)
G73598 NA non-coding downstream 89915 14844445 ~ 14844664 (+)
G73710 NA non-coding downstream 369342 15123872 ~ 15126987 (+)
LOC111193097 NA non-coding downstream 431719 15186249 ~ 15187955 (+)
G73715 NA non-coding downstream 434365 15188895 ~ 15189386 (+)
G73799 NA non-coding downstream 611113 15365643 ~ 15368383 (+)
G73533 NA other upstream 95717 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 1847337 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4118304 10272919 ~ 10626964 (+)
G72621 NA other upstream 4663128 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4775226 9968506 ~ 9970042 (+)
rpgrip1l rpgrip1l other downstream 137004 14891534 ~ 14921003 (+)
svip svip other downstream 817772 15572302 ~ 15577533 (+)
G74169 NA other downstream 1532146 16286676 ~ 16288329 (+)
G74649 NA other downstream 3700321 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3716174 18470704 ~ 18479345 (+)

Expression


Co-expression Network