amfr (amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700)


Basic Information

Item Value
gene id amfr
gene name amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14776711 ~ 14786908 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228191.3
CTCTTGTGTAAACAGCGGAAGAGGCTCGGGTTGCGTCAGCAGCGCCGgaaaagctgagagagagagaaactccGAGAAACAACTGGAAGACTggagcagacacacacagagacgaACACAGCGGACCCCGGGAGTCCTGTAGTTGTAACACAGCCTGCACTACAAGTTCTGTTCGGACATTTGTGGGCGAACTCGGCCTGAAATAGTCCCTGACGGCATTTCCCCCTGACTGCCTGAGTTCGTATTAATCCGCTTAAGAATATTACTGACATTACTGAGAGGCGAGGCTTCAGCTGGAGCGGTGAGCTATAGCCCTGCTGgctttagcctgttagcttctCTAGCTAACTAACCTGTCTTGCTGGAGACCACAGGCACTGCCAGTGAAACTGTAGCTATTGTTAAAACATTTGCCCGCTCTGAGATCTGTAGTAATGGAATTTAAAACcgagaaaagcagaaaaatgcATGTAACCTAGCGTTAAATAGTCTAGTCTAGCTAACGTTAGTCGTTTTCACTGGTGTCTTGTGTTGTTTACACGTAATGCTAAACcaactagcttagcttagctaacagaCAACACGTAAGCTAACCTAGATTTTGATAGCTAGCTGTCAggctaagctagctaggttagctttcCCAATTCTAAGTTCTAAGGACTTGTGACAGCACAGAAACGAATTTGCAACTTGCTAGCTaattatttagctagctaaggtTACCTAGTGTCTAGGTAACCTATCTAACGTTAACTTACCTTACCTGTCTAacttatatatctatttaaccTGGTAGCTATCCAGCTTCACAGGGTTCGTGCCGTGACCTGAATCCTAAATAAAGCTTGTTAAATAGCCAACTAGGCCTGCTAAATAACTTggttaactaattaactatttAGCTAAACTATATCTAACGTTATAGAAGACGGGAGCTCACAGTACTGCTCCCACCCCATTTCATCATCAGTGTAAACATTTCAGTGTAAACACAGAAAGCCTCTCTGTAGATCCCTCTCTTTATCTGAAGACGTGCACACTGGACAGTCTCGCCATGCCCCTGTTGTTTCTGGAGAGGTTCCCCTGGCCCAGCCTGCAGACCTACACTGCGCTTAGCACAGTCCTGCTCGCTGGTTCGATCCTCAGTGCCTACACCGCTGTAACCCAGATCCCAGAGCCCGCAGCTCCGGTAGCAGAGGACGCCCGGACCGAGCCCATCGAGGACAGTAAAGCTGATCAAGGAGAGGCCATTGAACATGTTGCCTCTAACGTGTTGCTGTATCTCATCGCCGACAACTTATTCGTCTGGGTGATGGTGAATACAGCATGCTGTGTCCTCATGCTAATCGCCAAGGTGATCCAGTGCATTGTTTTTGGTCCTCTGCGGGTCAGTGAGAAACAGCACTTGAAGGACAAGTTCTGGAACTTTATCTTCTATAAATTTATCTTCATCTTTGGAGTGCTGAATGTGCAAACAGTGGACGAGGTAGTGCTGTGGTGTTTGTGGTTTGCTGTACTTATCTTCCTTCATCTCATGGTTCAGCTCTGTAAAGATCGGTTTGAATATCTGTCATTCTCCCCAACCACCCCCATGAGCAGTCATGTGCGAGTACTGGCCTTGCTAGTGTCCATGCTGTTGTGCTGTGGAGGCCTAGCTGCGCTCTGTGGCCTGGTCGGACATCTTCATGGCATGCATACTGTTGCATTTATGACAGCTGAGTGTTTACTTGTTACGGTGCGCACTGGACATGTTATTATAAGgTACTCTATTCACCTGTGGGACCTGAATCATGAGGGGACTTGGGAGAGCAAAGGCTCTTATGTCTACTACACTGATTTCATTATGGAGCTTGCTCTTCTCTGTCTTGACCTGATGCATCATATTCACATGTTGCTCTTTGGGAATATCTGGCTGTCTATGGCCAGTCTGGTGATCTTCATGCAGCTGCGCTACCTCTTCCATGAGGTGCAGAGGAGAATCCGCCGCCACAAAAACTACTTGCGTGTTATTGACAACATGGAGTCCAGGTTTGCAGTGGCAACCCCAGATGAGCTGGTTGCCAATAACGATGACTGTGCAATCTGCTGGGATTCAATGACCTCAGCACGGAAACTGCCCTGTGGACACCTCTTCCACAATTCATGTCTGCGCTCATGGCTGGAGCAGGACACCTCCTGTCCAACGTGTCGTATGTCACTGAATATCAATGAgggtggaagagagagagaagagggccAGAGAGCGCAAATAGATGACAACATGGCTGCAGGACCTGGGGCTGATGCCAGGCCTCACCTCAACCAGCATAaccatttctttcattttgatGGTTCTCGAATTGCTAGCTGGCTTCCAAGCTTCTCTGTGGAGGTCATGCATACAACCAACATCCTGGGCATTGCACAGGCCAACAACTCTCAGCTCAACACCATGGCACATCAGATCCAGGAGATGTTTCCCCAGGTTCCTTATCACTTGGTCCTGCAAGATCTGCAGCTTACCCGCTCTGTGGAAGTCACCACAGATAACATATTGGAGGGCAGAATCCAGGTGCCCTTCCCTGCTCAGCCTGTGGAGCGGACACCCATACAGTTAAACTCATCCCCAGATGAGTCAGGAGGTGCCAGTGGTGGTCCAGAGGTTCCAGCTGCAGAGACCGAGGATTTTGAAGTGCGCGGAAGTCGCTTTTCCAAGTCTGCTGATGAGAGACAGAGGATGCTACTGCAAAGAAAGGAGGAACTGCTGCAGAGAGCACGCAGacgcTATCTGAACAAAAGTTCTGGAGAAGTAGTCACCTTTAATTCAGCTGCTGACACTGCCTTTGAGGGTGACGATACCTTACCCTCCCTGGAGGATGAAGACTCCACCTCGGACTTTGTGACTGTGCGCCGCAGGATGCTAGCAGCTGCAGCTGAGCGGCGCATGCAGAGGCAGCCAGACACGCCACTCTGAAGTGGGACAGCACCTTTGTGCACATCCAGCTCTGCCTCGCTCAACCCTGTCAAGGCTGACATGGAAAAGACCTCCTGGTCACCCTCATCTCAAGTCAAGCAAAATTGTGCATGACACTTGCTTGTGCCGTGATACAGCCGAGCCCAGCAAGCTAGGTAAACTTCAGCAGCTCGGTTGTTTCTCAGATAAGTTTCAGTGTCTACTCAGTCTTAACACTTATCTATATTGCACAATGTTAATACGTGACACACCAGCTTCGCTGTGCTCTGCAAAAAAGTCTATGCATGTGTCATTTTAACCTTTTCCAACGTTCAGTCTATTATCTGCCCAATCATGGGCTTATTGCTGTACATTcctttatatgtaaatataaaggAACTTGGTGAACCTTGGGACAGAATTGTAAACCCAAATCCTGGCGGTTCTTCAGAGTCCGCTTGAAGAGTCTTGTCTAAAGTGGGCTATCTGAATAGCAGGCAGCAAACGCTTTTGGTGTAGGTCCTCAGTAATGCAAGCATtacattgtatttgttttaatttaggaATGTttcatataaattatttttagaatcaaaaatgtattaaattcacCTTTGATTATTTTAATCTAAAGCAATATCTCATGCTATCATTTTAAAGAGCTAGTTTTATTAGACATGGGCTGTATTCAATGGTCAGCTTCCTCCATGTCCAAGTACATGCTGAAATGATGACTTGTTATTCACCTCCAGAATTGTTGTGATTTTTCATGATTCAGATCCTTAAAGCTTGTGGACTTCTGGGCCAGAATTAGAAACGTAATTTGCTTTATGGATTAGGCTTTACTAATACTACCAGCACATTATAGAGCTGTAGGCATTGGTGTGCTGTTTTAAAGACTACTGAAATTATTTGAATGCCTTTAGTCTGATCGCAGTGCAAATTTCTGGTGTTACGAAGATGCAGACCGGCAGTTACAGACAGTTAAGGCTTATCGTCTTGACTAGCcttgctctttttcttcttgGAAACGTGtgcaaaaaaacttttactttactttctctAACTGTTTGTCAATGTTACACTATTCAGATGTATTTTGGCATTTATAATTGCATTTGTTTGTGTTCCCTTCAATTATTTGTTGTACTGTAGACATAATTGGGTGGAATGTTTCTGTGCTCCACGTTAGTGCTGTTTGTTTTGTGGTACATTTAAAGATAAAGTGAGGCAAGATGCACACAGTTGATTGGAATGTTTGGAGGTGAGTTATGAAAAACATAATGCTTTTGAAGAAAATCCCATTTAATTTGGATTTTTCTTCAACAATTGCTACAGATGGCAGTTTTCTCACTTAACTTGATGCCTAAAAATGCTTATGTTTTTTGCTTCTTAATGAGCATTAATTCAGTTATTCTAACTTAATAATAACCTTAAGCAATACTGAATGTTAAATCAAATCAGATTGAAGGTTTATTCTAAGGTCATTTTGCATGTTTTCAGTCGCAGTGAGTTGAGTTATGCAGGTTAGTGTTATAACTTTAAGAGCAGCTCAAAGGTAGAAAAAGCCCAATTTTCATAATActagtatattaaattattattgttttaaactgAGTGAAAATATTTACTGGGTGATGCAAGATGCAGAGTCACTAACCAGCTACACTTAACAAGAAATGCTGACTACAgcattgttttcttttgttttgtttcagaaTGAGTAGAGAATTTTAAACTGGTCTTGTCTGTGTAGTGATGTGCAGTCACTACTGTTTTACACTGTGAACCTATTTtatcaaatgtgtttttttgtttttctcatttCACAATTACCAGCCactttctgttctttctttcaatttgttcttttctttctttcaatttGTTCATCTTGCTGCCTCTCTTCTATGCATGGAATATCACTGTTTGTGATGTATCTGTCTTATCTTTCTTAAAGTATTCCCAAAGACTGTGTTGGTACCTGAGGTAGGAGGTTGTGATAAGTGTTTCTAACGAGTTCATGCAGCTCTTTCATTCCAGGTCACATCTTCTGGAGCTATATGCTGTGGTTGCACAGCTGCACCTTTTGATCAGTATTTCTGCAACTGATTCAGATGATTCACTTTGTATCActatttaatgaaaatgtgatTCACGTCTAGTTATCTGTATAAAATCTAAAAgaactatctttttttttttttagattttttttttaatttgtgccTAAATTCAACAGTGGATCAAGGATTGTTtgaaatgtgtaaataattttgtaatgaagactgtattataaatgtgaaatgaccctgtacaaaataaaattctGAGCTACTATAGAGGCTTTTAATCAA

Function

symbol description
amfr Enables several functions, including BAT3 complex binding activity; chaperone binding activity; and ubiquitin-specific protease binding activity. Involved in several processes, including endoplasmic reticulum unfolded protein response; protein ubiquitination; and ubiquitin-dependent ERAD pathway. Located in Golgi apparatus; endoplasmic reticulum membrane; and perinuclear region of cytoplasm. Is integral component of endoplasmic reticulum membrane. Part of Derlin-1 retrotranslocation complex.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase AMFR

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10636 AMFR, GP78; E3 ubiquitin-protein ligase AMFR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228191.3 True 5292 mRNA 0.43 13 14776711 14786908

Neighbor

gene id symbol gene type direction distance location
LOC103030248 NA coding upstream 1507 14757323 ~ 14775204 (+)
dus2 dus2,LOC105922392,LOC108229071 coding upstream 22181 14745268 ~ 14754530 (+)
LOC103027493 LOC108428780 coding upstream 139638 14627212 ~ 14637073 (+)
slc35b4 slc35b4,s35b4,LOC106561668 coding upstream 150640 14620471 ~ 14626071 (+)
LOC103028647 ldhbb,LOC103028647,LOC108428782,LOC108275055,LOC105895664,LOC103366875,LOC106573069,LOC107744904,LOC107659842,LOC107589975,LOC107586539 coding upstream 162321 14607589 ~ 14614390 (+)
LOC103031607 LOC108274970,LOC108428766 coding downstream 1859 14788767 ~ 14797233 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding downstream 14810 14801718 ~ 14812498 (+)
hsd17b2 NA coding downstream 27896 14814804 ~ 14823334 (+)
irx5 LOC108428750 coding downstream 288551 15075459 ~ 15081023 (+)
lrrk2 lrrk2 coding downstream 521621 15308529 ~ 15351344 (+)
G73566 NA non-coding upstream 99917 14675873 ~ 14676794 (+)
G73532 NA non-coding upstream 129149 14646443 ~ 14647562 (+)
G73527 NA non-coding upstream 138158 14637947 ~ 14638553 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding upstream 157387 14614418 ~ 14619324 (+)
G73514 dynlrb2,LOC103025073,LOC106573385 non-coding upstream 231198 14542198 ~ 14545513 (+)
G73598 NA non-coding downstream 57537 14844445 ~ 14844664 (+)
G73710 NA non-coding downstream 336964 15123872 ~ 15126987 (+)
LOC111193097 NA non-coding downstream 399341 15186249 ~ 15187955 (+)
G73715 NA non-coding downstream 401987 15188895 ~ 15189386 (+)
G73799 NA non-coding downstream 578735 15365643 ~ 15368383 (+)
G73533 NA other upstream 127160 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 1878780 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4149747 10272919 ~ 10626964 (+)
G72621 NA other upstream 4694571 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 4806669 9968506 ~ 9970042 (+)
rpgrip1l rpgrip1l other downstream 104626 14891534 ~ 14921003 (+)
svip svip other downstream 785394 15572302 ~ 15577533 (+)
G74169 NA other downstream 1499768 16286676 ~ 16288329 (+)
G74649 NA other downstream 3667943 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3683796 18470704 ~ 18479345 (+)

Expression


Co-expression Network