snx20 (snx20)


Basic Information

Item Value
gene id snx20
gene name snx20
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14827404 ~ 14831477 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228194.3
tgtctttaaaACGCTTAATAAAAGACTGTATAACGATAATGGATTGAGCAATATTCATCTGTCAACAGCCCAATCTGCTTCTACTACTAATGTGAAGAACCGCACACACGTGTCTGCATGTGTTTACAGTGAAGGCCTTTCTAGACAGATGCTTATCTGAACTTCGCTTGTGAGGAAAATTACTGTAAACATCCCCATCTAGTGGACAGCAGTGATAATCTGagtttaaaacagagataataaataaatcaatgtaGTACCACAAATCTCTCATTTTACTTATGTTTTTGTCCTAATTTTGACACTGTGGAGTTTTTTTGTATGCAAACCAGTGTGTGATATATGGAGTGATTTGTGAAAGCTGAGAAGAGCACAGACACTCCCTCTTTTAGGTTTCAGTTCCTCCTTTCAGTTAGGTTTCATGCCTAATTTCAGCATTTGCCAAGGAGACATTTAAGCTTTACACAAGGACTTGTCTAGTagacattatatacatatagtatAACAATTGTAATTTTGTGAAATGTGGGTTTATATGAGTCATTTTATGTAGATGTAGTAACTGCAGCAGGGGACTCTTGGGGCCTACAGAATGAGGGAAGCAGTCACCATGGGCATGAGCCAACATTTCTACACACAGAGTGCAGCTCCGGTCACTCAAGTCACTGTCTGGTGAATTGAGCATGGATTCTTCAGAGGCCCGTCTACTAGACCTGAGGACTGGTGATGAAAGAGGAACCAGCACCACTCATCCTAAAGAGTCTGAGCATCATCAAGAAACATCAGTTGATACTGGTCTGGAGGCATCTCCAGGCTTCAGTGCCTCCTGTCTGACCACAGCGGAGCTTCAGCAGCACTGGAGGGCCGTGAAACAGGAGATCAGATGTATTAAACTGCTGTTTGAGATCCCCTCTACACGCACCATCGAGCAAGCCACCTCTAGATATGTGGTGTACAAAATAGTGGTGATCAGATCAGGCAGTTATGACGGTGAGCGGGTGGCCATTGAACGTCGCTACTCAGActtcctccatctccaccatcaGCTGCTTCAGGACTTCAGCGAGGAACTAGAAGACATCTCCCTTCCCAGGAAGAAACTGGTGGGAAACTTCTCAGAGGAGAACATTGCTGAGAGACGTGTGGCCCTGTGTGATTACCTGACCCAGCTCTACTCCCTGCGCTATATCCGCCGCTCACCTGCTTTCATAGCATTCTTCACCCACTCTGAGCTGAAGGCTGCCCATGATCTGCTCCGGGGAGGTCGCTTCTCCCAAGCCCTTGAGATCCTACAGAGCGCTTTAGTGCTCCAAGAAAAGCTGTCcacccatgatgccactctgcTGGTGCCTACCCTGTGTGCACTGGTGGTATGCCAGAGGGACCTGCAGGATTTTCATGCTGCTTTTAAGACTGGCCACAGGGCACTGCCAGCAGTGAGACGCTACGGCCTAAGCAAGTATCGAGCCCCTCTGCTGGAAGCCATGGTGGATCTTGGGTATAAGATGGAGCAACCCGTGGCCCAGCTACAAGCAGAACTTATTAAAGTTCAAAACTCACCACGTGAACAAATATCACTAGTGTCACTAAAAGAGCTTGTGGTGCAAGAGTTTACATGATTCCAAAGAtttataatggaaaaaaatgctaTTGATACTGACTTTcactttgtatatttttgtgtttttcttgagATACAAAATCTACAGAATATGAAGTTTGGGGGAGCCAGAAAAGATTAAAaggtttttatcattattaattagttattaattattcaaagCAACAAGGGATCATTGCTCAAATCAACTGCTCATACCACACAAATAGATTTTTTGATGTTTCTGCATATAGCAGTTATTTATCACTCatagtctcttattttctgatcaaagatttattttatttttatagtgtgCTTATGACTTTTATACtttgttatatattgttatttatataaatacaagGTCAGAGTCAACAAGGTTATAGACTAAACTTGGATATAATCATAAAATCACTTGCTAttgataaaaaacagatttttttttttaaactttaagttaagttaaagtTTAATTGGTAGCGCCATGCTCAATTATGTACATGTACATTTCAGGTATCAAAAAGATGGAAAGATTTGGGAATTTTCCATACTGTCTGACGGCCAGTCCAAGACGGTTGACCATCAAACAGTATGTTTTTGGCTTAATAAACAGCTAGTCTTCAAAGCATGATCAACTTAAAAAAGCTAGAACATCAGTATAACCAAGTGTGAACAGTTTAGACTTGTGTGACCAGCAAGAACAAAATCAAAGGCGGCATACACTGGTCAAGAGCTGGgtaacacacagacatacatacatacatacatacatacatacatacatagagtACCATTCAAAAGTGTGGATACACATTCGtattaatatttgttgtttatttgtattatttactacattgtagattcatattaAAGCATAAAAACTATGATAAAAATATGAGGGAAGCCATATGTAGTTAGGTAGTAGACAAAAAAGTATTTGGCCCAATACACCCAAAAAatcaaaaggtgctactttgattaagtataaaatatattttgtcatGTTTAACAATTTTCTTGATGGGGTATGTGTTTCTTTAA

Function

symbol description
snx20 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Orthologous to human SNX20 (sorting nexin 20).

NR:

description
sorting nexin-20

GO: NA

KEGG:

id description
K17931 SNX20; sorting nexin-20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228194.3 True 2644 mRNA 0.40 4 14827404 14831477

Neighbor

gene id symbol gene type direction distance location
mphosph6 mphosph6 coding downstream 515 14823218 ~ 14826889 (-)
prkar2b prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465 coding downstream 94151 14718554 ~ 14733253 (-)
LOC111193055 NA coding downstream 137297 14687689 ~ 14690107 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding downstream 178153 14640001 ~ 14649251 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding downstream 208016 14614391 ~ 14619388 (-)
LOC103033621 NA coding upstream 18105 14849582 ~ 14857596 (-)
rbl2 rbl2 coding upstream 37455 14868932 ~ 14889755 (-)
irx3 LOC103035229,LOC108428748 coding upstream 133021 14964498 ~ 14967301 (-)
LOC103035545 LOC108428749,LOC105908727 coding upstream 169698 15001175 ~ 15074769 (-)
LOC103038669 kif21a coding upstream 396562 15228039 ~ 15290712 (-)
G73644 NA non-coding downstream 6928 14820230 ~ 14820476 (-)
G73643 LOC108428768 non-coding downstream 7641 14819476 ~ 14819763 (-)
G73642 NA non-coding downstream 8592 14818502 ~ 14818812 (-)
G73639 NA non-coding downstream 21902 14804231 ~ 14805502 (-)
G73605 NA non-coding downstream 26771 14797355 ~ 14800633 (-)
G73671 NA non-coding upstream 59995 14891472 ~ 14893864 (-)
G73674 NA non-coding upstream 69191 14900668 ~ 14902293 (-)
G73675 NA non-coding upstream 70911 14902388 ~ 14904820 (-)
G73679 rpgrip1l non-coding upstream 77630 14909107 ~ 14910680 (-)
G73694 NA non-coding upstream 249580 15081057 ~ 15081299 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 30121 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 281868 14542196 ~ 14545536 (-)
G73172 NA other downstream 2206048 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2262426 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2775915 12048626 ~ 12051489 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 292337 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 549852 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 926826 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1635612 16467089 ~ 16470323 (-)
nrg4 NA other upstream 3045549 17877026 ~ 17885395 (-)

Expression


Co-expression Network