irx3 (LOC103035229,LOC108428748)


Basic Information

Item Value
gene id irx3
gene name LOC103035229,LOC108428748
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14964498 ~ 14967301 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228201.3
ACGCGAAGGCTCCTGCTCAATCCTGCGAGGAGGCgatgtgtgtgagcagtgtgatgtgtctgaggagtgtgtggagtgtacgGAGCTGACCTCagtccccccacacacacagcactaaaGCGCGTCCGCGGCAGGACAGGGCAGGGAGCGCGCGCTGCTCATCGGCCCGTTGGTTTCTCGCGGATTTCTGGAACTCAAAGGAAAAGCGCTGCATCTCCGCACGAGCCTCTCCGGACAGGATACTCCGGACAGGAACATGTCCATCCCGCAGCTTGCCTACAAGTACGGCCGGGCGCTGTACCCCGCCGAGGCCCCCCACGGGCCGCCCGGGGGTCTGTCCGGGGCACTGGCCGCCCTGTACGGAGCGCCCTTCAGCGGCAGCAGCCACGGATACAGCGCCTTCCTGCCTTACTCCGGCGAGCCGGCCGCGCTCGGACACCTGGCCTCTCCATACGAGCTGAAGGACAGTCCAGGCATCCAGCACCCAGGCTTCCCGCACGCCCACGCGCCCTTCTTCCCCTACGGCCACTACCAGCTCGGCGACCCCTCACGGCCCAAGAACGCGACCCGCGAGAGCACGAGCACCCTGAAGGCCTGGCTGAGCGAGCACAGGAAAAACCCGTATCCCACCAAAGGCGAGAAGATCATGCTGGCCATCATTACCAAGATGACCCTCACACAGGTCTCCACCTGGTTCGCCAACGCCCGCAGGAGACTGAAGAAGGAGAACAAGATGACCTGGGCTCCAAAGACCAGGACAGACGAAGATGGGAACGTGTTCGCGAGCGACAACGAGGAGGGCGAGGAGGAGGACAAGAGGGACGATGACGACGACGAGGAGGAGATCGATCTGGAGAATATCGACACCGAAAACATTGAGAGCAAGGACGAGCACCCCGATTACCGGGGCGACCTTAAACCGGACTCCAGAGGGGCAGACAGGAGCGACTCGGAGGAGTTCGAGGACACGCAGGGGCATGAGAAAAGTTTCATAAAGAGCGTGATAAAGGAGAGCAGGGACAGTACAGCACAGGGGACACGGGACGACCACAGCAAAGGACCAGCAGCCGAACCTTTGGGCAATCTGAGTCCACCGCAAAAGCCCAAAATCTGGTCGTTGGCTGAAACCGCGACTACACCGGACAACCCGAAAAAGTCCCCGCCGCTGCTGAACAGGAGCCACGGGCCACTGCAGAGCTCGGTGGGGAACCTCCACAACTGGACTAAAATGGCCTTTTCAGCCCAGCACATGTCTTTAAGTAACCATTACCTGGGACTTAAACACGCGGCCAACAGCACAGTCTCAAACCAGCACATGGACAGCAGGACTCACGTCTTATGAGCCGTTTCTAATTGACAATGGActctgaatattattaatattattattatttctttttcgtAATGTTTTGATATTCTCCAtctaaatgtaataattttcACACCACAAACACTGCTTTGGTTTTccgaaattatataaaaatacctattgattttttaaaaggaaaaaaaaacccgacacatttaatttgtaatagACGGATGTTGCCTAGCACTTCCCTTCAGATGAGAGTATAATAGAGTAAAGGTTTATATTGCTaacttatgaacattttcaccAGGTTTATTTATCAGATCACGCTATTGTCTCATTTATCTCTGgacacatttctttttttttattcacgaTCTGCATTAGttccattattttatttctatctctattattgtttttatttttgtgtttgttgcaGAATAACACACCAAGCCAAAATTAAGCACCGACCCATTCTCTCTGTGTGAGATCTAAAGAGTGCATGTTGCCTTTTTATGAGCACTAATGAGCCTCAATCGCTCTAATCTTGTTTTagacctttacacacacacaaaacacacacacacacacggacgtAACTAAATGTGTTTTCGcattttccagagcttttttttttaaactgcagatTGCATTCGGTAATTTACTCCAAATGCAGCGCTTTTAGAAGTGTATTTTGATCGCAATTCGTTCCCTTTAGCACAcacaaaaatgcattaattttagaaaaattaaaacacctATATTGACATATATTTTCCCAACATACATCATTTTATACTTGTCATGAAGGCACGTTGTGTTGAACCATTTCATTCGTTGCTTTTCTAACTGGTGTTCACTACGGAATGGAGTAGGTTGTGTTATTGGTTTTGTAAATGTAAGATGAATTTTACCTACTTGAAAATAATATTGTacaaaactatattttaaatattaaaaacgaAGACACACTTTTATCCAACTGAA

Function

NR:

description
iroquois-class homeodomain protein IRX-3

GO:

id name namespace
GO:0039023 pronephric duct morphogenesis biological_process

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228201.3 True 2302 mRNA 0.48 2 14964498 14967301

Neighbor

gene id symbol gene type direction distance location
rbl2 rbl2 coding downstream 74743 14868932 ~ 14889755 (-)
LOC103033621 NA coding downstream 106902 14849582 ~ 14857596 (-)
snx20 snx20 coding downstream 133021 14827404 ~ 14831477 (-)
mphosph6 mphosph6 coding downstream 137609 14823218 ~ 14826889 (-)
prkar2b prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465 coding downstream 231245 14718554 ~ 14733253 (-)
LOC103035545 LOC108428749,LOC105908727 coding upstream 33874 15001175 ~ 15074769 (-)
LOC103038669 kif21a coding upstream 260738 15228039 ~ 15290712 (-)
fibin LOC108442682 coding upstream 464172 15431473 ~ 15434025 (-)
ano3 ano3,LOC107677449 coding upstream 493386 15460687 ~ 15543780 (-)
LOC103042382 LOC108442690 coding upstream 596670 15563971 ~ 15571540 (-)
G73679 rpgrip1l non-coding downstream 53818 14909107 ~ 14910680 (-)
G73675 NA non-coding downstream 59678 14902388 ~ 14904820 (-)
G73674 NA non-coding downstream 62205 14900668 ~ 14902293 (-)
G73671 NA non-coding downstream 70634 14891472 ~ 14893864 (-)
G73644 NA non-coding downstream 144022 14820230 ~ 14820476 (-)
G73694 NA non-coding upstream 113756 15081057 ~ 15081299 (-)
G73697 NA non-coding upstream 118193 15085494 ~ 15085724 (-)
LOC103036159 NA non-coding upstream 118479 15085780 ~ 15111364 (-)
G73760 NA non-coding upstream 221293 15188594 ~ 15189335 (-)
LOC111193098 NA non-coding upstream 347336 15314637 ~ 15318087 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 167215 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 418962 14542196 ~ 14545536 (-)
G73172 NA other downstream 2343142 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2399520 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2913009 12048626 ~ 12051489 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 156513 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 414028 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 791002 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1499788 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2909725 17877026 ~ 17885395 (-)

Expression


Co-expression Network