irx5 (LOC108428750)


Basic Information

Item Value
gene id irx5
gene name LOC108428750
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15075459 ~ 15081023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228203.3
cacacacacacacacactcactctctctctcctctctcaatCCGGGAGGAGAATGAGTGTAGAGCGGCGCGAGGAGCGGACCTGAAGGAAACCCGGAGAGCAGCTGAGTCCAGATTCCGCTCCAGATCTGTGCGCGCGGAGCTGAAGAGCCGATGTGAGCGCGCTGCGTCCGGGAGAAGCGGACCTGAGGGAGACCCCgcggcattcttccagcatggCTTACCCTCAGGGCTTTCTGTACCAGCCCGCCGCCCCCCTCGCCCTCTACTCCTGCCACCCGCCCTACGGAGCGCGCGCCGAGGAGCTCGGCAGGTCCTCctcgtcttcttcttcatcttcttcctcctcatcttcctcttcGTGTCCTTCTGGATCTGCCTTCGCTCCGTACGCAGGATCCGCGGCGTTCACGAGCCCTGCGCCCTTCAGCGCGCTCCAGTACGGAGCGGAACCGGCGGCGCTCTCCGCGTTCGTGGGCTCTCCGTATGACCCCGGTCCAGGTGTGGGGGGCTCTGTGGTGTTCCCCCCGTACGGCGGCGCTCTGGGTCCGTTCCCGGCGCTGGACCCCGCTTACCGCAAGAACGCCACGCGCGACGCCACGGCCACCCTGAAGGCCTGGCTGAGCGAGCACAGGAAGAACCCGTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACACAGGTCTCCACCTGGTTCGCCAACGCCCGCAGGAGACTGAAGAAGGAGAACAAGATGACCTGGTGCTCCCGGAGCAGGAGCgaggacgaggaggaggaggagaacatcgACCTGGAGAAACACGAGGACGACGAGGAGCCCCTTAAAGCCAGCGAGACGACCCCCGAGCCCGGCAAGGAGTTCGgTGGTCTTCCTGTCAGCCCCGTGTCCATGACGTGTGAGGGTCTCACTAACAGCCCCCCTACTGAAGCGGACCGTATAATAATAGAGTCTGAGAAACGAGCCGCGTGCGCGTCCCCGCGGCCCACCGCAGCCCCCTCCCCCGAGCCTTCGGCTTCCACACAGCCCCCCGAGCCCGGACATCCAGCGCAGCCCACGAACCCGCCCCCCAAACCCAAACTCTGGTCTCTGGCCGAGATGGCCACTTCGGACAAGGGAAGCAGCGAGCGCGCGCAACCGTGCGTCCGCGCGCCCAGCCCCGCGCCCTTATCGCCCCCCCGCGCGCCCCACTGCCCGTTCCCCCGGGTTCAGCACCTGTACTGCGCCCCCGCGGCCTTCTACCCCGCCTTCACGAACTACAGCCCCGCACACAGCCTGCCCCGCGCGCACGGATTAAGAGCGGGGGTCGTGCTAAGGGAGAGCGCGCTCAGAGCCCCCACGACCACGGACACGCGCAGAGAGTCGGCCTTCGAGCACAGGAGGGGTGTTAAATAGCCCCGCCCGCCCCCTGTCAGCTACTGCATCTCCCATTCCGCGAGGAGAACCGAGCTCTGTCCAGAACAGACTGAACAACAGAGCtgcgcgtgcgtgcgtgtgacTGACTGCGCGcgactgtgtgtttgtgcgcgAGGCCTTTTTGTATTCAGAGGGGAGTTTTATGAAATGatataaagttataatattgCTTCTTCACTAATCGATATCGATCAGTCAGTGTAAATGAGGAGGAGCTGAGCAGGAGGCCAAAGTAAACTGACTGCTTCACAAGAAAAAATCCACATTAAAGCTTTTATGGACATTGTCTGCCATTCACAGAATTTATTATTTCatgtataaaaagaaaatgtcctcgttttatctttttttttttatttatctcatgTGAGATAAATTATAAGGAATCAGAGAATTTTATAGACCAGCATTTTTgaacctacactgtaaaaaaaagtcaggagaaaaaaaatggggaaatattacaaagttttttttttttttttttacagtgcaataTTTATTCTCAGCATATGTCCACTGACTTCTTCAATGAGCTAAGTGTGTTTTcattacaaaaaatgtttaaattattgtttacaGTTATAAACCATATGCTACAatgagacagacacacagcaaatttgtcagtgttaaataaacaatgtgagtgtaaaaaaggttaaagtgtttatttaacactggcaaatttaCATTGCAGAGATTTGCTGGAGCATTCCTTTATTTTCTGCCAAAACATAATTACAGTGAATGGAAAGGATACTTATCTACCTATTCAGTAACAGATTAGATTGTTTGTATGGCAAATAAATTctacattgtttggtttgaCCTGACCAATGGAGTGACAACACATCTATTCAGTATAGTAGCCTTTGCTTTTTTCATGCAAAAAACAGCTGCATTTTATAACATAATTTAGCAGAATCTTCACATCAAGTTTGATGCGTTTTGCCTTCTGTGCTCTGTAAACATAGCTCTCATAAACTTCCACTATTTCTTTTCTCTGCTAGCTGTCCACATCAGTGCTCCTCTAAAAAGTGCTTATTAGTGAGGGAGACTATAGCTTGCGGTTGTTTGTGGACATAAACAGATTAGAATTAACTTAGACAATTTTCAGCTCTGCTCTGAGCAGTATTTTCTTAAACCTTAAGGTTTGTGTTCTGCTTTGAATAAGATGAGATGTCCCTCTGCCACACGGATGTTTGACGCAACCATGACAACagagctctgattggtcagccagatttaaatgcatctttaatttaattgatgAGTCCATCAATTTTGGACTCGTGAAAGAATCATTTATATGCATGTGTTTGTTTTCAAAACAAATTAGGCTTGGTGTGAATAGGCcttaattttactgttttaaaaggagtttttttttttttttactatctcAGTATAGCTAAATGACTACAAAGTAAAGTAATTTAGGGTGGATTgatgcaaaatgttttttttttctagagaaATGAAGAGATCCCAGACATCCGAAGCACTTAACCTTACAGAAAATGGTCTAACGGTCCAATgcattattttatgatttttttgacTGTTCTGTTATTGTTGTATAAGGTGTATAAGGTTCGGTTGTAAAATGAGTTATTAATACATAAAGAAAGGTATGGTTTCCCATACAGGAATTAAACATAGTAttggactacacaacatttcaaatagagatttctattgaAAGGAATATATAGTCTATGATTGAGCTTAATCTGTGTCTGTTAAACTGCCCAAAAAGTTTAAAGCAGATCCACTATTTTACTGTATTGAAATTATGCCTTGAATTGGGTCACTTATATAATTTCAAGTGTCACATCATCACCGTTCTTGTTCCTGGTAAAGTAAGAAAACTAAatgcaagtgtttttttttctgtgctgctACAGGACACACGCCTGAAATCCGAACCCTACACTGTGACTACTGCTTTCTTTCTAAATAATGAGAACTCTCATAACATTC

Function

NR:

description
PREDICTED: iroquois-class homeodomain protein IRX-5-like

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228203.3 True 3421 mRNA 0.48 4 15075459 15081023

Neighbor

gene id symbol gene type direction distance location
hsd17b2 NA coding upstream 252125 14814804 ~ 14823334 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding upstream 262961 14801718 ~ 14812498 (+)
LOC103031607 LOC108274970,LOC108428766 coding upstream 278226 14788767 ~ 14797233 (+)
amfr amfr,LOC107566269,LOC107679970,LOC107752457,LOC107723982,LOC107659867,LOC107555700 coding upstream 288551 14776711 ~ 14786908 (+)
LOC103030248 NA coding upstream 300255 14757323 ~ 14775204 (+)
lrrk2 lrrk2 coding downstream 227506 15308529 ~ 15351344 (+)
LOC111193056 rsph3,LOC107580271 coding downstream 274712 15355735 ~ 15357894 (+)
LOC103041261 clpx,LOC108442679 coding downstream 281745 15362768 ~ 15380544 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 322819 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 355376 15436399 ~ 15449870 (+)
G73598 NA non-coding upstream 230795 14844445 ~ 14844664 (+)
G73566 NA non-coding upstream 398665 14675873 ~ 14676794 (+)
G73532 NA non-coding upstream 427897 14646443 ~ 14647562 (+)
G73527 NA non-coding upstream 436906 14637947 ~ 14638553 (+)
G73529 LOC107551388,LOC107676462,LOC108428784,LOC107701063,LOC107754325 non-coding upstream 456135 14614418 ~ 14619324 (+)
G73710 NA non-coding downstream 42849 15123872 ~ 15126987 (+)
LOC111193097 NA non-coding downstream 105226 15186249 ~ 15187955 (+)
G73715 NA non-coding downstream 107872 15188895 ~ 15189386 (+)
G73799 NA non-coding downstream 284620 15365643 ~ 15368383 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding downstream 301055 15382078 ~ 15383583 (+)
rpgrip1l rpgrip1l other upstream 154456 14891534 ~ 14921003 (+)
G73533 NA other upstream 425908 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2177528 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4448495 10272919 ~ 10626964 (+)
G72621 NA other upstream 4993319 10078579 ~ 10082140 (+)
svip svip other downstream 491279 15572302 ~ 15577533 (+)
G74169 NA other downstream 1205653 16286676 ~ 16288329 (+)
G74649 NA other downstream 3373828 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3389681 18470704 ~ 18479345 (+)
G74832 NA other downstream 4001793 19082816 ~ 19085556 (+)

Expression


Co-expression Network