LOC103040017 (LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590)


Basic Information

Item Value
gene id LOC103040017
gene name LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15403842 ~ 15418547 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228215.3
ccccacccccaatCCTGTCTGTGCagggccagcagcagcagcagcagctagagagagagagacatacggGGCGGGCTGGGCTTTGTTATTAGCCTACATGGCGGCGGCTCTGAGATGATAGGAGCTTCTCCTGCATGGCTGCTTTACTGCTGACcaggaggaagaggaaagaggaagaggaggaggatggagatgatgtgatgattacagcggcagtagtagcagtagtggaGCGCGGCAGCTGAGCAGGTcgaagaggagaggaagaggagagcgaggagaaggaggaagagcagcagcagcatcaggaggaggagaggaggagagggaagATGGCCACCATGAGGCTGCTGACGGCGTCAGGTCTGTTTCTGGCCTTCTGCTCGCTCGCGCTGCTCGCCGTGGCCATCGGCACGGACTACTGGTACGAGACGGACGCGCGCAGACACCGCGAGCGCTGCAAGAAGTACGCCAGCAAGAGGACGGACCCCGGCTACATCTACATCTCCAACCAGAACCTGCCCCTGCGCATGCTGCCCCGGGAGGGCGGAGGGGGCAGCGGCGGGGTGTCCGGACTCCAGCCCGCTCTACTCCGGGCCAAGCGAGACTTCCTGCCCCCCGCCTCGGCCGTGGAGTCCCGCTGCAGCCGGAGGTACAACTCCACAGCCACCGGGCTCTGGAGGAAGTGCCACAGGGAGGGCTTCGACCAGGAGAACGAGGACCTCATATTTAAAGGTCTGCTTCAGCGCTGCACACCGGTGAAGTATTACTACTCCTCGTCAAATATTCCACGCAATCTCCCAACGAACATCACAAAAACAATACGACAAGACGAGTGGCACGCTCTGCATTTGCAGAGGATGACTGCAGGCTTCATAGGAATGGCAGTATCCATCATCCTGTTCGGCTGGGTCATTGGAGTGCTGGGCTGCTGTAAGCACAATGAGCTGATGCAGTATGTAGCTGGGCTGCTCTTTCTAATGGGAGGGACCTGCTGTATCATCTCTCTTTGCACATGCGTGGCTGGTATAAACTTCGAGTTGTCGCGCTACCCTCGCTACCTGTACGGCCTGCCCGAGGACATCAGTCATGGATACGGCTGGTCCATGTTCAGCGCCTGGGGGGGCCTGGGCCTCACACTGCTGGCCGGCTTCCTCTGCACGCTGGCCCCCTCTCTCCACAGCCCACAGACCACCACTGTACACAAACCTCGGCAGGAGAACGGCATGGTGTGACGGTCTTAACGGGATAACATGTACTGAACTAACTAACAAACagacaattacacacacacacacacacacacacacacacatacatacacacatacacacatacatatgtaCTGGAGGATTTACTCACAAAAAAGCACATGAAccctcataaacacacacacacacacacacacacactccttacagAGAGGAACCAGGACCCTGTGTGCCCCATAAAACCATAACAGGCGATGGTTGGATTTACGGggacagaaaataaaagagtgaaaataaacacaagaaCAGGAGCTGAACTCAGTGTGAGCTGCACAGAAACAGAGGAATTTACAGACGAGCACAAAGAGACAGAGACCGCTTTACTCCTAAAGCCCTCTTTTATTCTAGATATTTTTCTGTTCATAtggtgctctctttctctccctctttctacatctctctttctctctttcctaatctctctccctctctcttacctctctctgtcttttctgtctctcttacttctatctcactctttttctctccatctctagtTCTCTCTATgttcctctgtttctctctctgtctatttctccCTATGTTTCTAGTTCTAaaactctctctgttttttacattttctttcttactctatacatgtttttttcatatctCTAGTTCTAAAACACTCTGTTTTTCATCCTTTCTCTCTAATTTGCTTTtaatttctgtctctgtctatttctttctctatgTGTCAATTTCTCATGCTCTGGCTAAGTCTCTCTCATGCTTTCTTTGTACATCTTTGTCTGACACtgatgtctctctttttctccttataCTTCTCATGCTTTCTACGTCTCTATCTATTTCTATCTGTCAATTTCTATTATTTCATAATCATatatttgtctctttctctctaggcCTCTGTCCacatctctttatttctctctttctatttctttctctctctctgtctctctctctctctctctctctctctctctctccatgccCGTGTCCCAGTCTTTTTCCCCAAAGGATTTCAAAGTGGATTTCAGTCTCATATGATGACAGATTAATCTTTTAGTTGAATAAAATGTTGCGTGTTTTGACATTGCCTGCTGCATAGAAAAGAGgtaatgaaaaaaagagaaaacaagcaaagaaacaaacaaaaaaaaacctaaacaaaagaaacactaTTTCAAGTGTCTTCCTGTACATGTTCTTTCATTTGTGGTTTTAGCAACGTTATGACAAGTAAATGACCAGAGTAAGAGCACAATTCAGAGAGGAGGAGTTGATGTTTAATGAGTGTTATAAGACAGTCTCTTCCTGATGCAATGTGTGACTGCGTACCTCTGACTTAAGAAAGGTTTGTAGCAGTGAACGTCTCAAGAGACTGAAAAGCAGTATTGCGAGGCTTTGGGAGGAAATTATTTGTTTTGACATGATTTATCAATTTGTTTTGtaataaaacattcataaaTTATA

Function

NR:

description
LOW QUALITY PROTEIN: transmembrane protein 178B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228215.3 True 2714 mRNA 0.47 5 15403842 15418547

Neighbor

gene id symbol gene type direction distance location
LOC103041261 clpx,LOC108442679 coding upstream 23298 15362768 ~ 15380544 (+)
LOC111193056 rsph3,LOC107580271 coding upstream 45948 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 52498 15308529 ~ 15351344 (+)
irx5 LOC108428750 coding upstream 322819 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 580508 14814804 ~ 14823334 (+)
slc5a12 slc5a12 coding downstream 17852 15436399 ~ 15449870 (+)
fancf NA coding downstream 206281 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 298518 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 321015 15739562 ~ 15755106 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 367406 15785953 ~ 15798451 (+)
G73801 NA non-coding upstream 18718 15384855 ~ 15385124 (+)
G73800 NA non-coding upstream 19605 15384023 ~ 15384237 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding upstream 20259 15382078 ~ 15383583 (+)
G73799 NA non-coding upstream 35459 15365643 ~ 15368383 (+)
G73715 NA non-coding upstream 214456 15188895 ~ 15189386 (+)
G73817 NA non-coding downstream 10201 15428748 ~ 15429645 (+)
G73819 NA non-coding downstream 36388 15454935 ~ 15457857 (+)
G73832 NA non-coding downstream 152722 15571269 ~ 15629178 (+)
G73891 NA non-coding downstream 247801 15666348 ~ 15669769 (+)
G73941 pkp3,LOC107589311 non-coding downstream 345993 15764540 ~ 15765125 (+)
rpgrip1l rpgrip1l other upstream 482839 14891534 ~ 14921003 (+)
G73533 NA other upstream 754291 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2505911 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4776878 10272919 ~ 10626964 (+)
G72621 NA other upstream 5321702 10078579 ~ 10082140 (+)
svip svip other downstream 153755 15572302 ~ 15577533 (+)
G74169 NA other downstream 868129 16286676 ~ 16288329 (+)
G74649 NA other downstream 3036304 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3052157 18470704 ~ 18479345 (+)
G74832 NA other downstream 3664269 19082816 ~ 19085556 (+)

Expression


Co-expression Network