slc5a12 (slc5a12)


Basic Information

Item Value
gene id slc5a12
gene name slc5a12
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15436399 ~ 15449870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228221.3
agaaaataaaaggtataatattggttcTTTGATAATTAATTAGGGATAAGTATCCTAGTATTAGGGACTTTCACCCCTCACTGCTTTGTTCTATTCCTGCCTCTGCTGAAGTGTCTCGTGTGTATGGggtgatgtgtgtgtaatgattaGATCTAGTGGGAGGTCCCACAAACATTCTGTCTCTGTCCACATGTTGAAAGGCACTCagagcagaaaaatagccattCAGCAAAAAAGACCTCAAAGCGTTCCCTGGGAGACTGTAGCCCTGCCAGCGCCAACTTTAGTAATTACCAGATATACGCAAAGTCAACTTTCTAACAGCCTTGCAGAAAGAGTAAATTAAACCAGCGCCTCAGCCCTTCACGGTTGCTTCATCAGCGCTTTGGTGCCAGAATGAACTATGAGTCAGAGAATAGATTCTGTCCAAACATTTACAAAGGCCTCTGGGAAACATTACCAATTAAATGACAGgtgacagtaaaataaacaatatccTCTAATTACTACAAATTTACATGGATTAGTTAATCTCAGGTTCACTCAGTCAGGTCCAGTTTGCTCTGGGGTTGGCAGCACATTGGCTGAAGTTCATATTCTACAATTTGTACGGataaaaacaaatgtgtaaTGAAAATGGGAGCACACAAAAAGATACAGTAACTAGGATGGGACTAATGGCTAATAGTTAATGACTAATGTTAGTGTCTTCTCATGTGATACCTGTCAGACACGTTCTTCAAATCATTCACCGACTCTCATTCACAAGACTTGAGACACCTGGGATTACAGTTATATATCTAATATACAGTTATATTCTGTCCATCAAACTGTGgacaataattttataatattccAGGCATAGTTTAGACTACATTATCACTAACTAATCCACTATGGTTCTCCAGGACCACTCTGTGGGGACTTTCCAAACAGGAGACTATGTTGTTTTCGCCTGCCTGTTTGTGGTTTCTTCAGGTATTGGAGTCTTCTTTGCtgtaaaagaaaggaaaaaggcTTCATCCAGGGAGTTCTTGGTCGGGGGCCGCCAGATGATGCGGCCAGTGGCGCTCTCCCTGACGGCCAGTTTCATGTCAGCAGTGACTGTTATTGGAGCTCCGTCAGATGTGTACCGCTTTGGGGCCTCGTATGTTATCTTTGGAATCGCCTACACGTTTGTGGTCATCTTAACAGCAGAGCTCTTCCTTCCTGTGTTCTATCGCTCAGGCATTACCAGCACTTATGAGTATCTTGAGCTACGTTTCTGCAAACCAGTCCGCATAGCTGCTACTCTCATTTATATGGTGCAGACGATTCTGTACACAGGAGTGGTGGTTTATGCTCCGGCTTTAGCTCTCAATCAGGTGACAAAGTTTAATCTGTGGGGCTCCATCATCGCCACTGGTGTTGTCTGTACCTTCTACTGCACTCTGGGAGGACTGAAGGCTGTAGTGTGGTCCGACGCCTTccagatggtggtgatggtggttgGTTTTCTCACAGTGCTGGTACAAGGCTCTAACAGTAGTGGAGGCATTGCTGCTGTATGGAAGACAGCACAGGATGGAGAAAGATTGGACATATTTAAttttgataTCAGTCCTCTGAGGCGTCACACATTCTGGACAGTCACTATAGGAGGCATGTTCACATGGCTGGGTGTGTATGGTGTGAACCAGTCCACCATTCAAAGGTGTATTTCTTGCAAGACAGAGAACCATGCTCgctgGGCTCTGTATCTGAATCTGCTGGGTCTCTGGCTGATTCTGTTCTGCGCTGTGGTTTCAGGACTCATCATGTATGCTTTCTATGCTGGCTGTGACCCCTGGACAGCTGGCTACGTGTCTGCTCCTGACCAGCTTATGCCATACTTTGTACTGGATATACTGGGCCGTTATCCAGGTCTGCCTGGGCTGTTTGTAGCCTGTGCGTTCAGCGGGACCCTCAGCACAGTGGCTGCCAGTATCAACGCTCTGGCCACAGTGACGTACGAGGATTTTGTGAGGCAGTGCTGCGGAGACATTTCCAACCGAGCCGCTACCTGGATCAGCAAAGCACTGTGTGTGGTGTTTGGAGTAGCGTGCACCAGCATGGCAGTGACAGCCTCATACATGGGAGCGATTGTGCAGGCTGCTCTCAGTATTCACGGCATGTGTGGAGGGCCCATGCTCGGTGTGTTCTCTCTAGGAATCCTTTTCCCTTTCACAAACTCTAAGGGGGCTATAGGTGGTCTGCTTCTGGGCATTACTCTCGCATTCTGGGCTGCGGTGGGAGCCTTCATTTACCCTGCCTCCCCCAACTACACAAACCCCCTCTCTCTGAGCACTGAGAACTGTACTCTACTGAACAgcaccgctgctgctgctgctgctgctgctgctgctgcagtcacACAGACTCCTCTACTGATCAGCACAGCTGCCAGCTCAGACAGGTCTGTTCTGGCTGAGTCCTGGTACTCCATGTCCTACCTATACTACAGCACTGTGGGCTTTCTAGCCACAGTCATAGGAGGCTTGCTAATCACAGTGCTCACAGtcccCTCTAAGCCGCAGGATGTGAAGCCGGGGTTGATTCGGCCAGTGTGTGACCTCTTCTGCTTCTGCTCAGAGAAATACAGGCGCTTGTGCTGGTGTGGGGTCAATCATGCTGAGGAGAAAATGGATCTGGCTGATCTGGACTTTGGAACCGCATGGGAGATTCACCCAGATCAGGACAAAATAATTAAGACTGGGAGAAATGGGAAAAAGCAAAGTTATGACTTGCAGGATGAGGCATACAACAATATTGCTTTTGTTCCAGACACAACCGGACAAGTTATGTCTGGTAACTAAAAGAAAATTTGGTCATGTTTAACAGCAGGAAAAAAAGCCCTGaatgagatttttaatttgtaatttttaaaaatgtatttcttccTATAGAGTGAACCTCCCCTGATCGTATGAGGGGAGCAGCACTGTTGGCCCACTAATttctttgcctgttttttttctctctagtTTCTCTCCATGTTTGTTTATCTCACATTGCTTTGGTGCTCTGGTTATTATCTGGACTCTCTATTGTTAATTGACTTTGCAATATTAAACCAAAGTACTGGTTCATATCTGCAGGTGTACACTTTATCTCACAAACATTACAGGCACATGCATTTCTAACCATTTTTTCTAACAATGTTTGACCATAAGAACATAGGACGTACCGGTATAAAGATTGTTAAGGCTAGTCAACTATTAATATAATTCAATCTAAATGATCACAAGCACATGAGCTGATATgttatgtttcttttttcactGAAAAAGAATTTCataaattaaaaactgaaactgTACTGTTTTTGCTGTGACTTAACCAGTAAACCAGTAAAATATTTGAGCCAAAGTAACCAGAAGCATAATACGCAAaaccaaaaaatgaaaaacactccAACCACTTTTGTTAAAAGATACAATCAatgatttattacagaaaagAGTGATATCCAAATTTATGTTACAGACAGTTTTTgtacaattttattttcatattcattttttttacatgtaaacaGGGATGGTGTAAACAAAGCACATTGCTGATACCATTAATGTCACAATAGTACTGAGTACAAATCAGAATGTGCTGTGTTGTTCTATTGAAACGCTCTACCCTCTTCAAACACGACTCTCAGCTGGACTTCTGTCTACTATTCTAAGATCAGAAGTCAGAGGgctgttatttaaataattctatTAATTGCAGCCCAAGTGAGTGAGTACATATTGCCACTAACCCATTATGCAATAACCATTACATCATTGCAATGTTGCATATCACATTCTTGCATATTAATAAACTCTCCCAATAAACTGCTT

Function

symbol description
slc5a12 Enables secondary active monocarboxylate transmembrane transporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gut; immature eye; nervous system; neurocranial trabecula; and pleuroperitoneal region. Orthologous to human SLC5A12 (solute carrier family 5 member 12).

NR:

description
sodium-coupled monocarboxylate transporter 2-like isoform X3

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228221.3 True 3860 mRNA 0.43 16 15436399 15449870

Neighbor

gene id symbol gene type direction distance location
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 17852 15403842 ~ 15418547 (+)
LOC103041261 clpx,LOC108442679 coding upstream 55855 15362768 ~ 15380544 (+)
LOC111193056 rsph3,LOC107580271 coding upstream 78505 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 85055 15308529 ~ 15351344 (+)
irx5 LOC108428750 coding upstream 355376 15075459 ~ 15081023 (+)
fancf NA coding downstream 174958 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 267195 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 289692 15739562 ~ 15755106 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 336083 15785953 ~ 15798451 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 360539 15810409 ~ 15814622 (+)
G73817 NA non-coding upstream 6754 15428748 ~ 15429645 (+)
G73801 NA non-coding upstream 51275 15384855 ~ 15385124 (+)
G73800 NA non-coding upstream 52162 15384023 ~ 15384237 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding upstream 52816 15382078 ~ 15383583 (+)
G73799 NA non-coding upstream 68016 15365643 ~ 15368383 (+)
G73819 NA non-coding downstream 5065 15454935 ~ 15457857 (+)
G73832 NA non-coding downstream 121399 15571269 ~ 15629178 (+)
G73891 NA non-coding downstream 216478 15666348 ~ 15669769 (+)
G73941 pkp3,LOC107589311 non-coding downstream 314670 15764540 ~ 15765125 (+)
G73970 NA non-coding downstream 445849 15895719 ~ 15896522 (+)
rpgrip1l rpgrip1l other upstream 515396 14891534 ~ 14921003 (+)
G73533 NA other upstream 786848 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2538468 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4809435 10272919 ~ 10626964 (+)
G72621 NA other upstream 5354259 10078579 ~ 10082140 (+)
svip svip other downstream 122432 15572302 ~ 15577533 (+)
G74169 NA other downstream 836806 16286676 ~ 16288329 (+)
G74649 NA other downstream 3004981 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3020834 18470704 ~ 18479345 (+)
G74832 NA other downstream 3632946 19082816 ~ 19085556 (+)

Expression


Co-expression Network