LOC103042382 (LOC108442690)


Basic Information

Item Value
gene id LOC103042382
gene name LOC108442690
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15563971 ~ 15571540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228223.3
tccagaaaaaaacagagacagagagagagagagaaaggcggAGAATAAGCAGCAGAGCTGCGTGTGTGGTTAATAAAGGTGTAACGTTACCGGAATTATCTGGACTGTTTCTACTAATGCAGGCGtaattcatcatcatcagcatttACGCTTCTACAGTCGTCTTTCTCTGCGCCTCTGAATTCTGTTGCTGTGGAGTTTTCCCACTTTCTGTCTGAGACAGTGTCCAAGCGAAGAACCTATGGATATTATCCGGTGTCTGCGGTCTTTACTGGACCTCCATGTTCAGCTCCAAAAAGCTGTAGCTCTTCAGGGAGATATCCAGGCCCAGTTTCTTGCTCACCTTTTACAACCAGACAGTTCTGACCTGCCTCAGCTGCCCCGGCCATGTCTGGACGTGAGAGGAGATGATCTGGAGCTCTCTCTGTCCGTATTTGAAAGAGCTCTGGACAGCAGCAAACTGCCGAAGGAGCAGTGGGGCTCTCGGCTAGCACAGCTCCTGTGCGTGAAGACACTGCGTGAAGAGGGACATGATCCATCCAGTCTGCTCAATTATGAAGTTTTGAAAGCAGATGTGAGGAAGCAGGCATGGGCCTCGGAGCTTCAGAAGTGGAGGGACTTTAGTGAAGTCCAGTATGATCCCCACAAGAGTCTGCGGGACCTAAAGCTTCAGGTGGAGGAGGCAGCCAAAACGTGGCTCCAGCCTGAAAGGTGCAGCTCTGAGGAGGTGGTGAGAAGAGTGAGCCTTCAGAAGTTCCTTTCTCTGCTCCCGCCAGGTGCACAGGAAAAAACACGAAAACAACAGCCACAGAACTTGGAGGAGGCTTTGATCATGGCTGCATGCTTTATGGAAGATAACAGGGTTGAACAAGAAGaaccagagagagacagacaagtCTGCGAAACACAGACCGAGACTGGTCATGGATACTCAGGGGAGCATCAACCAGTCAGCTTTAATGAGCTGTGTCTGAAACAGGATACAGAAACCATCTTCCATCCAGTTGGTTTCAGCCTGGAAGTCAGTGGTGGGAATGAGCATTATCAAGAGGAGCAGTTTTCTGAAGCTGTGTTTAACCCTATGCTCGTAGACACCAAGCCTGTTCTGAATCTTGAAGTTGTACATCCAATCGTTAATGACTCTAATGAAATGTCACTTCCTGGTACCTGTTACGGTAACAAATCAACTACGCCTTCACTCAGGTCAGCCTATAAGAACTGTGACAGACAAGTCCAGCACCACAAGCCAGAAGCGCCAGTGAAACATGCGTTAGAGTGTCCCACATGTGGTAGTAAGTTTAAGAGGTTTGACTACCTGCAGAGACACAGGTGCACTCCTGGACAGAGCCTGGGCTGTAAGCACTGTGATCTCCGCTTCCCTACACTCACCCAGCTGACCAACCACCTCCGCATCCACCGGAAAATGCTGCGCTGCCCTGTATGCAACAAAACCTTCCGCGACCGCTTCAATCTCCGCTGCCatcaacgcacacacacagGTGAGCGTCCTCACATCTGCACTGACTGCGGCTCATCGTTTGCTCAGGAACGAGGATTACTGGAGCACCGCAACATTCATACTGGAGAGAAACCTTTCCAGTGCCCTGTGTGCAGGAAAGGCTTCCGCCACAGCCGCACCCTCTCCAAACACGTGGTTCTCCATTCAGAAGCAAGGCCTTTTGGATGCTCAGACTGTGGCAGGACTTTTAAGATTAAAGATAACTTGTATCAGCATCAGAAGAAAATACACCACAGAAAATGCTTTTAATCACACCCTACACTTGAATTGCATGTGTGCTGCTTTTATATGTGCCATAAAAATGACGAGCGACAGAATGGCAGTGACATTTGTGGGCCGTTTCtgattttatcagtgatgtTTACAAGACAATTGacacttttaatgtttttaatgtttttaaattcagtgtacaGAGGTTAATATTGACGGTGAGGCTGTGTATTGATTTTTGCTAATGGTGGTGTAGTGTAGGTCTTAATAAAATCCATCACTGAAAACCTGTGCCACCACTTGAATTTAACTAGGCATATAGGTTAGAGCCTCCTATTGGATAATTACTGGAAAAGGTTACATAACCATCGCTAAAGAGTTTGGACTCAGATTGTGTACAAATGGAGGAAATTCATTAGCATTGTTATCCCAGGAGTGGTCTACCAACAAAGATCACGCCAAAAGCAAGGAGTTATATCAGAGAATGTCcatgaactgaatctcaagagaaggTGGATCAcacagcaagacaatgacccaaaccaCTCAAGCCTTTCTACAAAAGAATAGTTAAGGAAtggaatggccaagtcaaagtacTGACTTTAATCCAATGGTAATGTTGTGGAAGGACCTGAAAAGAGCAGTTAATGTGGAGAAACCCAAAAACATCCCACAGGAATGTTCTAAAATTCCTCCAAGCCTGAACAACAGTAACTAAACTGATAAACAGTGACCGGAAACGTTTAGTTGCAGTTATTGTGGCACAGAGGGGTCACAGCACCTTTTTCACTTACAGatatattggatcattttcctcaataaataaaccaCCAATTGTA
>XM_007228225.3
tccagaaaaaaacagagacagagagagagagagaaaggcggAGAATAAGCAGCAGAGCTGCGTGTGTGGTTAATAAAGGTGTAACGTTACCGGAATTATCTGGACTGTTTCTACTAATGCAGGCGtaattcatcatcatcagcatttACGCTTCTACAGTCGTCTTTCTCTGCGCCTCTGAATTCTGTTGCTGTGGAGTTTTCCCACTTTCTGTCTGAGACAGTGTCCAAGCGAAGAACCTATGGATATTATCCGGTGTCTGCGGTCTTTACTGGACCTCCATGTTCAGCTCCAAAAAGCTGTAGCTCTTCAGGGAGATATCCAGGCCCAGTTTCTTGCTCACCTTTTACAACCAGACAGTTCTGACCTGCCTCAGCTGCCCCGGCCATGTCTGGACGTGAGAGGAGATGATCTGGAGCTCTCTCTGTCCGTATTTGAAAGAGCTCTGGACAGCAGCAAACTGCCGAAGGAGCAGTGGGGCTCTCGGCTAGCACAGCTCCTGTGCGTGAAGACACTGCGTGAAGAGGGACATGATCCATCCAGTCTGCTCAATTATGAAGTTTTGAAAGCAGATGTGAGGAAGCAGGCATGGGCCTCGGAGCTTCAGAAGTGGAGGGACTTTAGTGAAGTCCAGTATGATCCCCACAAGAGTCTGCGGGACCTAAAGCTTCAGGTGGAGGAGGCAGCCAAAACGTGGCTCCAGCCTGAAAGGTGCAGCTCTGAGGAGGTGGTGAGAAGAGTGAGCCTTCAGAAGTTCCTTTCTCTGCTCCCGCCAGGTGCACAGGAAAAAACACGAAAACAACAGCCACAGAACTTGGAGGAGGCTTTGATCATGGCTGCATGCTTTATGGAAGATAACAGGGTTGAACAAGAAGaaccagagagagacagacaagtCTGCGAAACACAGACCGAGACTGGTCATGGATACTCAGGGGAGCATCAACCAGTCAGCTTTAATGAGCTGTGTCTGAAACAGGATACAGAAACCATCTTCCATCCAGTTGGTTTCAGCCTGGAAGTCAGTGGTGGGAATGAGCATTATCAAGAGGAGCAGTTTTCTGAAGCTGTGTTTAACCCTATGCTCGTAGACACCAAGCCTGTTCTGAATCTTGAAGTTGTACATCCAATCGTTAATGACTCTAATGAAATGTCACTTCCTGGTACCTGTTACGGTAACAAATCAACTACGCCTTCACTCAGGTCAGCCTATAAGAACTGTGACAGACAAGTCCAGCACCACAAGCCAGAAGCGCCAGTGAAACATGCGTTAGAGTGTCCCACATGTGGTAGTAAGTTTAAGAGGTTTGACTACCTGCAGAGACACAGGTGCACTCCTGGACAGAGCCTGGGCTGTAAGCACTGTGATCTCCGCTTCCCTACACTCACCCAGCTGACCAACCACCTCCGCATCCACCGGAAAATGCTGCGCTGCCCTGTATGCAACAAAACCTTCCGCGACCGCTTCAATCTCCGCTGCCatcaacgcacacacacagTGATCTAAACCcagctgagatggtgatttgggatgagct
>XM_022672190.1
aaacagagacagagagagagagagaaaggcggAGAATAAGCAGCAGAGCTGCGTGTGTGGTTAATAAAGGTGTAACGTTACCGGAATTATCTGGACTGTTTCTACTAATGCAGGCGtaattcatcatcatcagcatttACGCTTCTACAGTCGTCTTTCTCTGCGCCTCTGAATTCTGTTGCTGTGGAGTTTTCCCACTTTCTGTCTGAGACAGTTTTTGTCTTTCCAGTTCACTTCATCagcttttcctcttttctttctgcTCCAAGTGTCCAAGCGAAGAACCTATGGATATTATCCGGTGTCTGCGGTCTTTACTGGACCTCCATGTTCAGCTCCAAAAAGCTGTAGCTCTTCAGGGAGATATCCAGGCCCAGTTTCTTGCTCACCTTTTACAACCAGACAGTTCTGACCTGCCTCAGCTGCCCCGGCCATGTCTGGACGTGAGAGGAGATGATCTGGAGCTCTCTCTGTCCGTATTTGAAAGAGCTCTGGACAGCAGCAAACTGCCGAAGGAGCAGTGGGGCTCTCGGCTAGCACAGCTCCTGTGCGTGAAGACACTGCGTGAAGAGGGACATGATCCATCCAGTCTGCTCAATTATGAAGTTTTGAAAGCAGATGTGAGGAAGCAGGCATGGGCCTCGGAGCTTCAGAAGTGGAGGGACTTTAGTGAAGTCCAGTATGATCCCCACAAGAGTCTGCGGGACCTAAAGCTTCAGGTGGAGGAGGCAGCCAAAACGTGGCTCCAGCCTGAAAGGTGCAGCTCTGAGGAGGTGGTGAGAAGAGTGAGCCTTCAGAAGTTCCTTTCTCTGCTCCCGCCAGGTGCACAGGAAAAAACACGAAAACAACAGCCACAGAACTTGGAGGAGGCTTTGATCATGGCTGCATGCTTTATGGAAGATAACAGGGTTGAACAAGAAGaaccagagagagacagacaagtCTGCGAAACACAGACCGAGACTGGTCATGGATACTCAGGGGAGCATCAACCAGTCAGCTTTAATGAGCTGTGTCTGAAACAGGATACAGAAACCATCTTCCATCCAGTTGGTTTCAGCCTGGAAGTCAGTGGTGGGAATGAGCATTATCAAGAGGAGCAGTTTTCTGAAGCTGTGTTTAACCCTATGCTCGTAGACACCAAGCCTGTTCTGAATCTTGAAGTTGTACATCCAATCGTTAATGACTCTAATGAAATGTCACTTCCTGGTACCTGTTACGGTAACAAATCAACTACGCCTTCACTCAGGTCAGCCTATAAGAACTGTGACAGACAAGTCCAGCACCACAAGCCAGAAGCGCCAGTGAAACATGCGTTAGAGTGTCCCACATGTGGTAGTAAGTTTAAGAGGTTTGACTACCTGCAGAGACACAGGTGCACTCCTGGACAGAGCCTGGGCTGTAAGCACTGTGATCTCCGCTTCCCTACACTCACCCAGCTGACCAACCACCTCCGCATCCACCGGAAAATGCTGCGCTGCCCTGTATGCAACAAAACCTTCCGCGACCGCTTCAATCTCCGCTGCCatcaacgcacacacacagGTGAGCGTCCTCACATCTGCACTGACTGCGGCTCATCGTTTGCTCAGGAACGAGGATTACTGGAGCACCGCAACATTCATACTGGAGAGAAACCTTTCCAGTGCCCTGTGTGCAGGAAAGGCTTCCGCCACAGCCGCACCCTCTCCAAACACGTGGTTCTCCATTCAGAAGCAAGGCCTTTTGGATGCTCAGACTGTGGCAGGACTTTTAAGATTAAAGATAACTTGTATCAGCATCAGAAGAAAATACACCACAGAAAATGCTTTTAATCACACCCTACACTTGAATTGCATGTGTGCTGCTTTTATATGTGCCATAAAAATGACGAGCGACAGAATGGCAGTGACATTTGTGGGCCGTTTCtgattttatcagtgatgtTTACAAGACAATTGacacttttaatgtttttaatgtttttaaattcagtgtacaGAGGTTAATATTGACGGTGAGGCTGTGTATTGATTTTTGCTAATGGTGGTGTAGTGTAGGTCTTAATAAAATCCATCACTGAAAACCTGTGCCACCACTTGAATTTAACTAGGCATATAGGTTAGAGCCTCCTATTGGATAATTACTGGAAAAGGTTACATAACCATCGCTAAAGAGTTTGGACTCAGATTGTGTACAAATGGAGGAAATTCATTAGCATTGTTATCCCAGGAGTGGTCTACCAACAAAGATCACGCCAAAAGCAAGGAGTTATATCAGAGAATGTCcatgaactgaatctcaagagaaggTGGATCAcacagcaagacaatgacccaaaccaCTCAAGCCTTTCTACAAAAGAATAGTTAAGGAAtggaatggccaagtcaaagtacTGACTTTAATCCAATGGTAATGTTGTGGAAGGACCTGAAAAGAGCAGTTAATGTGGAGAAACCCAAAAACATCCCACAGGAATGTTCTAAAATTCCTCCAAGCCTGAACAACAGTAACTAAACTGATAAACAGTGACCGGAAACGTTTAGTTGCAGTTATTGTGGCACAGAGGGGTCACAGCACCTTTTTCACTTACAGatatattggatcattttcctcaataaataaaccaCCAATTGTA

Function

NR:

description
PREDICTED: zinc finger protein 397-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228223.3 False 2574 mRNA 0.46 4 15563971 15571540
XM_007228225.3 False 1538 mRNA 0.50 4 15566382 15571540
XM_022672190.1 True 2620 mRNA 0.46 4 15563971 15571531

Neighbor

gene id symbol gene type direction distance location
ano3 ano3,LOC107677449 coding downstream 20191 15460687 ~ 15543780 (-)
fibin LOC108442682 coding downstream 129946 15431473 ~ 15434025 (-)
LOC103038669 kif21a coding downstream 273259 15228039 ~ 15290712 (-)
LOC103035545 LOC108428749,LOC105908727 coding downstream 489202 15001175 ~ 15074769 (-)
irx3 LOC103035229,LOC108428748 coding downstream 596670 14964498 ~ 14967301 (-)
gas2 gas2,LOC107677431,LOC107728426 coding upstream 9496 15581036 ~ 15621857 (-)
LOC111193057 NA coding upstream 50441 15621981 ~ 15624917 (-)
slc17a6 slc17a6,slc17a6a,LOC107555703,LOC107570095,LOC107677426 coding upstream 73539 15645079 ~ 15660833 (-)
LOC103041761 NA coding upstream 90462 15662002 ~ 15663287 (-)
ano5 ano5 coding upstream 94809 15666349 ~ 15710606 (-)
G73870 NA non-coding downstream 35509 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 109361 15449504 ~ 15454610 (-)
G73862 NA non-coding downstream 132664 15430147 ~ 15431307 (-)
LOC111193098 NA non-coding downstream 245884 15314637 ~ 15318087 (-)
G73760 NA non-coding downstream 374636 15188594 ~ 15189335 (-)
G73877 svip non-coding upstream 794 15572334 ~ 15577498 (-)
G73910 NA non-coding upstream 72281 15643821 ~ 15644252 (-)
LOC111193099 NA non-coding upstream 281762 15853302 ~ 15953813 (-)
G74091 usp3,LOC107659494 non-coding upstream 532076 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 630984 16202524 ~ 16215525 (-)
LOC103040324 NA other downstream 149358 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 349687 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 766688 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1018435 14542196 ~ 14545536 (-)
G73172 NA other downstream 2942615 12610834 ~ 12621356 (-)
LOC103046265 pkp3 other upstream 186763 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 895549 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2305486 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 2411207 17982747 ~ 18029747 (-)
G74791 NA other upstream 3367634 18939174 ~ 18940464 (-)

Expression


Co-expression Network