fancf


Basic Information

Item Value
gene id fancf
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15624828 ~ 15627708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228228.3
TTGTGCTGCAGGAGGCGGGAATCGGCTTGTTTACCTCCTCCTCGTGGTCTTGTCTCGTCTAGTTTACGGAAAAGGTCTtggttttgtcatttttaaagcatttttattagtCTTTTTCTGTGTGGGTTAAAGGTGTTTTAAGAAGGGAAAACGCGGCGTTTTTACCTGAGTTTAAGAGTGCTTGTGGGGGTGTTTTAGCCGCTTAGCCTGAGGTGGAGCGCAGCGCCGCATGGAGGCCGTGCTGAAGAACCTGGGCAGCACGCTGGAGGTCCTGGCCGTGTCTGAGACGGAGTTTGTGAGGGAGTGGGACGCTCGGACGGTGGACAGGGCGTTCCAGTGGGCGAAATACTGCGAACATGTCTACAATCGCTTCCACGCTAACCCCTCCATCCGGCCGGTGCTGGAGGACTGCCTGCGCCTGACTAATGAGCGGCTGTCTGAGGGTTTATCCGGACACCGCGCTCTGAGCCTGGCTGATTTGGCTCAGTGCCGCCACAGGTTATTTATCGGGCTGTTAAGAAACCCATTGGCTCCCcactctgtttttaaatcactttttgaCAACTGCAGACTGTTTGAGGATGATGGAGACACAAAACCAGGCAGAGAAACTCATCTGGACCTTTCTGGACTAATTATGTGCAGATCAGCCTGTAAACTGCTGGGCTCTTTTCAGTTGAACTCACAGGAAACTTCTGACATTAGCTTCAGTACCCAGGTTCAAGGTCTCATGCTTCTACAGCGCCTTCACGCCATACAGTGCCACCCAGGCAATGACAGCTACCTCAGGAAACTGATGGACACTTTCCTTCAGGACGTTGGACAAGATTTGGACCATTTATTTGAGGTCATTGCAGCTTGTCTACTAATAGAAAATGAGACCAGTGAGGAGCACACTGCAGCTCAGGACTTTCTCCTAGACTGGCTACAAGACCATCATCAAAATCATCATAGCTTGCTCCAAACAATGTGTCAGTCTTTGCCTCTTCAAATGTGCACCAAACTGTCccagaagcagaaaaaaatcaGGCTTATGTATTGGGAAGTATTAAAGCAATGGGCATCCTCCATGGAGTATGATGTGAGTGGTGGAGTATGGGTGCAGCAGTGTGACACCTTTCCCTCATTCAAAACATTAGTAAACCATTTGAAGTCCATATGGAGATCAGGTTCACCATTAAAAGAGGAGACTGAGAAAGAGCTGGTGGTGCTTAAACAAGTAGATGGGGACTTTGAGGTTCAAGGACTGAGTGTTTGGACAGACCTGCTCCTTCAGCTTagataaatgtgtttttcttttccagCTTTTACATTGTTAAAGCAGAAGGTTAAGTTCTGTGCTCTTTGTTTGTTCTTTAATTGACTGGTCTTTaatttacactttatgctatttattttcacattttgcctGACATTATCTTGCAATAATTGtcatttgtttaaaaagttcagttttAGCAATCTCCATACATTCCTCATTGTAATGGATTGTGGCTTCAGCAGACAGGGGGAGACAATGCTCCTTACACATTCTACTACATGCACATCCTATCAGATTACAAGCCTGCCACAATAGAAGTGTGGCAGACACACGTTTTTGTAATTCATGAAGTGTAATAAAAATTGTTAATTGttattaaacagattttttaaatactgttgaATACTCTTCTAGCTGTAATCCTGATCATTTGGCATAAAATTGGGGGCGCACTCTTGTTGTTTGACAGTATAGGTAAAAAGACCAAATGATTTTTACAGAATAATGATGTTGTAATGATgccatcaaataaaaaaacaaattaacatttaCTCTTTTCAATTTACACAATGgtgaaaaagtggcaaaattaatgaataataatttcagtgcatccctattcTAAACCAGTcaaattagatatttttttaaataaaatgaacatttgatCTTTTTAAGGATATGACTTAAGCTATGTCTTTTTTAAGTGAAAATGTTATATCTATCCATTACAAAGGAATTAAGTTGAGGGAAATGCAGAATTGAATTGGGAAGCAGGGGGGCATGACAGATGGTGGCATCACTCATCGCCTTGGCAACGGTTGGCATTAGGCCTCTGAGTCAATCTTAAAAGGGAAGGAAGGCCGAATGGTGAACATGCACGTCTCTCAAATTGGTCCCTCGAGTACAGGCTGTCGCGTGCTCCATCAGCTAGATTTCATCTGCTCCTTCGATTAGGGCAGGAGAGAAAGTGAGGCCTTGCACGAGGTTGTTCAGTATTTAATGATTAATGAGGTCGCTTGAGCCTGTCAGCACCCACCGTCCAATAACAACGTGGGGAACGTGAAATCTCACACACGGGAAGCACGTCTCAGCTTCAGTGAGGTTtcactgaattaaataaaaaaaattaagcatgaGAGTTTTTTCACTCTTGTCAGAGTTATTTACTCTCTGCTGATCTGTGGATTAGCTCAGCATGCAGTATTCTTGTGTAGCAGATTCAAGCAGTCAGTAAGCTAATTAGACTTTGTTAGAGAGAAACTCATAAAGATGAGTGGCAGTGATGCAAATAGAACTACTATCTAATACTGTTGGACACATGTTATATGTCAGATTAAAAGTCGCAGAGTTGGATTCAGTTTAATTACTGTCAAATGCTTTACATGTATACGGTTTagattagggatgcaccaaatatttgcatttttttctatttaaattgCATTCTTATGTGACTTAAGTAGCCCAGAAGAGGTACATTTGTGATTGGAATTGTATTActgaggtacagttatgactggaaaagcacagtttttttatgttaatgtattGTGCCTAGTTGGATTGTCTGTTAAGTGTTAAGTAGGTtaagtgttcaataaatatttttaaatcata

Function

NR:

description
PREDICTED: Fanconi anemia group F protein

GO: NA

KEGG:

id description
K10893 FANCF; fanconi anemia group F protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228228.3 True 2881 mRNA 0.41 1 15624828 15627708

Neighbor

gene id symbol gene type direction distance location
slc5a12 slc5a12 coding upstream 174958 15436399 ~ 15449870 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 206281 15403842 ~ 15418547 (+)
LOC103041261 clpx,LOC108442679 coding upstream 244284 15362768 ~ 15380544 (+)
LOC111193056 rsph3,LOC107580271 coding upstream 266934 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 273484 15308529 ~ 15351344 (+)
LOC103044315 ano9,LOC108442698 coding downstream 89357 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 111854 15739562 ~ 15755106 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 158245 15785953 ~ 15798451 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 182701 15810409 ~ 15814622 (+)
stoml1 stoml1 coding downstream 193685 15821393 ~ 15828549 (+)
G73819 NA non-coding upstream 166971 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 195183 15428748 ~ 15429645 (+)
G73801 NA non-coding upstream 239704 15384855 ~ 15385124 (+)
G73800 NA non-coding upstream 240591 15384023 ~ 15384237 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding upstream 241245 15382078 ~ 15383583 (+)
G73891 NA non-coding downstream 38640 15666348 ~ 15669769 (+)
G73941 pkp3,LOC107589311 non-coding downstream 136832 15764540 ~ 15765125 (+)
G73970 NA non-coding downstream 268011 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 365461 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 423001 16050709 ~ 16051543 (+)
svip svip other upstream 47295 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 703825 14891534 ~ 14921003 (+)
G73533 NA other upstream 975277 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2726897 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4997864 10272919 ~ 10626964 (+)
G74169 NA other downstream 658968 16286676 ~ 16288329 (+)
G74649 NA other downstream 2827143 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2842996 18470704 ~ 18479345 (+)
G74832 NA other downstream 3455108 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3512441 19140149 ~ 19322775 (+)

Expression


Co-expression Network