sigirr (sigirr)


Basic Information

Item Value
gene id sigirr
gene name sigirr
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15739562 ~ 15755106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228235.3
CGTGACTCTCCGTTTCAGGAGGAAAGAGCGTGAGGTGTTCTTCTGGCTTTCATCAGCTGGAGCTTCACTACTTCCACtattcaccatcatcatcatcaccctcatcatctactgtgtgtttattaggtTACACAGACTGAATCTCGAGTTTATGAAGGCTGCTGGTGTTGGAGTTGTGCGGATATGGGGCGGATTCAggtgcttctgctgctcttcgtgtgtgtgtggggtcagTTCACAGTGGTGATCAGAGCAGAGTCTCTTTGTGGCGTGGCTCCACAGTTTAAACCCAGCGCAGTTTGGACTGACATTTGGGAGCCACTGGGCTCCAGGGTTGAACTGAACTGCACAGCACTTATGGTTTACAATATGAGTGAATATAGCTGTGTGCCCGATCTGCAGTGGACGAAAGATGGACAACCTCTCACCAACCTTAGTGCCCTCACCCAGAACATGTCTTGGATAGCTGATGACTACCATCATGGTCTGAGCAGTATTCTGACTCTGAGCTTGAAGACACAGAACGACTTTGGTCTCTACCGCTGTAAAATATGGAACAGCACAGTCACCTTTAACATCCAGAGCACCACTTTCCCCAGTCACACAGGGGCAGTGGTGGCATCTGTGATCTTGCTTCTTTCATTAGCCCTGGCTGCCTTAATCTATTCCAAGTGCCACCTGAACTTCAGACTCTGGTATAAAAACAGATACGGAGACTATGAAATCGACGATGGCAAAATGTACGATGCCTACATCTCATACATAAACAGTGAGAATGACCGgaaatttgtaaattttatCCTGAAACCTCACCTGGAGAATAAGTATGGTCACAAATTACTGCTTAACGACACAGACATCCTCCCTGGAGCAGAGCCATCTGCAGAGATGCTAATGGACAGTAGTCGATGCCGGAGGCTCATTGTGGTTCTGTCACAGCCCTACCTGGAACAGGAATGGTGCACCACCAACTTCAAACAGGGCTTATTCCATCTGCTGGAGCTTTCTAGGAAGcccatcttcatcatcttccAGTCTCAGCAGAAGCATGTAAGTGTGGACAttatccagcagctccgagAGCACCAGGCACGCATCACCACTCTGATCTGGGGAGCACACTCTATGACCCCATCATCTGGGTTTTGGAAAGAGCTGGCTTTAGCTATGCCACGTAAGGTGGTTTTCCACACCAAGTCTTCTGGAGATCCTCAGACTTTGCTTCAAGATGATAAAGACCCTATGCTCACCCTACAGCCTGATTATCTGGACTGTAGACCAGACCCAGACCCTGCTGGAGACCTGGGATTGCGGTTGCCTATCTACAAATCTCTACCATCCAAAGCTCCAGTACTTCCTGCAGCCCCTGATCCAGCAACTGAAACCAAACCTCCAGAGATAGACGTGCCTGACTTGGGTTTGAGGAACTACGCTGCCAGAACCGATTTTTACTGCCTGGTCACAGAGGATGATATATAAGCCTCAGTCACACATTTCTATTTTCTTATTTCACTCCGTTTGCTCCAGGGATGAATGAAAGTTCTTAATCATTTCATGAGTCATTTTTCCTTTGTATTTTCTGTAAGGGTTCATGTGTTCAGAATACCAGCTTTTGGCCCAGCAGAGAAACATATACTTATTGTATCAAAATAATGCACCAGAATCTAATGTAGCTTATTGTTTGTAAATGTAATGATGTCATATATATACAATTGCGATATTAAAGTGAAAAGATATGTTTATTGGATGGAGGCTCTAGCAGCATTTTAGGCCTGGAGACAAGATGAGTTTGCAATCATAACTGCATGCCTTATTTTATGGCAATCCACGGTGcatcattattttttgtcaataagtataaattcattattaagttTATGATGGCTCAAGCTTAGCGTTATTTTTCAGATCACACCACATCCATATATTCCCCAATGATCAGAATTGTATTACTTTGTTATTTTGAATGTTTCTGAGAGTTCTGTATTTGAAGCCATTCTGCTTATTGACAGAATAATGTTAAAATGGAGGGCTACATTCTGCATGGCTCttgaatgtttttgtattttgaccAGTTGTAAACTGAGCAATATTTTAATAACTTCCTTGCCCTCAGTCTGCATATTCTTGCATCACATACAAATTATACAGTCTGAAAGCACAGAAGTGCACTATGTTTAATAACACCGCCCCTGCAgttactgatatatatatataatataaatgtacagtatatatttaaataaaacgtGTTTTCAAGTTA
>XM_007228236.3
GATTCAggtgcttctgctgctcttcgtgtgtgtgtggggtcagTTCACAGTGGTGATCAGAGCAGGCTTCTTTTCACTTTGAGTGGGAATGCATGAAATCACCAGGATCATATGAACTTCAGCAGAGTCTCTTTGTGGCGTGGCTCCACAGTTTAAACCCAGCGCAGTTTGGACTGACATTTGGGAGCCACTGGGCTCCAGGGTTGAACTGAACTGCACAGCACTTATGGTTTACAATATGAGTGAATATAGCTGTGTGCCCGATCTGCAGTGGACGAAAGATGGACAACCTCTCACCAACCTTAGTGCCCTCACCCAGAACATGTCTTGGATAGCTGATGACTACCATCATGGTCTGAGCAGTATTCTGACTCTGAGCTTGAAGACACAGAACGACTTTGGTCTCTACCGCTGTAAAATATGGAACAGCACAGTCACCTTTAACATCCAGAGCACCACTTTCCCCAGTCACACAGGGGCAGTGGTGGCATCTGTGATCTTGCTTCTTTCATTAGCCCTGGCTGCCTTAATCTATTCCAAGTGCCACCTGAACTTCAGACTCTGGTATAAAAACAGATACGGAGACTATGAAATCGACGATGGCAAAATGTACGATGCCTACATCTCATACATAAACAGTGAGAATGACCGgaaatttgtaaattttatCCTGAAACCTCACCTGGAGAATAAGTATGGTCACAAATTACTGCTTAACGACACAGACATCCTCCCTGGAGCAGAGCCATCTGCAGAGATGCTAATGGACAGTAGTCGATGCCGGAGGCTCATTGTGGTTCTGTCACAGCCCTACCTGGAACAGGAATGGTGCACCACCAACTTCAAACAGGGCTTATTCCATCTGCTGGAGCTTTCTAGGAAGcccatcttcatcatcttccAGTCTCAGCAGAAGCATGTAAGTGTGGACAttatccagcagctccgagAGCACCAGGCACGCATCACCACTCTGATCTGGGGAGCACACTCTATGACCCCATCATCTGGGTTTTGGAAAGAGCTGGCTTTAGCTATGCCACGTAAGGTGGTTTTCCACACCAAGTCTTCTGGAGATCCTCAGACTTTGCTTCAAGATGATAAAGACCCTATGCTCACCCTACAGCCTGATTATCTGGACTGTAGACCAGACCCAGACCCTGCTGGAGACCTGGGATTGCGGTTGCCTATCTACAAATCTCTACCATCCAAAGCTCCAGTACTTCCTGCAGCCCCTGATCCAGCAACTGAAACCAAACCTCCAGAGATAGACGTGCCTGACTTGGGTTTGAGGAACTACGCTGCCAGAACCGATTTTTACTGCCTGGTCACAGAGGATGATATATAAGCCTCAGTCACACATTTCTATTTTCTTATTTCACTCCGTTTGCTCCAGGGATGAATGAAAGTTCTTAATCATTTCATGAGTCATTTTTCCTTTGTATTTTCTGTAAGGGTTCATGTGTTCAGAATACCAGCTTTTGGCCCAGCAGAGAAACATATACTTATTGTATCAAAATAATGCACCAGAATCTAATGTAGCTTATTGTTTGTAAATGTAATGATGTCATATATATACAATTGCGATATTAAAGTGAAAAGATATGTTTATTGGATGGAGGCTCTAGCAGCATTTTAGGCCTGGAGACAAGATGAGTTTGCAATCATAACTGCATGCCTTATTTTATGGCAATCCACGGTGcatcattattttttgtcaataagtataaattcattattaagttTATGATGGCTCAAGCTTAGCGTTATTTTTCAGATCACACCACATCCATATATTCCCCAATGATCAGAATTGTATTACTTTGTTATTTTGAATGTTTCTGAGAGTTCTGTATTTGAAGCCATTCTGCTTATTGACAGAATAATGTTAAAATGGAGGGCTACATTCTGCATGGCTCttgaatgtttttgtattttgaccAGTTGTAAACTGAGCAATATTTTAATAACTTCCTTGCCCTCAGTCTGCATATTCTTGCATCACATACAAATTATACAGTCTGAAAGCACAGAAGTGCACTATGTTTAATAACACCGCCCCTGCAgttactgatatatatatataatataaatgtacagtatatatttaaataaaacgtGTTTTCAAGTTA
>XM_022672193.1
CGTGCGTCACGTGACTCTCCGTTTCAGGAGGAAAGAGCGTGAGGTGTTCTTCTGGCTTTCATCAGCTGGAGCTTCACTATTTCCACtattcaccatcatcatcatcatcatcatcaccctcatcatctactgtgtgtttattaggtTACACAGACTGAATCTCGAGTTTATGAAGGCTGCTGGTGTTGGAGTTGTGCGGATATGGGGCGGATTCAggtgcttctgctgctcttcgtgtgtgtgtgggtcagtTCACAGTGGTGATCAGAGCAGAGTCTCTTTGTGGCGTGGCTCCACAGTTTAAACCCAGCGCAGTTTGGACTGACATTTGGGAGCCACTGGGCTCCAGGGTTGAACTGAACTGCACAGCACTTATGGTTTACAATATGAGTGAATATAGCTGTGTGCCCGATCTGCAGTGGACGAAAGATGGACAACCTCTCACCAACCTTAGTGCCCTCACCCAGAACATGTCTTGGATAGCTGATGACTACCATCATGGTCTGAGCAGTATTCTGACTCTGAGCTTGAAGACACAGAACGACTTTGGTCTCTACCGCTGTAAAATATGGAACAGCACAGTCACCTTTAACATCCAGAGCACCACTTTCCCCAGTCACACAGGGGCAGTGGTGGCATCTGTGATCTTGCTTCTTTCATTAGCCCTGGCTGCCTTAATCTATTCCAAGTGCCACCTGAACTTCAGACTCTGGTATAAAAACAGATACGGAGACTATGAAATCGACGATGGCAAAATGTACGATGCCTACATCTCATACATAAACAGTGAGAATGACCGgaaatttgtaaattttatCCTGAAACCTCACCTGGAGAATAAGTATGGTCACAAATTACTGCTTAACGACACAGACATCCTCCCTGGAGCAGAGCCATCTGCAGAGATGCTAATGGACAGTAGTCGATGCCGGAGGCTCATTGTGGTTCTGTCACAGCCCTACCTGGAACAGGAATGGTGCACCACCAACTTCAAACAGGGCTTATTCCATCTGCTGGAGCTTTCTAGGAAGcccatcttcatcatcttccAGTCTCAGCAGAAGCATGTAAGTGTGGACAttatccagcagctccgagAGCACCAGGCACGCATCACCACTCTGATCTGGGGAGCACACTCTATGACCCCATCATCTGGGTTTTGGAAAGAGCTGGCTTTAGCTATGCCACGTAAGGTGGTTTTCCACACCAAGTCTTCTGGAGATCCTCAGACTTTGCTTCAAGATGATAAAGACCCTATGCTCACCCTACAGCCTGATTATCTGGACTGTAGACCAGACCCAGACCCTGCTGGAGACCTGGGATTGCGGTTGCCTATCTACAAATCTCTACCATCCAAAGCTCCAGTACTTCCTGCAGCCCCTGATCCAGCAACTGAAACCAAACCTCCAGAGATAGACGTGCCTGACTTGGGTTTGAGGAACTACGCTGCCAGAACCGATTTTTACTGCCTGGTCACAGAGGATGATATATAAGCCTCAGTCACACATTTCTATTTTCTTATTTCACTCCGTTTGCTCCAGGGATGAATGAAAGTTCTTAATCATTTCATGAGTCATTTTTCCTTTGTATTTTCTGTAAGGGTTCATGTGTTCAGAATACCAGCTTTTGGCCCAGCAGAGAAACATATACTTATTGTATCAAAATAATGCACCAGAATCTAATGTAGCTTATTGTTTGTAAATGTAATGATGTCATATATATACAATTGCGATATTAAAGTGAAAAGATATGTTTATTGGATGGAGGCTCTAGCAGCATTTTAGGCCTGGAGACAAGATGAGTTTGCAATCATAACTGCATGCCTTATTTTATGGCAATCCACGGTGcatcattattttttgtcaataagtataaattcattattaagttTATGATGGCTCAAGCTTAGCGTTATTTTTCAGATCACACCACATCCATATATTCCCCAATGATCAGAATTGTATTACTTTGTTATTTTGAATGTTTCTGAGAGTTCTGTATTTGAAGCCATTCTGCTTATTGACAGAATAATGTTAAAATGGAGGGCTACATTCTGCATGGCTCttgaatgtttttgtattttgaccAGTTGTAAACTGAGCAATATTTTAATAACTTCCTTGCCCTCAGTCTGCATATTCTTGCATCACATACAAATTATACAGTCTGAAAGCACAGAAGTGCACTATGTTTAATAACACCGCCCCTGCAgttactgatatatatatataatataaatgtacagtatatatttaaataaaacgtGTTTTCAAGTTA

Function

symbol description
sigirr Acts upstream of or within negative regulation of inflammatory response. Located in cell surface. Is expressed in brain; gill; integument; liver; and pleuroperitoneal region. Orthologous to human SIGIRR (single Ig and TIR domain containing).

NR:

description
single Ig IL-1-related receptor

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K05169 SIGIRR; single Ig IL-1R-related molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228235.3 False 2263 mRNA 0.43 9 15740454 15755106
XM_007228236.3 False 2132 mRNA 0.43 10 15740645 15755106
XM_022672193.1 True 2280 mRNA 0.43 9 15739562 15755106

Neighbor

gene id symbol gene type direction distance location
LOC103044315 ano9,LOC108442698 coding upstream 1500 15717065 ~ 15738062 (+)
fancf NA coding upstream 111854 15624828 ~ 15627708 (+)
slc5a12 slc5a12 coding upstream 289692 15436399 ~ 15449870 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 321015 15403842 ~ 15418547 (+)
LOC103041261 clpx,LOC108442679 coding upstream 359018 15362768 ~ 15380544 (+)
LOC103046771 LOC103046771,LOC108442701 coding downstream 30847 15785953 ~ 15798451 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 55303 15810409 ~ 15814622 (+)
stoml1 stoml1 coding downstream 66287 15821393 ~ 15828549 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding downstream 76351 15831457 ~ 15839847 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding downstream 196831 15951937 ~ 15979103 (+)
G73891 NA non-coding upstream 69793 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 110384 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 281705 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 309917 15428748 ~ 15429645 (+)
G73801 NA non-coding upstream 354438 15384855 ~ 15385124 (+)
G73941 pkp3,LOC107589311 non-coding downstream 9434 15764540 ~ 15765125 (+)
G73970 NA non-coding downstream 140613 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 238063 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 295603 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 379378 16134484 ~ 16147862 (+)
svip svip other upstream 162029 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 818559 14891534 ~ 14921003 (+)
G73533 NA other upstream 1090011 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2841631 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5112598 10272919 ~ 10626964 (+)
G74169 NA other downstream 531570 16286676 ~ 16288329 (+)
G74649 NA other downstream 2699745 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2715598 18470704 ~ 18479345 (+)
G74832 NA other downstream 3327710 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3385043 19140149 ~ 19322775 (+)

Expression


Co-expression Network