LOC103046771 (LOC103046771,LOC108442701)


Basic Information

Item Value
gene id LOC103046771
gene name LOC103046771,LOC108442701
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15785953 ~ 15798451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228239.3
CGAGAGCGAATGAATGGAGCTGCTGCGGGTCAGCTGACTGCTTTTCACCGCTGGGTCACATGACCTGTTTTCCGCTCTTCAGCATTTTCACTTTCCCCTAAACCTTACAGTCACAGTGTTCTCTCAGAGCGCTGAGCTGTGGGGGTTTGTAGGGAGTTTATAGGGGGTTTGTAACGCGGTTATTCTATATTAAAGCTGTATCATGTTTCAGACTGAGAGGAGGTTTCTCCGGCTGCTGTTCCTGCTCTGTATTCTCCACTATGAAGCAGGACAAGTGTTTGGAGTGTGGCCAATGCCCCAGCAGATCACCCAGTCTACAGACAGGTACCTCCTGAGTCCTCAGAGCTTCTCCTTCAGCTACTCCAAAGACTCAGCTGCTCAGAGCGGCTGCTCCGTCCTGGACTCTGCCTTCAAAAGATACTACAGCCTGATCTTCCCAGACGCTGCTGATGGAGCACGATTCAGCAACATTTGGATGGATCCAACGCCCTTTACAGTGTCAGTCAGTGtcaaaagcggagagtgtgatGGATATCCCGATGAAGGGTCAGATGAAAGCTATAACCTGAGCGTGGCTGCAGGTGCAGCTGCATTGAAGGCACAGTCAGTATGGGGAGCACTGAGAGgtctGGAGTCCTTCAGTCAACTGGTATACCAGGATAAATACAACATGTATTTTGTTAATAAGACTGAAATTCAGGACTTCCCACGCTTCGAGTTTAGAGGGCTTTTGCTGGACACTTCAAGGCATTATTTACCTCTGAACGCCATTCTGAAAACTCTGGATGCCATGGCCTATAGTAAATTCAATGTGTTTCACTGGCACATTGTGGATGACCCTTCATTCCCATACCAGAGCTACAGTTATCCGGACCTTAGCAGCAAGGGAGCTTTTCACCCGATGACCCATATTTACACACAGTCAGATGTAAAGAGGGTAATTTCTCATGCCAGAATGAGAGGAATCAGGGTGATACCAGAGTTCGACACTccaggacacacccagtcatgGGGTAAAGGGCAGCCAAACCTGCTAACTCCCTGCTATAAAGGAGACGTTCCGTCTGGAACATTTGGTCCCGTCAATCCAATTTTGGATTCGACCTACCAGTTCATGAGTGGCCTTTTTAAAGAGATGAAATCAGTCTTTCCCGATTCCTATGTGCATTTGGGTGGAGATGAGGTTAATTTTGCTTGCTGGAAGTCCAATCCTAACGTGCGGGCGTTCATGACAAAGATGGGCTTTGGACATGATTACACCAAACTGGAATCATACTACATAGAAAAcATTGTAAACATCAGTTCTGCACTCAACAAGACCCCCATTGTTTGGCAGGACGTGTTTGACTACCGTGAAAGGATCCCTAAGGACACAGTGCTGGAGATCTGGAAAGGAGTTCCTGCAGATTACCGAACTGAGCTGGCCAAAATCACTCACGCTGGGTACAGGGTACTGCTTTCGGCCCCTTGGTACATCAACCATATCAGCTACGGGCAGGACTGGCGCAATTCCTACACTGTGCAGCCCCAGAACTTCTCCGGCACAGACCAGCAGAAGGCGCTGGTGATTGGTGGTGAGGTCTGCATGTGGGGAGAGTATGTGGATGCAACCAATCTCCATCCACGCCTATGGCCCAGAGCATGTGCCGCTGCAGAAAGGCTGTGGAGTAATGAGGAGATGACCTCTAATGTGGATCAGGCTTTCCCTCGCCTAGAGAAATTTCGCTGTTCTCTGATCAGGCGTGGTATCCAAGCAGAACCTCTGTTTGTAGGCTACTGCAAAGATGAGTATAGGGGTGTGTAAAGTATAGGAATGGACTGAGGCAGGAGTgaaattttatgttgcacttgGATTGCacttgatttttaaatattttgttaataatattaaatcagAGTTGAAATGATCTAAAATGCTAAGTTAAGAAAGCAGCGTTTCTTACATTTAAGtacaattttatttcatttcagacAGTAAAAACCCAAAATATTTTATCTGTTCATCTTCagtttcatttgttaatatgcACACACTTCAGGAATTTAAGCCTGAAACACATTTCAAATAAGTTGCaacagtaaagcatttaccactaTCCTGCAAACATGTCTTGAGGTGTGTAATAGTATGAGCTtgtcatttttcatttaaaatttctCTACACATTCTTTATTGGAGACAGGTCAGAACTGTAACCAGGACTTTCTAGTACACCTACCTCTTCTTTCCCAGCCAATGCATTGTTATTGCGTGCAACATGTGGTTTTGcactgtcttgttgaaaaacTAATTGATGGAATAAAATGGTGTCTTAATTAATGCTGCATTATAAAAGTAACCTGACAAAATCCCATACCAAGACAAACCCCAGCTTTTGGACTTATCtatgctgcattttttttaaatatgcctTTATTGACAAGCTTTGTTCCCTAAAGATATTAACCTTTGTGCTTATGGTACTTTTTGTACCTGTTGACATCGCCTATTTAAATTCATATCTAAATGTAGTATCTCATAAGTAGCTTTAAATCTCCCTATTCCTATcctttttggaatgtgttgcaggaaTGAATGTAtagtaacaaatgaaatgaagctAGCCAGAAGAAACACGAAATATTGTGGTTTCAAACAGTTTGCAATGAAATAAGCCTGAATGTTAGAATAGTGTTTTCCTCAATGGGCTGTataatgttttttgtattttctataaTGATGTACATGatttctaaaataattaaactgtgaCTTTCAACTTTTAA
>XM_007228241.3
TACAGCGGGAGCATCATTTACTGTGAGAATAATAAAACCCGAGAGCGAATGAATGGAGCTGCTGCGGGTCAGCTGACTGCTTTTCACCGCTGGGTCACATGACCTGTTTTCCGCTCTTCAGCATTTTCACTTTCCCCTAAACCTTACAGTCACAGTGTTCTCTCAGAGCGCTGAGCTGTGGGGGTTTGTAGGGAGTTTATAGGGGGTTTGTAACGCGGTTATTCTATATTAAAGCTGTATCATGTTTCAGACTGAGAGGAGGTTTCTCCGGCTGCTGTTCCTGCTCTGTATTCTCCACTATGAAGCAGGACAAGTGTTTGGAGTGTGGCCAATGCCCCAGCAGATCACCCAGTCTACAGACAGGTACCTCCTGAGTCCTCAGAGCTTCTCCTTCAGCTACTCCAAAGACTCAGCTGCTCAGAGCGGCTGCTCCGTCCTGGACTCTGCCTTCAAAAGATACTACAGCCTGATCTTCCCAGACGCTGCTGATGGAGCACGATTCAGCAACATTTGGATGGATCCAACGCCCTTTACAGTGTCAGTCAGTGtcaaaagcggagagtgtgatGGATATCCCGATGAAGGGTCAGATGAAAGCTATAACCTGAGCGTGGCTGCAGGTGCAGCTGCATTGAAGGCACAGTCAGTATGGGGAGCACTGAGAGgtctGGAGTCCTTCAGTCAACTGGTATACCAGGATAAATACAACATGTATTTTGTTAATAAGACTGAAATTCAGGACTTCCCACGCTTCGAGTTTAGAGGGCTTTTGCTGGACACTTCAAGGCATTATTTACCTCTGAACGCCATTCTGAAAACTCTGGATGCCATGGCCTATAGTAAATTCAATGTGTTTCACTGGCACATTGTGGATGACCCTTCATTCCCATACCAGAGCTACAGTTATCCGGACCTTAGCAGCAAGGGAGCTTTTCACCCGATGACCCATATTTACACACAGTCAGATGTAAAGAGGGTAATTTCTCATGCCAGAATGAGAGGAATCAGGGTGATACCAGAGTTCGACACTccaggacacacccagtcatgGGGTAAAGGGCAGCCAAACCTGCTAACTCCCTGCTATAAAGGAGACGTTCCGTCTGGAACATTTGGTCCCGTCAATCCAATTTTGGATTCGACCTACCAGTTCATGAGTGGCCTTTTTAAAGAGATGAAATCAGTCTTTCCCGATTCCTATGTGCATTTGGGTGGAGATGAGGTTAATTTTGCTTGCTGGAAGTCCAATCCTAACGTGCGGGCGTTCATGACAAAGATGGGCTTTGGACATGATTACACCAAACTGGAATCATACTACATAGAAAAcATTGTAAACATCAGTTCTGCACTCAACAAGACCCCCATTGTTTGGCAGGACGTGTTTGACTACCGTGAAAGGCACAGGCCTCAGTATGTGGTGGAGGTGTGGAAAGGGGGCTGTTACCTGTGTGAAGTGCGCAGGGTGACTAAAGCAGGGCTGAAAGTCATTCTGGCAGCACCCTTCTACCTGGACTTGCCTGGACCTACACACAACTGGGCCCGGTACTACAACGTGCGGCCTCTCGCCTTTAAGGATCCCTAAGGACACAGTGCTGGAGATCTGGAAAGGAGTTCCTGCAGATTACCGAACTGAGCTGGCCAAAATCACTCACGCTGGGTACAGGGTACTGCTTTCGGCCCCTTGGTACATCAACCATATCAGCTACGGGCAGGACTGGCGCAATTCCTACACTGTGCAGCCCCAGAACTTC

Function

NR:

description
beta-hexosaminidase subunit alpha-like isoform X1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function

KEGG:

id description
K12373 HEXA_B; hexosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228239.3 True 2766 mRNA 0.43 14 15785992 15798451
XM_007228241.3 False 1751 mRNA 0.49 12 15785953 15795750

Neighbor

gene id symbol gene type direction distance location
sigirr sigirr coding upstream 30847 15739562 ~ 15755106 (+)
LOC103044315 ano9,LOC108442698 coding upstream 47891 15717065 ~ 15738062 (+)
fancf NA coding upstream 158245 15624828 ~ 15627708 (+)
slc5a12 slc5a12 coding upstream 336083 15436399 ~ 15449870 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding upstream 367406 15403842 ~ 15418547 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding downstream 11958 15810409 ~ 15814622 (+)
stoml1 stoml1 coding downstream 22942 15821393 ~ 15828549 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding downstream 33006 15831457 ~ 15839847 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding downstream 153486 15951937 ~ 15979103 (+)
LOC103023069 commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913 coding downstream 229011 16027462 ~ 16031438 (+)
G73941 pkp3,LOC107589311 non-coding upstream 20828 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 116184 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 156775 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 328096 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 356308 15428748 ~ 15429645 (+)
G73970 NA non-coding downstream 97268 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 194718 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 252258 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 336033 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 487807 16286258 ~ 16291939 (+)
svip svip other upstream 208420 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 864950 14891534 ~ 14921003 (+)
G73533 NA other upstream 1136402 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2888022 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5158989 10272919 ~ 10626964 (+)
G74169 NA other downstream 488225 16286676 ~ 16288329 (+)
G74649 NA other downstream 2656400 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2672253 18470704 ~ 18479345 (+)
G74832 NA other downstream 3284365 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3341698 19140149 ~ 19322775 (+)

Expression


Co-expression Network