stoml1 (stoml1)


Basic Information

Item Value
gene id stoml1
gene name stoml1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15821393 ~ 15828549 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228243.3
GTTGGAGCTGTGGGATCTCCGTTATAGAACACGGAAGAgagtgtttgtttgtgtctgAGATGGAAGTGGATTAGCGGTATTGGTTTTATATGAGTTTATTAACACTGATGTAAACAGCTGTTAGTGAGAATGTTCAGGAAATCTCCAGGTTTCCACTATGAAGCTGTTCCTGCGGGTGATCCGGGCAGCACTCCTGGCTTGTACTCGTCCCCGATAACATACGGACAGTCTCAGTTCAGCAGCGGACACTCCTTCGACTACGTGCCCAGAATTAAAGACAACGACTTCACTGATAAAACCCAGGGATTACTGTCGTGGATTTGCAATCTGATCGTCATATTCTTGGTTTTTGTTTGCACACTCATTACATTCCCCATCTCTGCGTGGTTCGCATTAAAAACAGTTCCCAACTATCAGAGGATCGTTATTTTCCGACTGGGGCGCATTAGACCTCCTAAGGGTCCAGGAGTGGTGCTGGTGCTTCCATTGATTGATCAGTGGCAGAGAGTGGACCTCAGAACCAGGGCCTTCAACATCCCACCATGCAAGGTGACCACTAAAGATGGTGGGCTGGTGTCCATAGGAGCTGACATCCAGTTCCGAATCTGGAATCCAGTGATGTCCGTGGTGGCTGTGCAGGACCTGAATGCGTCCACACGCCTCACAGCACAGAACGCCATGACCCAGAGTCTGGGCAAAAAGACTGTGAGGGAGATTCAGACAGAGAGAGTCAAACTAGGCGAACATCTTGGGATGGACATAAATGAGCTGACAAAGCCATGGGGATTGGAGGTAGATAGAGTGGAGCTGACCCTGGAGAGTGTGCTCCAGGCTCCAGAGGAGCCTAACTCAGGGTCCTTCATCATGCCCCCCTCTGTCCCTGGCCTGGAAGGCCTTGCAGGACCAATCCAACAGCTTGCCATGCATTTTCTCGGGCAAAATACACCAGGCCCCCAACCTGTTAAAGaTATGGTGAACTTCACTGATGAGATGAACACGGGGGCTCCAGTATCCACAGGGAGCAGCAAGGCAGAGGAGCTGCTGGCGGCAGTCAGTCTGGTGCTGTCTGAAGATTTGGTCAGGCAGGTAGGAGCCTGCTTTCAGTTCCACATCAGCAACAGTAGTGGCCAGACCAGCAGCTACTACTATGTGGATCTTACTCAAAATGGTGGAGCATGTGGTGTGGGTGAAGCAAGACAGCCTGACGTCTCTCTAAGCATGAGTGAGCAGGACTTGATGGCCTTGTTCCAGGGCAGCCTGCAGCCGTTTTCTGCGTACAGCAGTGGCCGACTGAGAGTACAGGGAGACCTGAACACTGCCATGAAGCTAGAGACACTCATTAAACTCCTCAAGCCTCTGTGAGGCATGCTTTAAATACGTGTGCCTTAAATTTGCTGCTTTTCCACCTTATTTCAAAAG

Function

symbol description
stoml1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human STOML1 (stomatin like 1).

NR:

description
stomatin-like protein 1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0032934 sterol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228243.3 True 1419 mRNA 0.51 6 15821393 15828549

Neighbor

gene id symbol gene type direction distance location
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding upstream 6771 15810409 ~ 15814622 (+)
LOC103046771 LOC103046771,LOC108442701 coding upstream 22942 15785953 ~ 15798451 (+)
sigirr sigirr coding upstream 66287 15739562 ~ 15755106 (+)
LOC103044315 ano9,LOC108442698 coding upstream 83331 15717065 ~ 15738062 (+)
fancf NA coding upstream 193685 15624828 ~ 15627708 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding downstream 2908 15831457 ~ 15839847 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding downstream 123388 15951937 ~ 15979103 (+)
LOC103023069 commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913 coding downstream 198913 16027462 ~ 16031438 (+)
neil1 NA coding downstream 203825 16032374 ~ 16040050 (+)
LOC103024759 NA coding downstream 260316 16088865 ~ 16093616 (+)
G73941 pkp3,LOC107589311 non-coding upstream 56268 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 151624 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 192215 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 363536 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 391748 15428748 ~ 15429645 (+)
G73970 NA non-coding downstream 67170 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 164620 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 222160 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 305935 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 457709 16286258 ~ 16291939 (+)
svip svip other upstream 243860 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 900390 14891534 ~ 14921003 (+)
G73533 NA other upstream 1171842 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2923462 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5194429 10272919 ~ 10626964 (+)
G74169 NA other downstream 458127 16286676 ~ 16288329 (+)
G74649 NA other downstream 2626302 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2642155 18470704 ~ 18479345 (+)
G74832 NA other downstream 3254267 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3311600 19140149 ~ 19322775 (+)

Expression


Co-expression Network