ccdc33 (ccdc33)


Basic Information

Item Value
gene id ccdc33
gene name ccdc33
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15839686 ~ 15856661 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228244.3
GGCTTCAGCCTCTGTACTGCCATTCTCTTTagctctgtctgtctttctcactGTGATATTAAATTAGTTTCCGtcataaagttcagaatctCTAAGGCCAATGCAAACCTCTGAGGAACCACCGGTGCTCTCCACCACCACTAGACAGctccagaGGGATGGTTATGATCTGCCAGCCTATGATGCTCTTGCCCAGATCCTCCCGGAATACCAGCACCTACTCAAAATACCAAAAGCTCCTCGACAGAGCAAAGGCGAACCAGGAGAACAGAAAAAGAGCCAGAGGTCGTCAGAGCTCAATCAAACATTTGAAGTCGTCTCCTCAGCTAGAGGGCTCCCAGTGGCAGATCAGTCTGATGACCCACATGTTGCTGAAATTAATGAACACCAAACTAAAGAGCTGGAGAACTACCGCACTGCGATGTGTAAGATGGCTGAAGACATCCTCGCTCTGCGCTCTCAGGTGACCAGCCTAGAGGCGGAGAATAGTCAGCTACGCAGTGAGCTGTCCCAGCACCAGGACCTTGGTTGGACCCTATTGGATGACACTGACATTGACATCATGACCAAGACTGAGATCACAGACAGAATTgTTTCTCTAAAGGCTAAATTGGCCAGTGAGAGCAGTAAAACAGCGGAACAGAGGGAAAAGATCCAGCGTCTTCAGAACGAGCTCATCAGGAAGAATGACAGTGAGAAGGAGTTGGTGTTGTTAAAGCAGGCCCATCAACAGCAGCAGGCTGTGCTTCAGCGCTATCAGGGACGCATCAAGAAATGTGCAGTGCTGGAGAATACAGTACGCCAACAGGAGAAGATTATTGAACAGATGGAGAAGTTGCTGGATACAAAGCTAAGagaaaggaataaagagaacacagagaggaaGAAGGCAGTCTATAAACGGAAAGaggaGGATGCAAGCAAGAGGAGAGAGATTGAGTCTGTGCTGTCGGCAGAGAATTCCCGCCTCAGAGAGGAACTGGAAAGGCTGCGCCATCAGCCACCAGCTGTTATTATACAACAACCTGTCCAGACAGAGCAGCCTTTTTCAGACAGTGAGAAGCTGAGACTGTTGGGGCAGCTAGAGAGAGCAGAGGCCTACATCCACACACTGGAAAAACAGCTGGAGGAGAACGCCAGACTGTGGGGGAGAGAAAAGCAAGAGATGCTGATCAGGCTCAGTGAATATGAGCATGGATTCACACTTACTTCTACAATGGGTCTGCATGATCTGCCACAGaaaaacattgcaGACACTGTTCTAAAAAAATGCCCAGCACAGACAACTGGATCCCAAAAAGTGATGAAACCTTCATGCTTTTTAATACAGTGAAATGAAAcacacacctgttttttttttttcagatacatTTACAGTGTATCATAGATGAACTGTAGTAATTTAACAAATTATATATGGCTTAGTAAAACacagatacaataaaacattacatcAGTACCTCCTG

Function

symbol description
ccdc33 Predicted to be active in peroxisome. Orthologous to human CCDC33 (coiled-coil domain containing 33).

NR:

description
PREDICTED: coiled-coil domain-containing protein 33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228244.3 True 1466 mRNA 0.46 11 15839686 15856661

Neighbor

gene id symbol gene type direction distance location
ano5 ano5 coding downstream 129080 15666349 ~ 15710606 (-)
LOC103041761 NA coding downstream 176399 15662002 ~ 15663287 (-)
slc17a6 slc17a6,slc17a6a,LOC107555703,LOC107570095,LOC107677426 coding downstream 178853 15645079 ~ 15660833 (-)
LOC111193057 NA coding downstream 214769 15621981 ~ 15624917 (-)
gas2 gas2,LOC107677431,LOC107728426 coding downstream 217829 15581036 ~ 15621857 (-)
islr2 islr2,LOC107662462 coding upstream 123320 15979981 ~ 15984118 (-)
sema7a NA coding upstream 157704 16014365 ~ 16026901 (-)
man2c1 man2c1,LOC107682572 coding upstream 183404 16040065 ~ 16051577 (-)
ca12 ca12 coding upstream 198395 16055056 ~ 16085634 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 400677 16257338 ~ 16313325 (-)
G73910 NA non-coding downstream 195434 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 262188 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 311224 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 385076 15449504 ~ 15454610 (-)
G73862 NA non-coding downstream 408379 15430147 ~ 15431307 (-)
G74091 usp3,LOC107659494 non-coding upstream 246955 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 345863 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 362435 16219096 ~ 16222273 (-)
G74203 NA non-coding upstream 395831 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 429567 16286228 ~ 16292019 (-)
LOC103046265 pkp3 other downstream 59008 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 425073 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 625402 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1042403 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1294150 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 610428 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2020365 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 2126086 17982747 ~ 18029747 (-)
G74791 NA other upstream 3082513 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 3136007 18992668 ~ 19008366 (-)

Expression


Co-expression Network