stra6 (stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458)


Basic Information

Item Value
gene id stra6
gene name stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15951937 ~ 15979103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228246.3
GTGACTATATAAAGTGATAAGGAACAAAACACCATACTTCAAGACACACGCTGCAAAATATATCTTGCTGATATCAATATGTTCATAAGTTCATAACCAAGATCTAGAAGACAGGGTCAAAGTCTGGCAAGACCGCATGGAGCGTTcacctctttttaaaatgtacaatagTTGTAAGCTAGTATGCTTTGTATAAAGAAATGCTTGACAAGCTTGTGATGGTCAGAATATTTGGACTGTAGTATTTTGCATATTAAAAGAGGTTCAAGAAGATAACACTTCAGGATCAACTGGAAGCAAGGCTTCCACTGGTGTGGTAATCCTCGTCTGAAAAAGGCCCAGGAGTTTCGGGGTGGCACGCCGCGGCCAGAAGCTGCCACATTACTCATAAGACTCTGCTACAGCACCtggacacagagacagaaaagagGACAGCACACTCAGTGCTGCCAGCAGTGCTGCCACTGAAAGTTTGGGACGTGTTTTTAGGGTTTTCCCCCACATACAGTGCAACTGAGAagagcattgtgtgtgtgtgtcctactGGAGGGAAGAGAGCATCAAACCTCTGTGTCTGGCTCATTGGATCCCTTTGATATACTGATACATCTGTTTGATCCTTGAGCCAGCACAATGAGTGCAGAAACTGGAAAGGACTACTACGACTACTCGGACTGGTATGAAAATGCACTACCTACCAAGCCTCCAATTGAAGTTATCCCACCATGTGACCCCACAGCTGATGATGGCCTCTACCACATATGCATTGCAGCCATATCTTTGGTGGTTATGCTGATCCTGGCGGTTCTGGCAAGACGACAGAAAGTTGGTGATAGTCTGAAAGGAGTTCCTGGTTTATTAAGCCCAGTAAATTTCCTGGACCATACGCAGCACAAAGGCCTGTCAGTGGCAGTGTTTGGGGTGCTTTTCTGCAAAATCATTGGACTGGTCCTAGCCTCCAACCCACTACCCTTTACCAAGGACACACAATACAAAGAATACTGGCTGATCCTGGCTCTGTTCTACTACCCTGCTTTGTACTATCCTTTGCTAGCCTGTGGCACACTCCACAATAAGGTGGGCTATGTGCTAGGCAGCCTGCTGTCATGGACACATTTTGGAGTCCTCGTCTGGCAGAAAGTGGACTGTCCCAAAACACCACAGATATATAAGTACTATGCCCTGTTCAGCAGCCTGCCCCAGATTGCCTGCTTGGCCTTTCTCAGTTTCCAGTATCCTCTACTCCTGTTCAAGGGCTTAAAGGGTACAGAGAAAACTAACGCGTCAGAGGACCTTAAGAGCAGCTACTACAGAGACTACGTAAAGAAGATCCTTAAAAAGAAGAAGCCATCACAAGCCAGTTCTAGGCCAAAGCTGTCTGAGCGAATCTCTGATGCTTTCAAGTCTTACATTTACACACCTGAAGAAGTTTTTAGGTTTCCTCTGAAATTAGCCATCTCTCTGGTTGTGGCGTTTATTGCACTTTATCAGATGGCACTCTTGCTGGTCACTGGAATAGTGCCCACTCTCCAGATTGTCCGGAGAGGAGTGGATGAAGACATTGCGTTTCTCCTGGCTGGATTCAACATTCATCTGTCGGATGACCGCAAAGAGGTGGTCAAAATAGTGGTGCACTACATGTGGTGTGTTGAGGTGTGCTACGCCTCGGCTGTCACCCTGTCCTGCTTGGTCAATCTGACCATGTTTATGAGGTCCATGGTCCTGCACAGGTCCAATCTTCGGGGGCTGTACAGAGGAGACATCTACAATGTGTATAACTGCCAGAGGAATATAAGGCCTTCACGTCCTGCACTGGTCTGCTGGATGGGCTTCACCAGTTACCAAGCTGCATTTATTTGTctagGCATGATTATTCAGACTCTAGTGTTCTTCATCTGCCTGCTATTCGGTGTATTCCTTGTCATCATTCCCATCTTTTATGGAAAGAACATGTTGCTGTTCCATGTCATCGGCAGGATGTGGCCCTTCTGGTTGATGTTGTTCTTGGTTGGGCTTATCCAGCACCTTACATCCAGGTTCTTGTTCATCAAGAAGGAAGCTGGAACAAGAGACCTTACCAACAGGGGTAGTCTGTTCCTTCTGACCTACCTGCTCTTCCCAGTCAATATCCTGGTGGGTGCGCTTTTGGGCATTTGGAGGTTGGTAATAACGGCTCTTTTCAACATTGTCCATTTGGGCCGTTTGGACATCAGCCTCCTCAACCGCAATGTAGAGGCTTTCGACCCAGGCTACCACTGCTATGCTCATTACCTGAAGATTGAGGTCAGCCAGTCTCACCCGGTGATGAAGGCCTTCTGTGGGCTGCTGCTCCAGGCTCCAGGTCAGGACAAGGGCTCTGGACAGGCCGTGCGGGATGCTGAAGAAGGAATCCAGCTTGTCTCACAGgacaagaaacaaaacaaaccagtttCTAATGGTAAACGGGCACGTGGACACTGGCATCTCCTCTATACTCTGGTCAACAATCCGTCCTTGGTGGGATCCAGGAAGCACTTCCAGAGGCAGAGCTCAGAGAGCTTCATCAACGGAACCCTGAACAGAAGCTCTAAAGAAGGCAGCAAAATGGAGGGTGGCGCCACAGAGGCCAGCAAAGAGGCAGAAGGAGCTGCCACTAACTAAGGACAGATTCTGttaacacagagaaacagacccCATTCACCCCCAACCACCAGGCTCTCTCTATACTTTATATTGGTTATCAGCCAGATAATGATGATAGTATTACTTATCTCTGTGTAGAAGTGAACTGCATCTGTTCTGGAAAAGTGCCCTTACAGCTTATAGTGCCTCAGGAAGAACTGCAGAATGTCTCTTTGTTTGTCTGGACGGATGGATGCATGATGTCcttcctttgtgtgtttttgcttgattattttttcattttttcactttttttcttttttgcccaGTTAATACATCTATCATGAAATTTAGCACTGCACTGAACTGCCcactcctaaaaataaaatgtgcttaATTTTTTGAGTGACgctatagaagaaccacttttagttccattaaaaaaaaaacatgtttgtaaTGGAGTTTAAGGTCTAGTAAACCATCActgtctgttgtttttgttatgtATGAGTTTGACtgaaatgtgtgagtgtgaagtaCCTTTTAAAAATCTTCTAAAATAAGTTCACTTGATGTTTCACTTAATTATTTGCCAATTTTCTACACCTGTAACAAACATGGTTCTTCTTCTTTAacaaaaagtggttcttctttgGCATCATcattgccaaaaaaaaacaacattcaaAGCACATGGAGTACCCTATAACTGTTTGTATGTGATGGCTAGATTGACTATTTATGATTGTACaggatgtgtgtttgtgtgttttctctctgaaaaaaaattattcatgTCTATGAGTTTTCAAACTTACATTTGTAAGTATGATTCACACTCATGATGAAAAGATTGAACTACTGCTTGTGTTCATTCAGAGTTGTTCTGTATAAGTGGACCatctttattatctttatatCTTTTGTCTCCGCTGTTGTTTTGCCACAATGCACAGATCAATGTAGGTTTCCATTGGAGACTGCAAAATCTACTTCTCAAAATAACACGGTAGAAACATCTTTGGAGGGGTAATATGTAGTTATGATTTTGATTATTTGGTTTCAAAAGTGCCTTGGGTGACTTTTGAATATGATGaatgaatacatttatttgtgaTTGAAcgaaataaatgttgaaaaaaaata

Function

symbol description
stra6 Enables calmodulin binding activity and identical protein binding activity. Acts upstream of or within chordate embryonic development and retinol transport. Is integral component of plasma membrane. Is expressed in several structures, including hindbrain neural plate; immature eye; nervous system; pleuroperitoneal region; and trunk. Used to study syndromic microphthalmia 9. Human ortholog(s) of this gene implicated in syndromic microphthalmia 9. Orthologous to human STRA6 (signaling receptor and transporter of retinol STRA6).

NR:

description
PREDICTED: stimulated by retinoic acid gene 6 protein homolog

GO:

id name namespace
GO:0009790 embryo development biological_process

KEGG:

id description
K23088 STRA6; vitamin A receptor/transporter (stra6) family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228246.3 True 3750 mRNA 0.44 19 15951937 15979103

Neighbor

gene id symbol gene type direction distance location
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding upstream 112090 15831457 ~ 15839847 (+)
stoml1 stoml1 coding upstream 123388 15821393 ~ 15828549 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding upstream 137315 15810409 ~ 15814622 (+)
LOC103046771 LOC103046771,LOC108442701 coding upstream 153486 15785953 ~ 15798451 (+)
sigirr sigirr coding upstream 196831 15739562 ~ 15755106 (+)
LOC103023069 commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913 coding downstream 48359 16027462 ~ 16031438 (+)
neil1 NA coding downstream 53271 16032374 ~ 16040050 (+)
LOC103024759 NA coding downstream 109762 16088865 ~ 16093616 (+)
usp3 usp3,LOC107659494 coding downstream 116106 16095209 ~ 16108728 (+)
fbxl22 fbxl22 coding downstream 142566 16121669 ~ 16133261 (+)
G73970 NA non-coding upstream 55415 15895719 ~ 15896522 (+)
G73941 pkp3,LOC107589311 non-coding upstream 186812 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 282168 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 322759 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 494080 15454935 ~ 15457857 (+)
G73975 NA non-coding downstream 14066 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 71606 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 155381 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 307155 16286258 ~ 16291939 (+)
G74182 NA non-coding downstream 394525 16373628 ~ 16373843 (+)
svip svip other upstream 374404 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 1030934 14891534 ~ 14921003 (+)
G73533 NA other upstream 1302386 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 3054006 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5324973 10272919 ~ 10626964 (+)
G74169 NA other downstream 307573 16286676 ~ 16288329 (+)
G74649 NA other downstream 2475748 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2491601 18470704 ~ 18479345 (+)
G74832 NA other downstream 3103713 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3161046 19140149 ~ 19322775 (+)

Expression


Co-expression Network