islr2 (islr2,LOC107662462)


Basic Information

Item Value
gene id islr2
gene name islr2,LOC107662462
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15979981 ~ 15984118 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228247.3
CTATGGAGGCGGGAACGCGCAATGGTTTCTGCTCCAACTCGAGCACAGTGAGAGAACAGCCTCCGGACTGCTCAGCGTTCCACTGACACTAAAATGTCTAATCTGCTGTCCATCAGCAAATATCTCTTCGTCTTCCAAAATAATACAGGAGTGTACAACATGATTTGGGATCGTTCTACTAACCACCACTAGATATTCGCCTTATATTCGCTCAGGTGTCGATCTGAATTATTTCTGTTCGAGGAGTGGAGATTCCCACGCACAGGTGCTGAAAATGGCAAGCAGGTACCTGGTCCTCCTTGCCCTGGGGACTGCTGTGATTGCCAGTGTGCAGAGCTGCCCTGAGCAATGTACCTGTTCAGATAAGAACCCCCATCACTTTGTGGACTGCGCTTACAAAGACCTTCTGCTGGTACCTTTGGGCTTGCCATCCAACGTGACGACTCTCAGCCTTTCAGCAAACAAGATCCAGGTGCTGAAATCCAAAAATTTCGTAAGCGTGACCCAGGTCACATCTCTTTGGCTTTCTCACAATGAAATTGTCACCATTGAGAGAAATACGCTGGCTCCAATGTCCCAGCTAAAGAATCTGGACCTAAGCCATAATAAAATTGTGAATTTTCCATGGGAGGACCTTGCCAACCTTTCCACTCTTCAGCTGCTGAAGATGAATCACAATGAGATGGTCAGCCTGCCCAAAGACGCTTTTACTAACCTGAAAGAGCTGCGTTCAGTGCGCATCAACAACAACAAGTTTACAACCATCATGGAAGGAACATTTAATCCTCTGATTGCCATGGTGCACCTTCAGATTTTCAGTAATCCTTTCAGCTGTTCATGTCAACTGGAATGGATGAGGGACTGGATTACTGGATCTCATTTGAAAATCTCCATCCCAGATCAGAACAACATCTTGTGTGATGCTCCCAGCGACCTGAAAGGTATAGAGGTTACCAAAATACCCAAACTGGACTGTCAAGCCCCAACTGTTACCATAACCTATCAGCCCAACATTGAAAGCACAGAAATATATGAGGGCTATATGGTCATCTTGAACTGTGAATCTAAGGGGAACCCCCAACCTACTGTTGAATGGGAAATTTTGGCAGGAAACCAACTACTGACATTCACCTTGCCATCCATTGTTGAAAAAAGTGAGGTGCCTATCAATGGAGCGCCCACTAACACCAGGTTCCTCATCTTTCAAAATGGCACCCTGATTATCCCTCGCATGAGCAAAAAAGAAGATGGCAACTACAGCTGCTCTGCGACCAATGACATGGGCAAAGCCCAAAGCACGGTGAAACTCACTATGGCTGGCACCAAAAAGCATGCCGTCAATTCTATCCTGGACACAAAAGCAGGCATCAGTCCATCTGGAAACAAGCCTGGCCCTAAGagctccaaaaacagtgtgatcAATATGTGGCCCAAACATGAGAAGACCAAACCTCTTCCAACTGGAACATCATCCATCACTATTAACAATGAACAAGTGGAGGAAGGCTCTGATTCTGTAATATTTGCCAGCAGGTGTGGAGTAAGTGATGGCACACAGTATATATCTAATCACGCTTTCAACCTGAGCTTGGATGATCTGAAACAGTACACTTTTGACTTTGGCGTGATTGCACTGGAGGTGTCTGAAACGGAGGCTAAAGTCCAGCTCAACCCTCTTCAGATGGCCAATGCCAAGTCGAACCTTCACCTTAGCCAAGCGCAAGACCCAGACACTGTTAACAAAGAGACGATCAGTATGTACCAGACGTCGCCCAAGAAGTCCCCTATGGacatgctgtatgtgtgtgttagcacGGGCAATGGACATTCAGTGGTGCAGTGGTCCAAGATAGAGGATGGTGTCAATACTTATCGCTTCCAGGGCTTAAAGCCAGGCACAAATTACACCCTGTGCCTCACCTATGGGGGTCAGGACTGCCAGGTGCAGGTGGTATTTACCACAAGAAAGAAAATCCCATCTTTGCTTATCATAGTGGTGGTCAGCATTTTCTTGCTGGCTTTGGCCACGGTGCCCCTGCTGGGAGCCACCTGCTGTCACCTACTGTACAAGTACCAGGGCAAGACCTACAAGCTGATCATGAAGGCACAGAATCCAGACCAGATGGAGAAGCACATCGCCACGGACTTCGACCCCAGAGCCTCCTTTGTGGAGTCGGAGAAGAACTTCAACCCGAGTGAGCTGGGCGAGGGAGAGGGAGAAGCTGATGGAGAGGAAGGAGAGGGTGAGGGAGAGGAGGTGGAGGGCAGCGTGGTGGCCGAGTCCATTCCCGAGTCGCAGTCCAAAACTCAGGAGGAATTTGAAGTGGGCTCCGAGTACAGCGACCGGTTACCTTTAGGCGCGGAGGCGGTGAATATATCTGAGGAGATAAACGGCAACTACAAAGAGCCACGCTGAAAGTAGCCCACATGTGTTGCTAAAGGGAACGGACGGTGTGTAAAATAGTTACTTTCGAACACATTCCAAACCAGGCGAATGCCGACTATGTCATCTCACGTTATTCTTGTGCCCTGAGAAAAGGCGCGCTACTCAGTTTTACCTCAGAAGTTTAGCTTAACAGCACATAGATATCTAAAGCGTATAGATATCTATGAGTTCGAATCTCAGACGGGGCTTTGGACTGTACTGCGAACAAAGGGACTGTACTTCAACAAACCTCAGACCAGTTCAGTTATACACTGAACCTAAAGTAAAGTCCACCTccttaaacaaacatttaaacatagaaaaaaatattggcatTTACGCATATCCATGTATAAATTCACAGTAGCCCATAGCGGCCAGTCATTAACCGAAACGCCCTGTAACCCAGGGTATAGTAAAGTGGTCATAAAGTGGTCATCTATAGCCCACATCTGAACCCACATTCAGAGGGTGCTGGAAAGGATTTCACCTCCTTCCACTGCACAACAAGGCATGAGCGTGTCTGTaaaaaagagagtaagaaaaagaaaaggacaaaaaacaacaacaaaacaaatgagTGACTCCATCCATTACTTGCCTCATTACTATCATAATTGTGATCCCTTCTGCGATCTGGTGCTTCAGATAATCCTCTCGCCTCTCTGGATGGATGAAATGAACGTGTCCTTTTCTCTGCTTTAAGATAACCTTGTTCGTGGCATGTCACACGTCCGTATTTTCCAGTGTGTTTTCTTATTATTCTAGGCTGTAGGACGGTAGATATTCTAAGTGTCGGTTTGTGCTGTAAAAGCcagtaaaaactgaaaaagatgTGCTCTTTTTATATCGCTCGCCGCTTCTCAGCGAGTGTCCTGTACATTTTTTTGGGGTGATTTCGTGTCGAACTGTTTAACGATgttgtaaagaaaaacaaacgaacaaacaaaaaaatcttccGACCCTACAAAGATTTTGATATGATTTTATGTACGTGAAACTTAATAAAATTGTGAAAAACGGACAtaca

Function

symbol description
islr2 Acts upstream of or within retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human ISLR2 (immunoglobulin superfamily containing leucine rich repeat 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228247.3 True 3455 mRNA 0.46 2 15979981 15984118

Neighbor

gene id symbol gene type direction distance location
ccdc33 ccdc33 coding downstream 123320 15839686 ~ 15856661 (-)
ano5 ano5 coding downstream 269375 15666349 ~ 15710606 (-)
LOC103041761 NA coding downstream 316694 15662002 ~ 15663287 (-)
slc17a6 slc17a6,slc17a6a,LOC107555703,LOC107570095,LOC107677426 coding downstream 319148 15645079 ~ 15660833 (-)
LOC111193057 NA coding downstream 355064 15621981 ~ 15624917 (-)
sema7a NA coding upstream 30247 16014365 ~ 16026901 (-)
man2c1 man2c1,LOC107682572 coding upstream 55947 16040065 ~ 16051577 (-)
ca12 ca12 coding upstream 70938 16055056 ~ 16085634 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 273220 16257338 ~ 16313325 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 333766 16317884 ~ 16350164 (-)
LOC111193099 NA non-coding downstream 26168 15853302 ~ 15953813 (-)
G73910 NA non-coding downstream 335729 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 402483 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 451519 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 525371 15449504 ~ 15454610 (-)
G74091 usp3,LOC107659494 non-coding upstream 119498 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 218406 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 234978 16219096 ~ 16222273 (-)
G74203 NA non-coding upstream 268374 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 302110 16286228 ~ 16292019 (-)
LOC103046265 pkp3 other downstream 199303 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 565368 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 765697 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1182698 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1434445 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 482971 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1892908 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1998629 17982747 ~ 18029747 (-)
G74791 NA other upstream 2955056 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 3008550 18992668 ~ 19008366 (-)

Expression


Co-expression Network