LOC103023069 (commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913)


Basic Information

Item Value
gene id LOC103023069
gene name commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16027462 ~ 16031438 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228249.3
gttgtCTAGCTCCATTCAGCTTCATCCAATAGGGGGCGATATGTGGCTAAGCCGCTTCAGACAGCGTACCACAGAATAAACGTCTACATAGAGGACTACAGACTACCATGAGGTTTAGGTTTTGTGGGGACTTGGACTGCCCGGACTGGGTGTTAGCTGAAATCAGCACACTAGCACGAATATCGAGCGTCAAGATGAAACTACTCTGCGTTCAGGTTATAAAAGATCTCCTAGATGAAGATATTGATTATGAAAAAGTGTCAAAGTTAACGTCTGATGCAAAATTTGAGAGTGGAGATATTAAAGCCAGTGTTGCAGTGCTGAGCTTTATTCTTTCCAGTGCTGCAAAGCATGATGTTGATGGCGAATCTCTGTCCAGTGAACTTCAGCAGTTAGGCTTGCCTAAAGAGCACACTACAGGACTTTGTAAATCCTATGAAGACAAGCATGCAGCCCTGCAACAGAAGCTGAAAGAGAGTAGCCTACGCTTGGGACGTTTGGAGGTGGTGAACTGGAGGGTGGATTACACTCTGAGCTCCAGTGAACTAAAGGAGGTGAACGAGCCTGTGGTCCAACTAAGGCTCCAGTCTCAGAACCCAGAGTCCGGCTCCTCAGAAACCAGTGTAGTTACTGTTGGAGCAGAGAAGTTTAGGGTGTTATTAACAGaacTCAAACAAGCTCAAGCTATGATGAATGCACTGCAGTGATTCAACCAtgcattattcattttaaagaaacaaatataaaaaaatatatattgtaataatatattACTGTGCAGATGTTTCAGGCACCTTAGAGAATTATGTTTAAAGGGCTGTTTAATGAATAgaaagtgtttaattttttagaaaatcacaactatcacaatataaatatatgcaacatgcatatatatgcaatatattcttatacttaataattaatcctaagtattatttttagttaCTATTCATGAGTTGGCCAAgaagttttgtttttgttcaaaATCAAGTTAAATATAAAGTACTGAACTGGACAGTGTGATGGCTCAGGGCATCAAGAAGAAATTTACATCCAAATGTTTCCTAATCTAACCAGCCCAAACTGTGTCAGATGATTTTCTTGTTAATTTTCACTGCACTTAttcttgtttgtattttttattttatttgatggtTTCTTACAGGCAAAAAACAACTTGAAACCCAATTGATTGTGaattgttttaaacagtttgCTAAGGTGCCTTAAACTTTTGCGTGGTACTGTATTCTGTATAATAAGACATGTTTTCTGAATCTGTATGTCAtttcaaattattaaaatgtaaatgtgatgaaaatgtaaaatattactaCGAACATCACTGTCTCGCAGAACGGTTTGAGAGGAGGTGGAAAAGATTTCTTGGAATGAAGACCAAACTACACAAAATTCTTTTCATTTGATTGGTGGCTCCACATTGAATTCTTTAAGCAAATTCACTGTGTGTTTTGAAGAAATATTTTGTATaagtttgtatgtttttttattaatgttagctaaataaataatctaaccATTTTCCA

Function

symbol description
commd4 Orthologous to human COMMD4 (COMM domain containing 4).

NR:

description
COMM domain-containing protein 4

GO: NA

KEGG:

id description
K22560 COMMD4; COMM domain containing 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228249.3 True 1550 mRNA 0.36 8 16027462 16031438

Neighbor

gene id symbol gene type direction distance location
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding upstream 48359 15951937 ~ 15979103 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding upstream 187615 15831457 ~ 15839847 (+)
stoml1 stoml1 coding upstream 198913 15821393 ~ 15828549 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding upstream 212840 15810409 ~ 15814622 (+)
LOC103046771 LOC103046771,LOC108442701 coding upstream 229011 15785953 ~ 15798451 (+)
neil1 NA coding downstream 936 16032374 ~ 16040050 (+)
LOC103024759 NA coding downstream 57427 16088865 ~ 16093616 (+)
usp3 usp3,LOC107659494 coding downstream 63771 16095209 ~ 16108728 (+)
fbxl22 fbxl22 coding downstream 90231 16121669 ~ 16133261 (+)
LOC103025905 LOC108433646 coding downstream 180162 16211600 ~ 16222093 (+)
G73975 NA non-coding upstream 33626 15993169 ~ 15993836 (+)
G73970 NA non-coding upstream 130940 15895719 ~ 15896522 (+)
G73941 pkp3,LOC107589311 non-coding upstream 262337 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 357693 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 398284 15571269 ~ 15629178 (+)
G73990 man2c1,LOC107752311 non-coding downstream 19271 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 103046 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 254820 16286258 ~ 16291939 (+)
G74182 NA non-coding downstream 342190 16373628 ~ 16373843 (+)
G74191 acsbg1 non-coding downstream 415842 16447280 ~ 16450389 (+)
svip svip other upstream 449929 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 1106459 14891534 ~ 14921003 (+)
G73533 NA other upstream 1377911 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 3129531 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5400498 10272919 ~ 10626964 (+)
G74169 NA other downstream 255238 16286676 ~ 16288329 (+)
G74649 NA other downstream 2423413 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2439266 18470704 ~ 18479345 (+)
G74832 NA other downstream 3051378 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3108711 19140149 ~ 19322775 (+)

Expression


Co-expression Network