man2c1 (man2c1,LOC107682572)


Basic Information

Item Value
gene id man2c1
gene name man2c1,LOC107682572
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16040065 ~ 16051577 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228250.3
TCATTTAATCCCATTCTCTCCATTCTCTTCCGGGGGCTAAGTGCAGCTGGAACTATCCTGCACCCCTGCAGCACCAACTccagtttaaaaggttttaatgCGGTTATTTCATCATGTATCACCTCCCGGTACTGAAGAACAGGCGGACTCTGCTGGAGCGAGGAGAGAAATTTATCTCTGACGTTTATTTTACAGACTGTAACCTGAGAGGAAGGCTCTATGGAGACACTTGTCCACTTGAGTCCATCACAGTGTTCCAGACTGCTAAGCGCATCCCCTACTCAGAGGCAGTCCAGCAGAACTTTCAGCCATGCAAAGTTGGGGATTCCTTTGGACCCACaTGGTGGACTTGCTGGTTCAAAATAGCCCTGAAGATCCCAGAGGCCTGGAAGGGAAAGGAGGTTCATCTGAGATGGGAAAGTGATGGAGAGGGAATGGTATGGCGAGACCAAGAACCAGTTCAGGGATTGACTAAAGAGGGTGAAAAGACCAGTTACATCCTGACTGAGTGCCTGACAGAGAATGAACCTTACAGCATCACACTGTTTGTGGAGCTGGCCTGTAATGGACTTTTTGGGGCTGGACAAGGCTCCATGATTGCTGCCCCTGACCCTAATAGAAAATATACTCTTCAGAAGGCTGAGCTTGTTGTTTTTAACAGTGAAGTGCAGGAACTTCTCACAGACTTTGAAATGTTACTGGACATTGTTAagTTATTAGGTGAAGGAGAGCAACGTGGCTATCAGGCTTTGTTCACAATGAACGAGATGGTGAATCTGTGTGACCCAGCCAATCCTGGCACGTGGTCTAAAGCTCGGAGCCTGGCCCAGAAGTTCTTCAGCCAGAAGAATGGGGAGAGCCAGCACATTGTGCATGCCATGGGCCACTGTCACATTGACTCAGCCTGGTTGTGGCCGTATGAGGAGACTATCAGGAAATGTGCTCGGAGCTGGGTCACAGCAGTTCGTTTAATGGAGAAAAACCCTGAATTTATCTTTACCTGCTCCCAGGCCCAGCAGTTTCAGTGGGTGAAGGACTGGTATCCAGGCCTGTTCTCTCAGATTCAGCACTTTGTGCAGAAAGGACAATTTGTTCCAGTTGGAGGAACGTGGGTGGAGATGGATGGGAACttgccttctggagagtccatGGTCCGACAGTTTCTAGAGGGACAAAACTTCTTTAAAGCAGAGTTCGGACAATACTGCAAGGAGTTCTGGTTGCCAGACACATTTGGTTACTCAGCTCAGCTTCCTCAGCTAATGCAAGGCAGTGGAATCTCCCGCTTTCTCACTCAAAAATTAAGTTGGAACCTTGTGAACACATTTCCACACAACACATTCTTTTGGGAGGGTATTAATGGCTCCCTGGTGCTGACTCACTTTCCTCCGGGGAATTCGTATGAGATGAAAGGCAGGGTTGAGGATCTTATCAACACCTTAAAGAATAACAAAGACAAGGGGCGAGCGAATCACAGTGCAGTGCTTTTCGGGTTCGGAGATGGGGGTGGTGGCCCCACTCAGCTGATGCTGGACCGGTTGCAGCGCGTACAGGATTCAGACGGTCTCCCCAGGGTCCATATGTCCAACCCGGATCGACTGTTCTCTGAACTCCAGGCTGATTCAAGTCTGCTGTGTACCTGGTCTGGTGAGCTATTTCTTGAGCTGCACAATGGCACTTATACCACACAGGCAAAGATAAAGCTGGAGAATCGTCGCTGTGAGGCTCTTCTGCATGATATTGAGGTGGCCAGCTGCCTGGCTCTTACTCAAACCGCAGGTTTCGAATATCCAACAGAAAAGCTCCAGAAGCTGTGGAGGCTTCTTCTGCTCAACCAATTCCATGATGTAATTCCAGGCAGTTGCATTGAAATTGTGGTGGAGGATGCCCTGGAATATTACAATGAGATTGAAAAGACAGGATCTGGACTCCTGCACTCTGCCTGTAATGCACTACGGACAAGTCCTTGGTTGGGAGCGGGTTCCAGTCCAGCCTTTCTCAACACGCTCCCCTGGGAACGCACTGAAGTCATAGCACTGACAGAAGATGGCGCTCAGACAAAACTAGCCTTGGTGAAAGCTCCCAGTGTGGGTGTATCGCCAGTCACCGCATCTGCTGAGTCTGTGTCTACGGTGTCCATAACAGAGCTGGCTGATGGCTCAGTCCGAATGGAGAATGGCCTTCTTTCGGCTGTCCTGGACAACATGGGTCGCCTGGTGTCCCTGATTTTAGTGCAAACAAACAGAGAGGCCATatctgatggttgttttggcaACCAGTTTGTGGTGTTTGATGATGTCCCGTTATACTGGGATGCTTGGGATGTAATGGACTACCATCTTCAAACCAGGAAGCCAATAGTGGATGTGACCCGGCCTGTTGAAGTGGTGAGCACTGGTGGGCTGCGAGGTAGTGTCAAATTTTCTCTACAAATCAGCGGAAAAAGCAGCATAACTCAGGAAGTTATACTGGATGCCAACTGCCCATACATCAAGTTCAAAACAAAAgtggacTGGGCAGAGGCCCATAAGTTCCTTAAGGTGGAGTTTCCTGTGCAAGTGCGAAGTCCCAATGCCACCTATGAGATCCAGTTTGGTCACTTGCAGAGaccaacacacagaaacacatccTGGGATTGGGCTCGCTTTGAGGTCTGGGGCCATAAATGGGCTGATCTCTCAGAGCATGGTTTTGGTGTGGCTCTTTTAAATGACTGCAAATACGGCTACTCTGTTTATCAGAATATCATGACCTTATCCTTGCTACGAGCTCCAAAAGCTCCTGATGCAAATGCAGATATGGGACAACATGAGTTCACATACGCTGTGATGCCACATGCAGgcTCTTTCCAGGAAGCAGCAGTCATACAGCATGCGTACAACTTGAACTTCCCGCTGCGTCTGATCCATGACGTTAAGGTGGCCCAGCCCTGGAGTGCGTTTACTCTGAATACATCAGCTGTCATCCTGGAAACTGTGAAACAAGCGGAAGGAAAGAAGAACGCCCTTGTCGTTCGTCTGTATGAATCCCATGGAAGCAGTGTGTCTGCAGTGCTGTCTACTTCCCTTTCAGTGCAGGAGGCATGGTATTGTGACCTGTTGGAACGTCCTGATACCGCTCACCCTGCTTCATTCACTGGTTCCAAAATCTCCCTCACATTTAAACCCTTTCAGATCATCTCACtcctgctacaactgcactgagCACAGAACAGCTGGTTGATGTTTTACaaggatatttttttataattataatgaagcattgtttttttttcgacATATATTTCTAcactttttttgcaaatatgttCTGTTAAATTGTATAAGGTAATCGTTATATTTGTAATTTCTGTAATTATATTGCCGATATGTTTTgtaaatcacaaataaaatcaaagaacacAAAAACTA
>XM_022672195.1
CAGTCATTTAATCCCATTCTCTCCATTCTCTTCCGGGGGCTAAGTGCAGCTGGAACTATCCTGCACCCCTGCAGCACCAACTccagtttaaaaggttttaatgCGGTTATTTCATCATGTATCACCTCCCGGTACTGAAGAACAGGCGGACTCTGCTGGAGCGAGGAGAGAAATTTATCTCTGACGTTTATTTTACAGACTGTAACCTGAGAGGAAGGCTCTATGGAGACACTTGTCCACTTGAGTCCATCACAGTGTTCCAGACTGCTAAGCGCATCCCCTACTCAGAGGCAGTCCAGCAGAACTTTCAGCCATGCAAAGTTGGGGATTCCTTTGGACCCACaTGGTGGACTTGCTGGTTCAAAATAGCCCTGAAGATCCCAGAGGCCTGGAAGGGAAAGGAGGTTCATCTGAGATGGGAAAGTGATGGAGAGGGAATGGTATGGCGAGACCAAGAACCAGTTCAGGGATTGACTAAAGAGGGTGAAAAGACCAGTTACATCCTGACTGAGTGCCTGACAGAGAATGAACCTTACAGCATCACACTGTTTGTGGAGCTGGCCTGTAATGGACTTTTTGGGGCTGGACAAGGCTCCATGATTGCTGCCCCTGACCCTAATAGAAAATATACTCTTCAGAAGGCTGAGCTTGTTGTTTTTAACAGTGAAGTGCAGGAACTTCTCACAGACTTTGAAATGTTACTGGACATTGTTAagTTATTAGGTGAAGGAGAGCAACGTGGCTATCAGGCTTTGTTCACAATGAACGAGATGGTGAATCTGTGTGACCCAGCCAATCCTGGCACGTGGTCTAAAGCTCGGAGCCTGGCCCAGAAGTTCTTCAGCCAGAAGAATGGGGAGAGCCAGCACATTGTGCATGCCATGGGCCACTGTCACATTGACTCAGCCTGGTTGTGGCCGTATGAGGAGACTATCAGGAAATGTGCTCGGAGCTGGGTCACAGCAGTTCGTTTAATGGAGAAAAACCCTGAATTTATCTTTACCTGCTCCCAGGCCCAGCAGTTTCAGTGGGTGAAGGACTGGTATCCAGGCCTGTTCTCTCAGATTCAGCACTTTGTGCAGAAAGGACAATTTGTTCCAGTTGGAGGAACGTGGGTGGAGATGGATGGGAACttgccttctggagagtccatGGTCCGACAGTTTCTAGAGGGACAAAACTTCTTTAAAGCAGAGTTCGGACAATACTGCAAGGAGTTCTGGTTGCCAGACACATTTGGTTACTCAGCTCAGCTTCCTCAGCTAATGCAAGGCAGTGGAATCTCCCGCTTTCTCACTCAAAAATTAAGTTGGAACCTTGTGAACACATTTCCACACAACACATTCTTTTGGGAGGGTATTAATGGCTCCCTGGTGCTGACTCACTTTCCTCCGGGGAATTCGTATGAGATGAAAGGCAGGGTTGAGGATCTTATCAACACCTTAAAGAATAACAAAGACAAGGGGCGAGCGAATCACAGTGCAGTGCTTTTCGGGTTCGGAGATGGGGGTGGTGGCCCCACTCAGCTGATGCTGGACCGGTTGCAGCGCGTACAGGATTCAGACGGTCTCCCCAGGGTCCATATGTCCAACCCGGATCGACTGTTCTCTGAACTCCAGGCTGATTCAAGTCTGCTGTGTACCTGGTCTGGTGAGCTATTTCTTGAGCTGCACAATGGCACTTATACCACACAGGCAAAGGTTTGCAGCCttctatcaaaaaaaaaaaaaacatttagctgTGTAGTTTTAACTTCACTCTGTCTTAAGActttgtgtatgtttgtgttacAGATAAAGCTGGAGAATCGTCGCTGTGAGGCTCTTCTGCATGATATTGAGGTGGCCAGCTGCCTGGCTCTTACTCAAACCGCAGGTTTCGAATATCCAACAGAAAAGCTCCAGAAGCTGTGGAGGCTTCTTCTGCTCAACCAATTCCATGATGTAATTCCAGGCAGTTGCATTGAAATTGTGGTGGAGGATGCCCTGGAATATTACAATGAGATTGAAAAGACAGGATCTGGACTCCTGCACTCTGCCTGTAATGCACTACGGACAAGTCCTTGGTTGGGAGCGGGTTCCAGTCCAGCCTTTCTCAACACGCTCCCCTGGGAACGCACTGAAGTCATAGCACTGACAGAAGATGGCGCTCAGACAAAACTAGCCTTGGTGAAAGCTCCCAGTGTGGGTGTATCGCCAGTCACCGCATCTGCTGAGTCTGTGTCTACGGTGTCCATAACAGAGCTGGCTGATGGCTCAGTCCGAATGGAGAATGGCCTTCTTTCGGCTGTCCTGGACAACATGGGTCGCCTGGTGTCCCTGATTTTAGTGCAAACAAACAGAGAGGCCATatctgatggttgttttggcaACCAGTTTGTGGTGTTTGATGATGTCCCGTTATACTGGGATGCTTGGGATGTAATGGACTACCATCTTCAAACCAGGAAGCCAATAGTGGATGTGACCCGGCCTGTTGAAGTGGTGAGCACTGGTGGGCTGCGAGGTAGTGTCAAATTTTCTCTACAAATCAGCGGAAAAAGCAGCATAACTCAGGAAGTTATACTGGATGCCAACTGCCCATACATCAAGTTCAAAACAAAAgtggacTGGGCAGAGGCCCATAAGTTCCTTAAGGTGGAGTTTCCTGTGCAAGTGCGAAGTCCCAATGCCACCTATGAGATCCAGTTTGGTCACTTGCAGAGaccaacacacagaaacacatccTGGGATTGGGCTCGCTTTGAGGTCTGGGGCCATAAATGGGCTGATCTCTCAGAGCATGGTTTTGGTGTGGCTCTTTTAAATGACTGCAAATACGGCTACTCTGTTTATCAGAATATCATGACCTTATCCTTGCTACGAGCTCCAAAAGCTCCTGATGCAAATGCAGATATGGGACAACATGAGTTCACATACGCTGTGATGCCACATGCAGgcTCTTTCCAGGAAGCAGCAGTCATACAGCATGCGTACAACTTGAACTTCCCGCTGCGTCTGATCCATGACGTTAAGGTGGCCCAGCCCTGGAGTGCGTTTACTCTGAATACATCAGCTGTCATCCTGGAAACTGTGAAACAAGCGGAAGGAAAGAAGAACGCCCTTGTCGTTCGTCTGTATGAATCCCATGGAAGCAGTGTGTCTGCAGTGCTGTCTACTTCCCTTTCAGTGCAGGAGGCATGGTATTGTGACCTGTTGGAACGTCCTGATACCGCTCACCCTGCTTCATTCACTGGTTCCAAAATCTCCCTCACATTTAAACCCTTTCAGATCATCTCACtcctgctacaactgcactgagCACAGAACAGCTGGTTGATGTTTTACaaggatatttttttataattataatgaagcattgtttttttttcgacATATATTTCTAcactttttttgcaaatatgttCTGTTAAATTGTATAAGGTAATCGTTATATTTGTAATTTCTGTAATTATATTGCCGATATGTTTTgtaaatcacaaataaaatcaaagaacacAAAAACTA

Function

symbol description
man2c1 Predicted to enable alpha-mannosidase activity. Predicted to be involved in oligosaccharide catabolic process. Predicted to act upstream of or within mannose metabolic process. Orthologous to human MAN2C1 (mannosidase alpha class 2C member 1).

NR:

description
alpha-mannosidase 2C1

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01191 MAN2C1; alpha-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228250.3 False 3410 mRNA 0.48 26 16040065 16051574
XM_022672195.1 True 3506 mRNA 0.47 25 16040065 16051577

Neighbor

gene id symbol gene type direction distance location
sema7a NA coding downstream 13164 16014365 ~ 16026901 (-)
islr2 islr2,LOC107662462 coding downstream 55947 15979981 ~ 15984118 (-)
ccdc33 ccdc33 coding downstream 183404 15839686 ~ 15856661 (-)
ano5 ano5 coding downstream 329459 15666349 ~ 15710606 (-)
LOC103041761 NA coding downstream 376778 15662002 ~ 15663287 (-)
ca12 ca12 coding upstream 3479 16055056 ~ 16085634 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 205761 16257338 ~ 16313325 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 266307 16317884 ~ 16350164 (-)
cib2 cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243 coding upstream 332972 16384549 ~ 16414345 (-)
acsbg1 NA coding upstream 395919 16447496 ~ 16457754 (-)
LOC111193099 NA non-coding downstream 86252 15853302 ~ 15953813 (-)
G73910 NA non-coding downstream 395813 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 462567 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 511603 15448674 ~ 15528462 (-)
G74091 usp3,LOC107659494 non-coding upstream 52039 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 150947 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 167519 16219096 ~ 16222273 (-)
G74203 NA non-coding upstream 200915 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 234651 16286228 ~ 16292019 (-)
LOC103046265 pkp3 other downstream 259387 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 625452 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 825781 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1242782 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1494529 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 415512 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1825449 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1931170 17982747 ~ 18029747 (-)
G74791 NA other upstream 2887597 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2941091 18992668 ~ 19008366 (-)

Expression


Co-expression Network