neil1


Basic Information

Item Value
gene id neil1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16032374 ~ 16040050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228252.3
tgatgagGGAGGAAATAGAACTACAGCTCCCATCAGCCCCCGGGTTTCCGTTTCGTAAACATAAACTGGAGCTCGTCCTGCTGCAGAAAtttcCAGAGAACAATGCCAGAGGGTCCTGACCTCCACTTGGCCGGCCTGTTTGTGAACAGAGTATGTACAGGTGTGGTCTTCACTGGAGCTGTGATCAAGTCTGAAGTCAGTAAAGGACCCCAGATTCCCTTTGCCTGCGATGCCTACCTGATCAGCGCCGTGTCCAGAGGGAAGGAAGTTCGTCTCACACTCACGCCCATAAAGAGTGacacaaaaagcaaaaagaaggCAAAGGAAGAGCAGTCGCCCATGGATGTGGTCTTTCGTTTTGGGATGTCTGGTTATTTTCGTTTCACAACTGTAGAGGACCTCCCAAAGCACGCCCACGTTCAGTTCTACACCAGAGATGAACCGCAGAGGGTGCTGAGTTACGTAGATGCTCGCAGATTTGGCAGCTGGCAGCCTAATGGGACCTGGCAACGAGATCGAGGACCTTGTGTCCTGTTTGAGTATGAGAGCTTCAGGCAGAATGTTTTGTCCAACCTGTCAGACAAGGCTTTTGACCGGCCCATCTGTGAGGCGATGCTAAATCAGAAGTACTTCAACGGGATTGGTAACTACCTACGAGCAGAAATTCTGTACAGATTAAACATCCCTCCCTTCATGAAGGCAAGGACTGTGTTGGAGGGACTTTTGCCTGAAGATGAAGACACAAAGGAGGTTAAAGAGGCTGCTGGGGAGAATTGTGATACAGCTGGGAAGAGGAAATTGAAAACTGAGAGTCCTGatattctctcactctgtcacACGGTACCACTGGAGGTGGTTGAACTTGCTGGAAAAGGATATGCCCCAGAGAAGGCAGATTACCGGGCAATTGAAAACTGGTTTCAGTGTTACTTTGTGGAAGGGATGAACAGTCTAAGTGACCACAATGGAAGAACTATATGGTTTAAGGGTGATGCTGGACCAATGGCACCTAAAGGTTCTAAAGCTTCCAAAACAAAAGGGAAAATACAGAAACGTGAACATGAGTATACCAGTGCAAAGGGTGCAAAAAGGAAACCGACTGCTAGTGTTTCAAAGGAGAAGCCTACAAAGAAGGCAGCAGGTACTGTGAAAATGGAAGTTGATGAACCTAAAAGACGGAGCAGCACCAGGAGACAGAATGGGAACAAGAAGAGAGCTGATACAGAATCTGATCAGAACAAAAAACCTCAAACACTCAGAAAGAGCAGTTCACCAGGGCCTCAGGCTAGCAGGACTAGGAGCACAAGAAGGCAGAGTGGACATGAAAGCAACACTAAAGGGAGATGCACCGCTACATCTCGGAGGAAGAAAAGAACAGCAGTTTAGAaAAAAATTGATATGTGATCATTGATATTTTAGGTCTAAAGAACCTTTTGGAACTTGATGTGAAAGTTCTTTGCCAATGTAAAGGTTCTTcactaaataaaatgtgttttttctatATCGTTGTACAGAGATCCCtttgaagcacctttattttcagGAGTGCATGTAAAACTGCATTTCCCCCAAAGGGTAAACTATAAagttagatttttgtttttgttatatgAACTAAAGATTTGTAGGATCACTGTTAAgggttttgtatttttataatttaatctgTCTATTTTATTAAGCCTTACcttataattagtttttttttgtgatttatgCAACATGCAGACAAGCtaaaactgaatttatttggaagataattaaaaacaatttcagaaaatccaaaaaaatacatataaacatacatatttgaactgaaaaaatgtataaaaaggaCATATATCTGAACTACTGTGTGAAGCTGTTAttgcagtactgtatttttatactgtattctgactatttttttaatgattgtgattaaaaagcCTGTTTTAATTCA
>XM_022672196.1
CTTCATCTGCACAGAGAGACCAAAAATCAAAACCTGACCACTGTTGTTGTAGATCAGCTCTGATCAGCGTTCACATAGAGCAGCCCTGAGGAGAGTTAGTTACAGGTTTAGTGTTCAGtttcCAGAGAACAATGCCAGAGGGTCCTGACCTCCACTTGGCCGGCCTGTTTGTGAACAGAGTATGTACAGGTGTGGTCTTCACTGGAGCTGTGATCAAGTCTGAAGTCAGTAAAGGACCCCAGATTCCCTTTGCCTGCGATGCCTACCTGATCAGCGCCGTGTCCAGAGGGAAGGAAGTTCGTCTCACACTCACGCCCATAAAGAGTGacacaaaaagcaaaaagaaggCAAAGGAAGAGCAGTCGCCCATGGATGTGGTCTTTCGTTTTGGGATGTCTGGTTATTTTCGTTTCACAACTGTAGAGGACCTCCCAAAGCACGCCCACGTTCAGTTCTACACCAGAGATGAACCGCAGAGGGTGCTGAGTTACGTAGATGCTCGCAGATTTGGCAGCTGGCAGCCTAATGGGACCTGGCAACGAGATCGAGGACCTTGTGTCCTGTTTGAGTATGAGAGCTTCAGGCAGAATGTTTTGTCCAACCTGTCAGACAAGGCTTTTGACCGGCCCATCTGTGAGGCGATGCTAAATCAGAAGTACTTCAACGGGATTGGTAACTACCTACGAGCAGAAATTCTGTACAGATTAAACATCCCTCCCTTCATGAAGGCAAGGACTGTGTTGGAGGGACTTTTGCCTGAAGATGAAGACACAAAGGAGGTTAAAGAGGCTGCTGGGGAGAATTGTGATACAGCTGGGAAGAGGAAATTGAAAACTGAGAGTCCTGatattctctcactctgtcacACGGTACCACTGGAGGTGGTTGAACTTGCTGGAAAAGGATATGCCCCAGAGAAGGCAGATTACCGGGCAATTGAAAACTGGTTTCAGTGTTACTTTGTGGAAGGGATGAACAGTCTAAGTGACCACAATGGAAGAACTATATGGTTTAAGGGTGATGCTGGACCAATGGCACCTAAAGGTTCTAAAGCTTCCAAAACAAAAGGGAAAATACAGAAACGTGAACATGAGTATACCAGTGCAAAGGGTGCAAAAAGGAAACCGACTGCTAGTGTTTCAAAGGAGAAGCCTACAAAGAAGGCAGCAGGTACTGTGAAAATGGAAGTTGATGAACCTAAAAGACGGAGCAGCACCAGGAGACAGAATGGGAACAAGAAGAGAGCTGATACAGAATCTGATCAGAACAAAAAACCTCAAACACTCAGAAAGAGCAGTTCACCAGGGCCTCAGGCTAGCAGGACTAGGAGCACAAGAAGGCAGAGTGGACATGAAAGCAACACTAAAGGGAGATGCACCGCTACATCTCGGAGGAAGAAAAGAACAGCAGTTTAGAaAAAAATTGATATGTGATCATTGATATTTTAGGTCTAAAGAACCTTTTGGAACTTGATGTGAAAGTTCTTTGCCAATGTAAAGGTTCTTcactaaataaaatgtgttttttctatATCGTTGTACAGAGATCCCtttgaagcacctttattttcagGAGTGCATGTAAAACTGCATTTCCCCCAAAGGGTAAACTATAAagttagatttttgtttttgttatatgAACTAAAGATTTGTAGGATCACTGTTAAgggttttgtatttttataatttaatctgTCTATTTTATTAAGCCTTACcttataattagtttttttttgtgatttatgCAACATGCAGACAAGCtaaaactgaatttatttggaagataattaaaaacaatttcagaaaatccaaaaaaatacatataaacatacatatttgaactgaaaaaatgtataaaaaggaCATATATCTGAACTACTGTGTGAAGCTGTTAttgcagtactgtatttttatactgtattctgactatttttttaatgattgtgattaaaaagcCTGTTTTAATTCA

Function

NR:

description
endonuclease 8-like 1

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0004519 endonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10567 NEIL1; endonuclease VIII-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228252.3 False 1942 mRNA 0.42 11 16032374 16040050
XM_022672196.1 True 1971 mRNA 0.42 11 16032516 16040050

Neighbor

gene id symbol gene type direction distance location
LOC103023069 commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913 coding upstream 936 16027462 ~ 16031438 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding upstream 53271 15951937 ~ 15979103 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding upstream 192527 15831457 ~ 15839847 (+)
stoml1 stoml1 coding upstream 203825 15821393 ~ 15828549 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding upstream 217752 15810409 ~ 15814622 (+)
LOC103024759 NA coding downstream 48815 16088865 ~ 16093616 (+)
usp3 usp3,LOC107659494 coding downstream 55159 16095209 ~ 16108728 (+)
fbxl22 fbxl22 coding downstream 81619 16121669 ~ 16133261 (+)
LOC103025905 LOC108433646 coding downstream 171550 16211600 ~ 16222093 (+)
sh2d7 LOC103027007 coding downstream 319879 16359929 ~ 16369370 (+)
G73975 NA non-coding upstream 38538 15993169 ~ 15993836 (+)
G73970 NA non-coding upstream 135852 15895719 ~ 15896522 (+)
G73941 pkp3,LOC107589311 non-coding upstream 267249 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 362605 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 403196 15571269 ~ 15629178 (+)
G73990 man2c1,LOC107752311 non-coding downstream 10659 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 94434 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 246208 16286258 ~ 16291939 (+)
G74182 NA non-coding downstream 333578 16373628 ~ 16373843 (+)
G74191 acsbg1 non-coding downstream 407230 16447280 ~ 16450389 (+)
svip svip other upstream 454841 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 1111371 14891534 ~ 14921003 (+)
G73533 NA other upstream 1382823 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 3134443 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5405410 10272919 ~ 10626964 (+)
G74169 NA other downstream 246626 16286676 ~ 16288329 (+)
G74649 NA other downstream 2414801 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2430654 18470704 ~ 18479345 (+)
G74832 NA other downstream 3042766 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3100099 19140149 ~ 19322775 (+)

Expression


Co-expression Network