ca12 (ca12)


Basic Information

Item Value
gene id ca12
gene name ca12
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16055056 ~ 16085634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228253.3
TCGCTCTCTCTGTGTAAAAACGGCGCTTTGCCTCAGTGTTTGTCTGTCCTCTCGCTGGTTAATTAGCTTCGTGTGAAGTCACGGCTCACAAACAGCCTCAACAACTCGCTCGCGCTCTGTGGATGTTCCGTCATGGCAGTGACGTCAGGGCTGGACAGATTGAACATGTCATGCTTAGTATAAAAGGCAGCTCCTATTACACGGTGTTATGATTTCTCTTCTGAGGCACTTTCTGCGTGATAAGAGAAGAAGACCGTGGTCATGATGCCTTTCACTCTGTTAATAATGATCCTCATAGCTTTCCCAGTGTCTTCCAATGGTGGAAAGTGGGGATACAATGGGCCTAATGGAGAGCACCACTGGCCCAAGCACTTTCCATACTGTGGTGGGGCATTCCAGTCTCCAGTAAACTTCCAGCCAGAGTTGCTAAGGTATGATCCGAACCTGTTCGCCATCCAGCTTCAGAACTACAACCTGTCCAGCAGGGAGCAGCTCACTTTAAGCAACAATGGACACTCAGTGCAGCTGTCTTTACCATCCTATATGCAGCTGACTGGCCTGCCCCATCGCTATTCAGCAGCTCAGCTTCACTTCCACTGGGGCACCCAAAATGTGCAGGCTGGCTCTGAACACACGGTTAATGGCAAGCAGTTTGCAGCTGAGATGCATGTGGTACATTTCAACTCTGGCAAGTATCCCAACATCTCCATGGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTAGGAGTTTTCATTGAGGTTGGCGAGTTCAATCCTGCTTTTGAGAAGTTCTTTAAGTATGTCAATGGCATAAAATATAGAGACCAGAAAGTGCAAGTGCCAGCATTCAACATCCGGGAACTGCTGCCTTCTCGTTTGGATGAATATTACCGTTATGATGGCTCTCTCACCACACCACCCTGCTTCCCAAGTGTGCTGTGGACAGTGTTCAGACAGCCTGTCACCATCTCACTCAGACAGTACCTGGCACTGGCCACTGCTCTGTACTCTTCGCATGCTCAAGAGGTGGCCCCGATGCCCATGCTTGGCAACTACCGTAAGCCACAGCTAATGGACAACAGAGTGGTGTTGGTGTCCTTCCAGGATGGCTGGGCGCTGCGTGGTACTCTTTCAGTGGCATCTCCCACACAGAGGAGGCAGGTCATCCAACAGCTGCTGCAGGGAGACCTTGCAGACTTGGCAGATGAAAAACTCCACCAACTTTTGCCAAAGATCAAACGCAAGCCATGGGCTCCTAAGGAGTGGAAGAATGATCTGATCCACCAGCAGagtcaaaaacagagaaacaaggTGCCGGGCCCCAATGGAAAAAACCTCCCGGTCTTAAAGAACACAGACCCAAGCCTCAGTCTGGCAAAGCTTGGTATAAATGAGGatgcactgtgttttatatctaTGGAAAAGAACGTATCTTTTCAGCTGCTGAGACGTCACGCAAACGAGGAGATGGTCCATGCTCTGAAAAGAGTTGTCTTCCCAGAGCTAAACCTTAGAAGCTATTTAAAGTGCAAATCTGATTTGGACCTGCAGACCATAAGGTGTCTTCTCCGCACCAGACCTACAGATGAGGCGGCAGAGCTGGAGCAGTCCCTAACCAAAGCCACCAGGACGGATAGACAGCAGACCATGCCTCTGCCGAGATCCATGACACCGAACCGTGGCTCAGCGTTGACCAAGCTGGCAGGACAGACCCCAATTACTGCTCTGAAGAATGCCCACAACATGTTCCCCCCTTTCTACAGACAGATTCCTGTAGAGTATGAAGATTAGCAACCAGAATACAATCTCACAACCAGAGCAGAGCACATTACAGTAGGCAGCAAAGAATTTACTTCAATTCTGAATGCTGTGGGACATCACAGATTCTCACAAAACTCTATTTAAGGTTTTAGTCTgtcttttatctgtttttttttcttttgcttcagCAATATCTAGACAAAAGTAGTAGCAGAATTATAATAGCAGATTTCAGGATATTTATGTAGCTGCAGACGCACAGAagtcttattctatttattctatCCTATTCTATTGATTTGAAATTATGCAATGATGGTACTTTAATCTTATGCTGCTTTCAAAATCTCTACTAGTCACAGAAATAGAACAGTGCATGATGTGTCAGCCATGTTACAGCAAAGTTAAACatctcaacaataaacacagcttgcatggaggaaagcgcagcaactcagttgcgatacatcagctcagttgcgatacatcagctcacagatgccttatgctgcggacatcacccttttagtGATGTGAGAAGAGAAAGTGCCATCttcccatccagagagagcaaggccaattgtgctctctcaggggtcAGGTAGCCCTGAGATGGCAAGcaacatgaccgggattcaaaccggcgatctccttATCATAGCGCCAGCTTGGAGCCCAACAATATACTCTTTTTTATCTGGAACAAGCACATGTCTTATCAGGGATAGTCAAAACACTTGGGAGAAATGTGTTATATTTgatgttatatttattaaaagtgctagtaaatattaatttaaggaCACAGGTTTTCTTTCATGCAATATAAACTTTATAGCATTGACAGCTTTATGGATTAACTGCAGAAACCAGAACAAAAAACattgtagcagcagcagcattcaACCCCTAACAGGATTTTTTATGTAGTTATTTAAAGTATACAGGGATCCATTCAACTTGAATTAGCTTCTCAAATTTCATACTTTATAAGCTGTTCATGAAGTATCAAATCAAAAGATAAGGTATTGTGATTGTTCTGctcttattatattaaaatttaattaaatctgaattaatttttatttaaatagaaattaattcagtgagtaatgtcaaaattatttttttacctttaccttTTACAAAATATGAACACGGTATTCACTCAGCTAAATCTCCCACAGTGAGATATTTTACTGCCTGCCAACAAAAAACATCACCTTTTAAAACACAGTATGCAAACATgaccaaatacattttaataaaataatttccaaGGTAATACATCTAAGAAATCTTCTAACACTCATtatattctattaatattttttttactcattaatACTCATTCATACCTTTTAAGACCATTTACCTCTATGACGTATAAACCTGCAACTCTTCTTAATCTACTTATTTTACTCTGCAGGGAAAAAGACTAGTGAGGTGTACAGTTCAGTTTAATTGGTTACAAATGTGTCCCTGCAGACCATCCTAAccatattactatattactataccTTTATATAAGCAAATTCTCCTCCAACATTGACACCTATGATGACACATCCgattttaatgataattttacCATTTCATCTTAGTTCCTTTCTGTCACTGAACTCCAGGACCTCCTAATTCCAGTAATAGTCTAGACATGAAACAGCTGTTCTAACAGTTAGCGCACTTTTCTCTGGAATATCCAGGCTGAATTATTTAAACATCACATAGGCTACAGCAACTGGCAAGGAAATATTTCAGCATTTCATAGGGAAAGCTTACTTCAGTGACAGTAATTATACAGTAAAGCGGTTAGAGACATGCAATATGGAAAAAGGCAGCTAAGGATTTAAACTTATGGTGCTTAAGCTTTTAAATATTCCTATGTTGTGGCTGCTTTGGGCGTGAGTCTAGACCAGAAATCTCGAACAGGACCATTTAACGGATTGACACACTTTTTATGTGAAGTTTCTTGAtcataaactgtaaaataaatgcattacatGGAGcaataaa
>XM_007228254.2
TCTGTGTAAAAACGGCGCTTTGCCTCAGTGTTTGTCTGTCCTCTCGCTGGTTAATTAGCTTCGTGTGAAGTCACGGCTCACAAACAGCCTCAACAACTCGCTCGCGCTCTGTGGATGTTCCGTCATGGCAGTGACGTCAGGGCTGGACAGATTGAACATGTCATGCTTAGTATAAAAGGCAGCTCCTATTACACGGTGTTATGATTTCTCTTCTGAGGCACTTTCTGCGTGATAAGAGAAGAAGACCGTGGTCATGATGCCTTTCACTCTGTTAATAATGATCCTCATAGCTTTCCCAGTGTCTTCCAATGGTGGAAAGTGGGGATACAATGGGCCTAATGGAGAGCACCACTGGCCCAAGCACTTTCCATACTGTGGTGGGGCATTCCAGTCTCCAGTAAACTTCCAGCCAGAGTTGCTAAGGTATGATCCGAACCTGTTCGCCATCCAGCTTCAGAACTACAACCTGTCCAGCAGGGAGCAGCTCACTTTAAGCAACAATGGACACTCAGTGCAGCTGTCTTTACCATCCTATATGCAGCTGACTGGCCTGCCCCATCGCTATTCAGCAGCTCAGCTTCACTTCCACTGGGGCACCCAAAATGTGCAGGCTGGCTCTGAACACACGGTTAATGGCAAGCAGTTTGCAGCTGAGATGCATGTGGTACATTTCAACTCTGGCAAGTATCCCAACATCTCCATGGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTAGGAGTTTTCATTGAGGTTGGCGAGTTCAATCCTGCTTTTGAGAAGTTCTTTAAGTATGTCAATGGCATAAAATATAGAGACCAGAAAGTGCAAGTGCCAGCATTCAACATCCGGGAACTGCTGCCTTCTCGTTTGGATGAATATTACCGTTATGATGGCTCTCTCACCACACCACCCTGCTTCCCAAGTGTGCTGTGGACAGTGTTCAGACAGCCTGTCACCATCTCACTCAGACAGTACCTGGCACTGGCCACTGCTCTGTACTCTTCGCATGCTCAAGAGGTGGCCCCGATGCCCATGCTTGGCAACTACCGTAAGCCACAGCTAATGGACAACAGAGTGGTGTTGGTGTCCTTCCAGGATGGTGACTTCACTTGGATGAGCTGGGGTTCTCTGATCTCAATAGTGATGGCCTCTGGATTGGGGCTGCTGTTGTTCATTGCATTCTGTTGGTGTCTTTTGAGGAAAAGGTCAGAGGCTGACCAAGAGAAGTTTGGCGCTGATGGATTCCACCCCTCCGAGAGACAGGAAAAGATCTCAAGAGTGTAATCCTGTCCTTCCTTCCCCACATCTGAAGACCTGTGCAGTGAAGCATCCTCAAAATTAGGCCTTTAAACGTACATGTGGAGCCGAATCTGCGAGAAGGACGGCATAAATCTTTCATGTTTGTGTTCCTGAACTGGACTCAAGGGTTCAGTGTTCAGGGTTGACTGGTGGTTTGCGAGTTCATGTAGATCAGAGGGGagaagtgttttaaatgagtgtcCTCACTAGGCCGAATTGGTTCCCTCCAGCCACATTTCAGTATGGACTGTGTTTATTTTCGATTGAAGTCATCAGAACCTAGGTAACTTGCTTGATTCTGAATGGAGAGGGaatggaaaaatgtttatttcacacAATATACGTGTATTTCCTTCAGCTTGATCCGAAGGCGGCCAATGTCAAAACCACCGCTTCCTGCATTTACTACCAGTGTCCATCACATGCCGAGAGTTCTCAACCACTGCAAGAGGGCAGTGCTTCTCAGACACATACCGACAGACAGTGCCGAGCATAGGGGTCAGTTTGGGATGCCCTTCCTCTGTGGTTTACCCAGACCATGACATCTGTGTCTCTTCATCCAGACAGACGTGGTGAAAAGCACAGCCAGTGTCCAAGCAGAGAGAGCACATTACGGTTCTCCACTGATCCAGGGTGGCCTGAGACGGGTAGTTAGGACGACGGTTCCACCCTGTATTTACTATTGTGCAGCTCCGTCGATTAGAATAATGAGAGGGCTTCATGCAAATGGAACACAATTCATTCCCACTGAACGTGGTACAGAAATGGCCCATTGTTCTTGGCCTGCATGTGGGTTGACCTTCCAACCTGCTCCCCCCAACCAATCATGAGGCAAACTCCCATGCACTCCCATTGATCTTTCCAAGCAGAATGCACCttcagtgtatagtgtaagcCAGTGCTGCTAAAAGGTCCATTGCAAAATAAGTCGTACAAAATAGAGCTGTGAAAATGATACTGCTGGAATGTTGCAACACATTCATATGCTTATCGGTTATATTTTGCAGTAATACTTTAGAATTTTACTTTACAGATTATTTAAAGTTGAATCTACTGTAGCACTGCTCGTGGTGGATTGTGGTTTATTTTGTCATGCATGTTGCAAAACTACGTATTTTACTTGTGCGAGAGTGTAAACTCTCATTATGTAGATTATGTAACCATATATTAGGTACAATATGCCAGTGGATGAGTGTCTTAAAAAAGTGGCTTGGATGGCATCTTGAAGATCTTGAAATCTTCTGAAGATACTGAGCACTGAAGAAAGGAGAGATGGATTATATATTTGTGAATACATTAATTTACTAACATCGGATAGGGAAGTAAATGaatattgtaaacaaaaaagtcaacTTATGGTaagcaaacaaataataataatctatattATAA

Function

symbol description
ca12 Predicted to enable carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in muscle. Human ortholog(s) of this gene implicated in isolated hyperchlorhidrosis. Orthologous to human CA12 (carbonic anhydrase 12).

NR:

description
carbonic anhydrase 12 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228253.3 True 3777 mRNA 0.42 9 16063769 16085634
XM_007228254.2 False 2692 mRNA 0.46 11 16055056 16085626

Neighbor

gene id symbol gene type direction distance location
man2c1 man2c1,LOC107682572 coding downstream 3479 16040065 ~ 16051577 (-)
sema7a NA coding downstream 28155 16014365 ~ 16026901 (-)
islr2 islr2,LOC107662462 coding downstream 70938 15979981 ~ 15984118 (-)
ccdc33 ccdc33 coding downstream 198395 15839686 ~ 15856661 (-)
ano5 ano5 coding downstream 344450 15666349 ~ 15710606 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding upstream 171704 16257338 ~ 16313325 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 232250 16317884 ~ 16350164 (-)
cib2 cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243 coding upstream 298915 16384549 ~ 16414345 (-)
acsbg1 NA coding upstream 361862 16447496 ~ 16457754 (-)
LOC103042575 LOC108433637 coding upstream 404013 16489647 ~ 16528087 (-)
LOC111193099 NA non-coding downstream 101243 15853302 ~ 15953813 (-)
G73910 NA non-coding downstream 410804 15643821 ~ 15644252 (-)
G73877 svip non-coding downstream 477558 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 526594 15448674 ~ 15528462 (-)
G74091 usp3,LOC107659494 non-coding upstream 17982 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 116890 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 133462 16219096 ~ 16222273 (-)
G74203 NA non-coding upstream 166858 16252492 ~ 16252752 (-)
G74205 NA non-coding upstream 200594 16286228 ~ 16292019 (-)
LOC103046265 pkp3 other downstream 274378 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 640443 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 840772 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1257773 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1509520 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 381455 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1791392 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1897113 17982747 ~ 18029747 (-)
G74791 NA other upstream 2853540 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2907034 18992668 ~ 19008366 (-)

Expression


Co-expression Network