usp3 (usp3,LOC107659494)


Basic Information

Item Value
gene id usp3
gene name usp3,LOC107659494
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16095209 ~ 16108728 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228256.3
gtttaagcttctgaaggacGGGTTTTAGAgtgactttgggctggatatttcagttggacctggcaaccctacCTCCAGAGCCGCTCTGCTACAGAGAGCAGCACCCAGCGGTCAGGCCGAGTACCCTGTGGCCCGAGTCTGTGTGATTTTACCATATTAATGAGCCGCAGCGATTCCGGTTAAACGGTGGCGTTCGGGGCTGTGTTTCTGATAATGCTGCAGCTGATCAACAGACCCGCCAGTAACGAGCTAACTTACGCGATACCTGACCTGTAGTGTTAGCacaactagctaacctagcttagctgCGTTACTCTCGACTTTTAACTGTCTACATTTGGAAGCTAAAAcatttaactagttaactaaagTTATCAGTCGGGAGGTCTCTGTATTATAGCTAAGCTTTCTTAATTAGGTTAACCTGTGCTGGTGTGTTTGAGTGCGGTGAAGAAGCTAACTGGGTTAGCTAGGCTAACGGCGCTGTCTCTGATGGAGTGTCCTCACCTCGGCTCCAGCGTGTGTGTGGCGGTGGATCCGGCGCGGCTCCCCAGCGGATCCCCCTCTTCATGGTGCTGCAGCGTTTGCCGGTCAAACAAAAGTCCCTGGGTTTGCCTTACCTGCCTGAATGTGCACTGTGGAAGGTATGTCAATGGCCATGCAAAGAAGCATTTTGAAGACATTCAGAGTCCAGTAAGTGGTCAAAAGAAGCCAGAGAAGGAGAGGATACAGCAGCATTCTGTGTGTATGGATTGCAGCAGTTACAGCACATTTTGTTACAGATGTGATGACTTTGTGGTGAATGACACCAAACTGGGTCAAGTGCAGCGGGTGAGGGAGCATCTTCAGAGTTTAGAAAACTCTGTGTTGAATGCCGACAgaccaagaaaaagaaaactctCAGGTAGCTCCTCTCCTGACAAGGTTCCGGAGGATGGTCATGGCTCTCAAGCACAGGGTGCCACTGGCCTGCGCAATTTGGGCAACACATGTTTTATGAACGCCATCCTCCAGTCCCTCAGGAACATTCCAGAATTCAGTTGCTACTTTAAAGATCTGCCAGCAGTGGCACTGCGAAGCGGGAAAACTGCCGGAAGAAGAATGTACCACACCAGAAGCCAGGGGGACACCAGTGTGTCCCTGGTAGAAGAGCTCAGGAAAACCCTCTGTTCCCTTTGGCAAGGGAACCAGACTGCCTTTAGCCCAGATGCTCTGTTCTATGTCATCTGGAAAATAATGCCAAGTTTCAGGGGATACCAGCAACAGGACGCTCATGAGTTTTTGCGTTACCTGCTGGACCACCTCCACAGAGAGATGCAGGGCAGTAAGAATGGACTACCTGGTCCCAGTTTGCTTTCTGACAGGCCAAACCCTACCTCAGAAGGCAAATGCTGTATCAATGGGACCCCCACAGTGGTCACCTCAGTGTTCAGTGGTGTGCTGCAGAATGAAGTCAACTGTTTGATATGTGGCACAGAGTCAAGGAAGTTTGACCCATTTTTAGATCTGTCATTGGACATTCCCAGCCAGTTTCGAGTAAAACGGACTAAGGACCAAGAGCCGGGGCCAACCTGCAACTTGTACCACTGCCTTTTAAGTTTCACTGACCTGGAGGAGCTTGATGAAACGGAGCTCTACATGTGCCATAAGTGTAAAAAGAGACAAAAGTCCACCAAGAAATTCTGGGTTCAGAAGCTGCCCAAGgtgCTGTGTTTACACCTCAAAAGGTTTCACTGGACAGCCTTTTTAAGGAATAAGGTTGATACCTATGTGGAGTTCCCATTGCGAGGCCTTGATATGAAGCGATTTTTATTGGAGCCTGAAAACAGTCTGCCTGAGAGCGGCCTGTATAACCTTGCTGCAGTAGTGGTGCATCATGGATCTGGTGTGGGATCAGGTCATTACACAGCATATGGCCTCCACGAAGGCCGCTGGTATCACTTCAATGACAGCACTGTGACTCTGGTCAGTGAGGAGACTGTGACCAAAGCGAAGGCCTATATTCTCTTCTACACAGAGCAGGCAAAGCAGGACAGTACACCCTCAGAGACCGAGCCTAAGCTTTAATCAGCCTTACTGATACCAAGAAGCCTTCAGAATGATAGCCCACCACTTGCGCACACTGTTTCTCACTCAGCTTCAGTCGTCATTTCACCCATACCAACAACAGAAGAAACCTCAGTAAAATCAAATTGCTGCTGTGTTGATTCTTATCTTTTAAAGAAACATTCCTGTTGCGTTTGTTCAGAGTCCAAAGGTAATTGTTGTATTTATGGAGAATGCTTTCTTCTTGTTGAAAGTGGGTCATGTAGATTGACAGAGCCAAggactttttttaaatgctggaaaaaaagaaaaaaaaaatgaaattatatttttacagcTTTGGACTCTCCTAACTAATACACCAATCAAGTCTCTCTGTCAAGCACTGGACTCCTGACAAATTAACCAGGTGAATATGTTTGCACAGAAAGAAAATATAAGTATTTGTTTAGCTTTTTTGATTATGTTTCCCATATGTATATTCCTGCTGTTTGTTGGTATTCAAAAACTTGAAATAGATTCCAATTAGCTTTTTcgtgttttgttatttttctcgTTTTTTAATGGAACACATGTAGTTTACTCTTACACACCACCACCTCATAAATGTGaaaatgacttttaaaataAGGCACAACAAGCCTATGAAATGTTATCCATGCTTAgacatgttttgtttatttatactgttttaatgaGACTAAATTTAGCCCATTGTTTTAAACCAGATGCTACCATAATGTCATGAGAGCTCATCATTTCATGCTGTCACTTACAGAGGAAGTAAAGAAATGCCAGTTAATGGAAA

Function

symbol description
usp3 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human USP3 (ubiquitin specific peptidase 3).

NR:

description
ubiquitin carboxyl-terminal hydrolase 3

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11986 USP3; ubiquitin carboxyl-terminal hydrolase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228256.3 True 2854 mRNA 0.45 15 16095209 16108728

Neighbor

gene id symbol gene type direction distance location
LOC103024759 NA coding upstream 1593 16088865 ~ 16093616 (+)
neil1 NA coding upstream 55159 16032374 ~ 16040050 (+)
LOC103023069 commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913 coding upstream 63771 16027462 ~ 16031438 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding upstream 116106 15951937 ~ 15979103 (+)
LOC103021835 cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280 coding upstream 255362 15831457 ~ 15839847 (+)
fbxl22 fbxl22 coding downstream 12941 16121669 ~ 16133261 (+)
LOC103025905 LOC108433646 coding downstream 102872 16211600 ~ 16222093 (+)
sh2d7 LOC103027007 coding downstream 251201 16359929 ~ 16369370 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843,LOC107757768 coding downstream 306963 16415691 ~ 16428455 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding downstream 321440 16430168 ~ 16446786 (+)
G73990 man2c1,LOC107752311 non-coding upstream 43666 16050709 ~ 16051543 (+)
G73975 NA non-coding upstream 101373 15993169 ~ 15993836 (+)
G73970 NA non-coding upstream 198687 15895719 ~ 15896522 (+)
G73941 pkp3,LOC107589311 non-coding upstream 330084 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 425440 15666348 ~ 15669769 (+)
LOC103025699 NA non-coding downstream 25756 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 177530 16286258 ~ 16291939 (+)
G74182 NA non-coding downstream 264900 16373628 ~ 16373843 (+)
G74191 acsbg1 non-coding downstream 338552 16447280 ~ 16450389 (+)
G74192 NA non-coding downstream 342790 16451518 ~ 16452533 (+)
svip svip other upstream 517676 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 1174206 14891534 ~ 14921003 (+)
G73533 NA other upstream 1445658 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 3197278 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5468245 10272919 ~ 10626964 (+)
G74169 NA other downstream 177948 16286676 ~ 16288329 (+)
G74649 NA other downstream 2346123 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2361976 18470704 ~ 18479345 (+)
G74832 NA other downstream 2974088 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3031421 19140149 ~ 19322775 (+)

Expression


Co-expression Network