cib2 (cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243)


Basic Information

Item Value
gene id cib2
gene name cib2,LOC103027299,LOC107573330,LOC107752320,LOC101476243
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16384549 ~ 16414345 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228263.3
GAAATGCTTCtgatttcagtttagaaacaaaataatactatacagactgacactttaaatgccatttaaccAAACTCTGCTGCTCAACTCAGACACTGATCACTCAGCACTTGCGCCCCCTCGTGGCCCCcggtggtctctctctctctcctgcagttTCAGCTCTGAGGACCAGCAGCGCCGCGGGCTGTGGACAGCAGTGAGTGCTGAAACAGGAGTGTGTGAGCGGCTGTTCGGCTATTGTGCTATTCATGAAGCTCTACACTTGAGTCgcggagggatcgtcgatcacGTTGCACTCAAGTATTTATGGAGAGTGTGATCTGCATTACAAAACATCCATAAGTAAGTCGGGGGTCTGTAATTCTATGCGTGGTCACAGTTTTCTCGTCTGGCCGCACCGTATACATGCCATAAATGCCTAGGAAAGAGAGGAGTCCTCGAACTTCCAATGTGATGCATCTGTACGAGAGGAAAAACACTGGACTAAGATGGGGAATAAGCAAACGATATTTACTGATGAACAGCTAGACGCCTATCAGGACTGCACATTCTTCACACGCAAGGAAATCCTTCGgttACATGGAAGATTCCATGAACTGGCCCCACATTTAGTTCCCATGGACTACACAGACGACCCTGACGTTAAAATCCCTTTAGCCCTAATAGTCAACATGCCGGAACTGAAGGAAAACCCATTCCGGAACAGGATTGTGGAGTCCTTCTCTGAGGACGGCCTGGGGAACCTCAGCTTCAACGATTTCGTGGACATGTTTTCAGTCCTGAGCGAGATGGCCCCTAGAGAGCTAAAGGCCATTTATGCTTTCAAAATATATGATTTCAATGTGGATAATTACCTCTGCAAGGAGGACCTTGAGAAGACTCTGAACAAGCTAACAAAGGAGGAGCTGACTCCAGAGGAGGTGAACTTGGTGTGCGAGAAGGCTATCGAGGAGGCTGACCTGGATGGAGACAGCAAGCTCTCCTTCGCTGACTTTGAAAACATGATCTCCAGGGCTCCTGACTTTTTAAGCACCTTCCATATACGAATCTAAGAGGGCTTTCTACTTCACGATGGATTACTCGGTTGAGCTTCTTTGGAGTTCCTGACTGCAACTTGAAAACCTTGGAAACATAGCAACTATGGGAACATAGCAGTGCCTGTCCTCAACAGCTCTGAAGAGTTTTCAAACAGCCCTCATTTACCGGGGAAGCAGGATTTTGGATCTCTTTGGCTCTGTgataaactttgttttttttctatcttgTTGTTCTGGGGAAGCACATTTGATCTAAAGGAGTATGGTGACAAAATGCATGACTTTTTCCAGCCGGAGAACTTGGACCACCACTGGGGCTAGATTTTAGAATGAAGGTGAAAAGCACCTGGAGTTTAAGGATCTGTGTGGTTTTTGAGGTACACTAGAATGTGGACTGCTCTTACGGTCTTGTTCTTCTACGTTTGTCAGTCTTATGATGTGTTTGACACCACTAGACACATTCCAGACAGACTCTCCTCCTGAACTCTCCACTCTGTATCTTGGAATAAGAAACATGCAGTGTAGAGATGGACAGTGGTGGACGGAGGACAGAAGATGGACATGGTGTAGAGATGTACAGAGGATGGAGAATGCGACAAAGAGGGCTAAAAGCACAGCACTGGCATCACAGACAGTCTTTTATACAGCTATGCAATCTTTCTTCATGAAATGCATGAGTTGCATTAAGTTGGCTTCCTGCTATAAATTGCTTTTGGTGTATCTCTTATAGCGTATAGGACTGGAGCATGACGACAATCATATCAAACTGTTCTCCAGTTGAACAAAGGGCTCTGCCACCTTGTCTTATATTCAGCTATTCCCAATCTGTTTCTGTTGTGCTCTTATTTCTCCTCCTCCTGTATGAACGTGACACGTGAGAGCTTCACCTGTCGTAACCTTCAGACTTTTTTCCAGTATTTGATGTCATAGAGGGCATTCAACTTAactttgaataaataattttctgTG
>XM_022672198.1
GAAATGCTTCtgatttcagtttagaaacaaaataatactatacagactgacactttaaatgccatttaaccAAACTCTGCTGCTCAACTCAGACACTGATCACTCAGCACTTGCGCCCCCTCGTGGCCCCcggtggtctctctctctctcctgcagttTCAGCTCTGAGGACCAGCAGCGCCGCGGGCTGTGGACAGCAGTGAGTGCTGAAACAGGAGTGTGTGAGCGGCTGTTCGGCTATTGTGCTATTCATGAAGCTCTACACTTGAGTCgcggagggatcgtcgatcacGTTGCACTCAAGTATTTATGGAGAGTGTGATCTGCATTACAAAACATCCATAAGAAAGAGAGGAGTCCTCGAACTTCCAATGTGATGCATCTGTACGAGAGGAAAAACACTGGACTAAGATGGGGAATAAGCAAACGATATTTACTGATGAACAGCTAGACGCCTATCAGGACTGCACATTCTTCACACGCAAGGAAATCCTTCGgttACATGGAAGATTCCATGAACTGGCCCCACATTTAGTTCCCATGGACTACACAGACGACCCTGACGTTAAAATCCCTTTAGCCCTAATAGTCAACATGCCGGAACTGAAGGAAAACCCATTCCGGAACAGGATTGTGGAGTCCTTCTCTGAGGACGGCCTGGGGAACCTCAGCTTCAACGATTTCGTGGACATGTTTTCAGTCCTGAGCGAGATGGCCCCTAGAGAGCTAAAGGCCATTTATGCTTTCAAAATATATGATTTCAATGTGGATAATTACCTCTGCAAGGAGGACCTTGAGAAGACTCTGAACAAGCTAACAAAGGAGGAGCTGACTCCAGAGGAGGTGAACTTGGTGTGCGAGAAGGCTATCGAGGAGGCTGACCTGGATGGAGACAGCAAGCTCTCCTTCGCTGACTTTGAAAACATGATCTCCAGGGCTCCTGACTTTTTAAGCACCTTCCATATACGAATCTAAGAGGGCTTTCTACTTCACGATGGATTACTCGGTTGAGCTTCTTTGGAGTTCCTGACTGCAACTTGAAAACCTTGGAAACATAGCAACTATGGGAACATAGCAGTGCCTGTCCTCAACAGCTCTGAAGAGTTTTCAAACAGCCCTCATTTACCGGGGAAGCAGGATTTTGGATCTCTTTGGCTCTGTgataaactttgttttttttctatcttgTTGTTCTGGGGAAGCACATTTGATCTAAAGGAGTATGGTGACAAAATGCATGACTTTTTCCAGCCGGAGAACTTGGACCACCACTGGGGCTAGATTTTAGAATGAAGGTGAAAAGCACCTGGAGTTTAAGGATCTGTGTGGTTTTTGAGGTACACTAGAATGTGGACTGCTCTTACGGTCTTGTTCTTCTACGTTTGTCAGTCTTATGATGTGTTTGACACCACTAGACACATTCCAGACAGACTCTCCTCCTGAACTCTCCACTCTGTATCTTGGAATAAGAAACATGCAGTGTAGAGATGGACAGTGGTGGACGGAGGACAGAAGATGGACATGGTGTAGAGATGTACAGAGGATGGAGAATGCGACAAAGAGGGCTAAAAGCACAGCACTGGCATCACAGACAGTCTTTTATACAGCTATGCAATCTTTCTTCATGAAATGCATGAGTTGCATTAAGTTGGCTTCCTGCTATAAATTGCTTTTGGTGTATCTCTTATAGCGTATAGGACTGGAGCATGACGACAATCATATCAAACTGTTCTCCAGTTGAACAAAGGGCTCTGCCACCTTGTCTTATATTCAGCTATTCCCAATCTGTTTCTGTTGTGCTCTTATTTCTCCTCCTCCTGTATGAACGTGACACGTGAGAGCTTCACCTGTCGTAACCTTCAGACTTTTTTCCAGTATTTGATGTCATAGAGGGCATTCAACTTAactttgaataaataattttctgTG

Function

symbol description
cib2 Predicted to enable calcium ion binding activity. Acts upstream of or within camera-type eye development; mechanosensory behavior; and neuromast development. Is expressed in central nervous system and cranial ganglion. Human ortholog(s) of this gene implicated in Usher syndrome type 1J and autosomal recessive nonsyndromic deafness 48. Orthologous to human CIB2 (calcium and integrin binding family member 2).

NR:

description
calcium and integrin-binding family member 2-like isoform X1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0048884 neuromast development biological_process
GO:0007638 mechanosensory behavior biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23837 CIB2; calcium and integrin-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228263.3 True 2009 mRNA 0.45 6 16384549 16414345
XM_022672198.1 False 1929 mRNA 0.45 7 16384549 16414345

Neighbor

gene id symbol gene type direction distance location
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 34385 16317884 ~ 16350164 (-)
dapk2 dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496,LOC107573357 coding downstream 71224 16257338 ~ 16313325 (-)
ca12 ca12 coding downstream 298915 16055056 ~ 16085634 (-)
man2c1 man2c1,LOC107682572 coding downstream 332972 16040065 ~ 16051577 (-)
sema7a NA coding downstream 357648 16014365 ~ 16026901 (-)
acsbg1 NA coding upstream 33151 16447496 ~ 16457754 (-)
LOC103042575 LOC108433637 coding upstream 75302 16489647 ~ 16528087 (-)
otud7a otud7a,si:dkey-37f18.2,LOC107715690,LOC107752330,LOC107659507,LOC107550219,LOC107698115,LOC107598848,LOC108275340 coding upstream 203806 16618151 ~ 16738665 (-)
bnip2 bnip2,LOC107703138 coding upstream 400571 16814916 ~ 16829981 (-)
LOC103044821 anxa2,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215 coding upstream 544229 16958574 ~ 16965560 (-)
G74211 NA non-coding downstream 62896 16316945 ~ 16321653 (-)
G74205 NA non-coding downstream 92530 16286228 ~ 16292019 (-)
G74203 NA non-coding downstream 131797 16252492 ~ 16252752 (-)
G74202 LOC108433646 non-coding downstream 162276 16219096 ~ 16222273 (-)
G74199 NA non-coding downstream 169024 16202524 ~ 16215525 (-)
G74265 NA non-coding upstream 93659 16508004 ~ 16508462 (-)
G74285 NA non-coding upstream 226497 16640842 ~ 16641656 (-)
G74286 NA non-coding upstream 245158 16659503 ~ 16690357 (-)
G74295 NA non-coding upstream 328715 16743060 ~ 16747522 (-)
G74306 NA non-coding upstream 356097 16770442 ~ 16786039 (-)
LOC103046265 pkp3 other downstream 603871 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 969936 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 1170265 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 1587266 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1839013 14542196 ~ 14545536 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 52744 16467089 ~ 16470323 (-)
nrg4 NA other upstream 1462681 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 1568402 17982747 ~ 18029747 (-)
G74791 NA other upstream 2524829 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 2578323 18992668 ~ 19008366 (-)

Expression


Co-expression Network