LOC103038359


Basic Information

Item Value
gene id LOC103038359
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11049697 ~ 11084679 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228295.3
CAGATGAAAAGCCACCTGTCTGACTGGAGAGAGGGCTTTCTCAGTCACTCGCTCTGCTGATGGTCTCAGCTGGCATTATGCTGGATCTAATCTGGCCTGTGACCAGAAGTATTTGTTGGATTATAGGAGCGAGAGGTTGAAGGATTTGAGGAGCGGTTGAGGCTTTCCTTACAATAAGACCAGATTGGAGCTGTTGGACTTTTATCATGTGGAGCAGAGCAGATTGGATATTTGGGGGATTTTAGATGACAAAGGGGAGCTGATGAAGATTCTGAGATGAAGAAAGATATCGAGTTATTAATAGCTGAAGAACGGGCTGAAATCATCTCAAAATATGACAAGGGCAGAACGGAGGACGCGCACATTAACCCTTGGGAAGATGCCAACTACAGCCTTTACAAGGTCATGGACCGCTTCGGCTTCCTGCATGAGAAGGAGTTGCCCACTCCAAGTGCAGTGGAGGAAAAGCATAAGCTTCAGGAGATTGAGAGAGCGGAGAAGTGGCTTAAGATGGTGAAGAAATGGGACCAAAAGTACCATAACAGTGAAAAGATGATGAAGCGTGTGTATAAGGGGATTCCCCTGCAGCTGCGGGGCCAGGCTTGGGCTCTTCTGCTGGAAGTGGAGAAGGTAAAGGAGCAGAATCAGGGGAAGTATGAGGCAATGAAGAAACAAGCCAGACTCCACTCAACAGAGATCAAACAGATAGACCTGGATGTCAACAGGACTTTTAGAAATCATGTAATGTTCATGGAAAGATTTGGAGTCAAgcaAAAAGCTCTGTTTGATGTGCTGACAGCCTACTCTGTCTACAACAAGGAGGTCAGCTACTGCCAGGGCATGAGCCAGATTGCAGCCATTTTGCTAATGTATCTGAATGAGGAGGACGCATTTTGGGCCCTGTCTCAGCTCCTTACCAACCAGAAGCATGCTATGCACGGATTCTTCATCCCTGGCTTTCCCAAGCTACAGAGGTTCCAGGCTCACCATGACCAAATCCTGGCTAAACTCCTTCCAAAGCTCAAGAGGCACATGGATAAGGAGCAGATGACCACGGGTATATACACAACCAAATGGTTCCTGCAGTGTTTCATTGACAGAaCACCTTTCACCTTGACCCTGCGTCTGTGGGACATATACATCCTGGAAGGAGAGAGGATTCTGACTGCTATGGCCTACACTGCCCTAAGAATTCACAAAAagCGTCTGCTGAAGATGTCTTTGGAGGATCTGCGGGAGTTTCTGCAGGAGAgcatctcctcctccttccaCCAAAATGACGATACCGTCATAGAGCAGCTGCAGGCCGCCATGGCTGATCTACGCAAAATGAAGCTGGATCTTCCTCCTCCATCAAAAGGTGATGAGTTGCCGAAGATGCCTCTGGGTGTGGAGGATCCAGAGGATGTTGTATTAACTCCAGTGAAGCCTAAGCAGGATGCGCTCCCTCAGCCAGCCAACCCTCGCTTACCGGAGCCCGTCACCCAGAATCAGaccccctccatccctccagtCTGCCCAGTAATACCATACAGCCAGGCAAATGGTCCAGTACCTCTAATCACAACCTCATATCCACAGCCTGGGTCTGCAGGATCAGAGACTAGAGTCCACAGCCGGAGTGGAGCTGCTGAGAAGAGGCTGGCTTTCCCCTCAGCAGGCGCCACTCTCTCGCCAGACAGTGCTTTTAAAAGACCACCTTCAGTTGACTCCATTCTGCAGGGGGATGCGGGTGACTGGCCACCTCCGTACCAACCTTCTGAGACTGATGTCGCCAGTGTTCACTCTCTAAACTTTCCTGAACTGCCCCCTCCACCTCTACCAGAGGCTGGAGTGGAGCTTTTACCCCTGGAGGACGCCACATTAccgccaccaccaccagcagcatcACTGACTCATCCTTTGGATCCCTGTTCCTCACCATCTTCATACAGAGCCCAGCGGCAGCTCAGCAAGTTCCCCGTCAACTTGTACGTACCCCCTTCCACAAGCGACCGGCGGCCCTCCAACACCTCTCATTACGATAACCTGTCCGAGGAGGAGGAGTCCGTGGAGAGGTTGCTGGAAATTGCAGCTACTCTTCCTCCAAGCCCAGAAACAGGTCGAGGAATCTCCAGCCTCCCCACGCTGCCAGAGGACAGTGCCACCCACCATTGGCCCCAACCACCAGGGTTCTTTTACATCCCTGACTCTgttccacctcctccacctcagCCATACCTCAGTGCATTGCCCCCATTGCCTCAGGAGCAGGACTACCAGGGGCCAGACAGTTGGGTGACTTCAGACTGCGTCCTCCCAAAGCCTCCCCCCGACTTTGCAGACACACCCTCCCCAGTCCCCTCCCCCATGATTTCCTTCAGATCCCACCAGGCAAATCAGAATCAGAAGGACACCTACAGGAACCAGCTACGATCTCCCAAGGTCCCAGtaaaaccaccaccaccagcagctcCATCCCCTACACCACCTCCGGTGTGGCCTGACTCGAGCCTTAACCGGATGCATGTCCCAAACCGCCAGCTGCCAAAGCCAGTGGACCTTCTAACACAGGAAACGTTTGCGGCCTTTGGTGctgctgcaataaaaaaaaaataaaagtcatgtTCGGTCTCTCTGATGTTCAGAACTTTCCAAATGTCAAGCCATCCTGTTAcgttctctcttcttttttcctctcaaaCTGTTGTGATttgtacagcttttttttttacccgtTAAGATTTGATTTTGTTCCTTTTATGGTGGAATTATGTCTAATGTAGCATATTTTTGCCACATTAATGGTGCTTCTATGTGTAATTGTTGTGTGTTTACAGCCACTCAGCAGAAAAGCACTGTTGTTGAGCTTAGATCCGTTTGGCTTGTACCCGTTTTGTGCCTTTTAAGCTGTTTGCTTTGTACAGATATCTATGTAAGACTTAAGACTTTGAAAAAACTCCAAAAATATTTCTAATTTGTACAGGACACCAAAAAGGtcaattacagttttaaaattttCCAAATCTTATTTGCTCTTCCGAAACTCCAGCCAATTAGCATGTTATGCAAAGGAGTCAGACGTATGCATGCTTTCACTCATTCTATAATTTCCTCATCTATAATATGCAGTGTTTTGAGttgtgaaaatgtgtttgaaTGTGTTTAAGTGTGAGTGATGTGATTTGGTTTAtgcagctttgtttttttttgttgttttttatcttCTGCTCACTTTAAAACATGTCCTGTAAAGCTTTACGTACAAATGGCAATTTAATTGTAACAAAAAGAAAGCTTTTTGTCTTTTATGTGgctcatagtaaaaaaaaaaaaaggaaaaaatgcttATATCAGAATGAGCACATCCCCAGTGTAAGAGAGTTGGCTCTAGAAGTTTttgagatttgtttttttttctaatgtattttaaaatgctttaggTCAAGGATTTGGAAATGAATCCTCTAGTAGAGGGATCACAATTTAACAATTTGCTGATTTCTAGCTCCACATTGTGGAAGACAATGTGCAATCTTCCATAAAAACCTCAAATGCTTTGCCTGTAAATGTGTGTTCACAGTGAATTTGTACAGAActtaaacagagagaaaaatattgtgaaaaacattgtattattttatttgcacttttttaaactgtatttaagaGCTTTATGTTTTGTGGTGTTCCTCGGGTGCAGCTGCTTTTCCCTTTGAAAGCAGCTTCCAACCTGTTCCAACCCAAAGATGGTCTTTTGTATTTGGTTGTGATGCTGTGATGACACCATTTAAtgccaaaaatgtttaaaagaaaaaaatgtggtggttttttttcacacagtgtTTTATTGAACATTTACATTATTG
>XM_015600899.2
acacacacacacacactctctgtcgGACTCTCTCAGCTCTATCCGCTCACATGGAGCCGAGCTGTGTGgacgctgctgctgttgttggcGGACGCCTCGCCTTCTCTCTGGCCGTGAACGAGAGGAAACTATGAGAAACGCCgtgtgtttatctgtctgtggAGCCGGGAAGACCTATCCTAAACGATTCTGAGATGAAGAAAGATATCGAGTTATTAATAGCTGAAGAACGGGCTGAAATCATCTCAAAATATGACAAGGGCAGAACGGAGGACGCGCACATTAACCCTTGGGAAGATGCCAACTACAGCCTTTACAAGGTCATGGACCGCTTCGGCTTCCTGCATGAGAAGGAGTTGCCCACTCCAAGTGCAGTGGAGGAAAAGCATAAGCTTCAGGAGATTGAGAGAGCGGAGAAGTGGCTTAAGATGGTGAAGAAATGGGACCAAAAGTACCATAACAGTGAAAAGATGATGAAGCGTGTGTATAAGGGGATTCCCCTGCAGCTGCGGGGCCAGGCTTGGGCTCTTCTGCTGGAAGTGGAGAAGGTAAAGGAGCAGAATCAGGGGAAGTATGAGGCAATGAAGAAACAAGCCAGACTCCACTCAACAGAGATCAAACAGATAGACCTGGATGTCAACAGGACTTTTAGAAATCATGTAATGTTCATGGAAAGATTTGGAGTCAAgcaAAAAGCTCTGTTTGATGTGCTGACAGCCTACTCTGTCTACAACAAGGAGGTCAGCTACTGCCAGGGCATGAGCCAGATTGCAGCCATTTTGCTAATGTATCTGAATGAGGAGGACGCATTTTGGGCCCTGTCTCAGCTCCTTACCAACCAGAAGCATGCTATGCACGGATTCTTCATCCCTGGCTTTCCCAAGCTACAGAGGTTCCAGGCTCACCATGACCAAATCCTGGCTAAACTCCTTCCAAAGCTCAAGAGGCACATGGATAAGGAGCAGATGACCACGGGTATATACACAACCAAATGGTTCCTGCAGTGTTTCATTGACAGAaCACCTTTCACCTTGACCCTGCGTCTGTGGGACATATACATCCTGGAAGGAGAGAGGATTCTGACTGCTATGGCCTACACTGCCCTAAGAATTCACAAAAagCGTCTGCTGAAGATGTCTTTGGAGGATCTGCGGGAGTTTCTGCAGGAGAgcatctcctcctccttccaCCAAAATGACGATACCGTCATAGAGCAGCTGCAGGCCGCCATGGCTGATCTACGCAAAATGAAGCTGGATCTTCCTCCTCCATCAAAAGGTGATGAGTTGCCGAAGATGCCTCTGGGTGTGGAGGATCCAGAGGATGTTGTATTAACTCCAGTGAAGCCTAAGCAGGATGCGCTCCCTCAGCCAGCCAACCCTCGCTTACCGGAGCCCGTCACCCAGAATCAGaccccctccatccctccagtCTGCCCAGTAATACCATACAGCCAGGCAAATGGTCCAGTACCTCTAATCACAACCTCATATCCACAGCCTGGGTCTGCAGGATCAGAGACTAGAGTCCACAGCCGGAGTGGAGCTGCTGAGAAGAGGCTGGCTTTCCCCTCAGCAGGCGCCACTCTCTCGCCAGACAGTGCTTTTAAAAGACCACCTTCAGTTGACTCCATTCTGCAGGGGGATGCGGGTGACTGGCCACCTCCGTACCAACCTTCTGAGACTGATGTCGCCAGTGTTCACTCTCTAAACTTTCCTGAACTGCCCCCTCCACCTCTACCAGAGGCTGGAGTGGAGCTTTTACCCCTGGAGGACGCCACATTAccgccaccaccaccagcagcatcACTGACTCATCCTTTGGATCCCTGTTCCTCACCATCTTCATACAGAGCCCAGCGGCAGCTCAGCAAGTTCCCCGTCAACTTGTACGTACCCCCTTCCACAAGCGACCGGCGGCCCTCCAACACCTCTCATTACGATAACCTGTCCGAGGAGGAGGAGTCCGTGGAGAGGTTGCTGGAAATTGCAGCTACTCTTCCTCCAAGCCCAGAAACAGGTCGAGGAATCTCCAGCCTCCCCACGCTGCCAGAGGACAGTGCCACCCACCATTGGCCCCAACCACCAGGGTTCTTTTACATCCCTGACTCTgttccacctcctccacctcagCCATACCTCAGTGCATTGCCCCCATTGCCTCAGGAGCAGGACTACCAGGGGCCAGACAGTTGGGTGACTTCAGACTGCGTCCTCCCAAAGCCTCCCCCCGACTTTGCAGACACACCCTCCCCAGTCCCCTCCCCCATGATTTCCTTCAGATCCCACCAGGCAAATCAGAATCAGAAGGACACCTACAGGAACCAGCTACGATCTCCCAAGGTCCCAGtaaaaccaccaccaccagcagctcCATCCCCTACACCACCTCCGGTGTGGCCTGACTCGAGCCTTAACCGGATGCATGTCCCAAACCGCCAGCTGCCAAAGCCAGTGGACCTTCTAACACAGGAAACGTTTGCGGCCTTTGGTGctgctgcaataaaaaaaaaataaaagtcatgtTCGGTCTCTCTGATGTTCAGAACTTTCCAAATGTCAAGCCATCCTGTTAcgttctctcttcttttttcctctcaaaCTGTTGTGATttgtacagcttttttttttacccgtTAAGATTTGATTTTGTTCCTTTTATGGTGGAATTATGTCTAATGTAGCATATTTTTGCCACATTAATGGTGCTTCTATGTGTAATTGTTGTGTGTTTACAGCCACTCAGCAGAAAAGCACTGTTGTTGAGCTTAGATCCGTTTGGCTTGTACCCGTTTTGTGCCTTTTAAGCTGTTTGCTTTGTACAGATATCTATGTAAGACTTAAGACTTTGAAAAAACTCCAAAAATATTTCTAATTTGTACAGGACACCAAAAAGGtcaattacagttttaaaattttCCAAATCTTATTTGCTCTTCCGAAACTCCAGCCAATTAGCATGTTATGCAAAGGAGTCAGACGTATGCATGCTTTCACTCATTCTATAATTTCCTCATCTATAATATGCAGTGTTTTGAGttgtgaaaatgtgtttgaaTGTGTTTAAGTGTGAGTGATGTGATTTGGTTTAtgcagctttgtttttttttgttgttttttatcttCTGCTCACTTTAAAACATGTCCTGTAAAGCTTTACGTACAAATGGCAATTTAATTGTAACAAAAAGAAAGCTTTTTGTCTTTTATGTGgctcatagtaaaaaaaaaaaaaggaaaaaatgcttATATCAGAATGAGCACATCCCCAGTGTAAGAGAGTTGGCTCTAGAAGTTTttgagatttgtttttttttctaatgtattttaaaatgctttaggTCAAGGATTTGGAAATGAATCCTCTAGTAGAGGGATCACAATTTAACAATTTGCTGATTTCTAGCTCCACATTGTGGAAGACAATGTGCAATCTTCCATAAAAACCTCAAATGCTTTGCCTGTAAATGTGTGTTCACAGTGAATTTGTACAGAActtaaacagagagaaaaatattgtgaaaaacattgtattattttatttgcacttttttaaactgtatttaagaGCTTTATGTTTTGTGGTGTTCCTCGGGTGCAGCTGCTTTTCCCTTTGAAAGCAGCTTCCAACCTGTTCCAACCCAAAGATGGTCTTTTGTATTTGGTTGTGATGCTGTGATGACACCATTTAAtgccaaaaatgtttaaaagaaaaaaatgtggtggttttttttcacacagtgtTTTATTGAACATTTACATTATTG

Function

GO: NA

KEGG:

id description
K20133 USP6NL; USP6 N-terminal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228295.3 True 3848 mRNA 0.46 14 11049697 11074392
XM_015600899.2 False 3766 mRNA 0.46 14 11049697 11084679

Neighbor

gene id symbol gene type direction distance location
tmem86a tmem86a,LOC107707555,LOC107709947,LOC107688565 coding downstream 21047 11008621 ~ 11028650 (-)
b4galnt4 b4galnt4,LOC108439245 coding downstream 84515 10725524 ~ 10965182 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding downstream 331713 10630846 ~ 10717984 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding downstream 816500 10223118 ~ 10233197 (-)
lrrc56 NA coding downstream 864851 10166327 ~ 10184846 (-)
kcnj11 kcnj11,LOC107758740 coding upstream 652604 11737283 ~ 11739371 (-)
abcc8 abcc8 coding upstream 655283 11739962 ~ 11804035 (-)
LOC111193095 NA coding upstream 682830 11767509 ~ 11776139 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding upstream 721138 11805817 ~ 11834740 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding upstream 859746 11944425 ~ 11953789 (-)
G72847 NA non-coding downstream 11552 11037508 ~ 11038145 (-)
G72845 spty2d1,LOC107688563 non-coding downstream 14920 11033157 ~ 11034777 (-)
G72807 NA non-coding downstream 419873 10629582 ~ 10629824 (-)
G72806 NA non-coding downstream 420211 10629197 ~ 10629486 (-)
G72803 NA non-coding downstream 422672 10571164 ~ 10627025 (-)
G72881 NA non-coding upstream 146500 11231179 ~ 11231678 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding upstream 609999 11694678 ~ 11733149 (-)
G72974 NA non-coding upstream 649465 11734144 ~ 11734846 (-)
G73030 NA non-coding upstream 1040857 12125536 ~ 12126823 (-)
G73098 NA non-coding upstream 1109894 12194573 ~ 12196578 (-)
LOC103046452 rassf7 other downstream 887213 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 995663 10051952 ~ 10054034 (-)
LOC103042271 LOC108442478,LOC108275244 other downstream 1146804 9856399 ~ 9902893 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other downstream 1225178 9801055 ~ 9824519 (-)
G72453 NA other downstream 1824138 9188399 ~ 9225559 (-)
LOC111193093 NA other upstream 140100 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 436208 11520887 ~ 11545246 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other upstream 963947 12048626 ~ 12051489 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 1464011 12548690 ~ 12564978 (-)
G73172 NA other upstream 1526155 12610834 ~ 12621356 (-)

Expression


Co-expression Network