CI01000009_05538212_05539688


Basic Information

Item Value
gene id CI01000009_05538212_05539688
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5538212 ~ 5539727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60787
TACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATGGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAAGAGAAGTTCTAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCACTTACAATGATCAACTTTTTATCTTTCACATCTCACCTGTGAACTTTAATTATAGTGGGACATACAGGTGTATTCCAAATGATCAAAAGATTCCCTACACAACCACAATGCTACACACCATCAGAGGTTTGCAAATATCAAT
>TU60798
TACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATGGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAAGAGAAGTTCTAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCACTTACAATGATCAACTTTTTATCTTTCACATCTCACCTGTGAACTTTAATTATAGTGGGACATACAGGTGTATTACAAATGATCAAAAGATTCCCTACACAACCACAATTCTACACACCATCAGAGTCTCAGTGGAGCCCCCTGATGGTGTGTTGAGGAATCAGTCAGTGATTCTTACCTGTGAAGTTTCTGAAGTGACTGATTCAGTGACGCTGGTCTGGCTCAGGATGGAGGGGAACAGAGGAGTGCTGGAAAAACAGCAAATTATGACTGAAAACAAGTTACAGCTCACAGTGAATCTATCCAGATATGAAACAGAGCCGCTGCACTGGCAGTGTGCAGTTTTTACTGAGAATAAACTCAGAGCTCTGGCCCCAATAACAATCAGTCTTTCCTCATCAACTACTAATGCTCCAAGTACATCAACAGAAACTCTAACAAATAATATTAATATACAGTATTTTTCACCTTAGAATAAGATTATATATTTTCAGCCTACTAGCAAACAAATAGTGATTTGTCAGTGTGTAGTCATGACACTGGTCAGTGTTGGTGTAATTATCTGTCTCCACATGTTTCTGCAGAAGACATCATGACACAGGACAGTCATCTACAGATGGGGATCGTCGTGGCGTGTGTTGTCACTGGCTGTGTGCTGATTCTGCTGCTGGGACTTCTAGTTTTTAAACGTCAGCGAAAAACAGGTGAGCTGATCTCAGAGACAGTAAAAGAAGGAGAAGATG
>CI01000009_05538212_05539688.mRNA
TTCAGCGTGGCGTTGATGTGTCTTTGCGATGTGAGGTCTCTTTCCTGCCTGAATCCTCAACATTGCAGTGGGAGAAAGACGGACAACAAACATCCAACACCACTCTACTGTACAACAACTCTGCCTACATCATCTTACACACCGTTGATGAAAAGAATGAAGGGAAATATTACTGTAGATTGATGGAAAATGGAAGAGTAAAAACTGTAAGGATTCTTACGCTTACTGTCAGTTCAAATTCATATAATGGAAATAATAATAAAACAATTTACAGACTAAGCTCTAATAATAGTGACGTATCACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATTGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAGGAGAAGTTCAAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCATTTTCAATAGTCAACTTTTTATCTTTCACATCTCACCTTTGAACTTTAATTATAGTGGGACATACAGGTGTATTCCAAATGATCAAAAGATTCCCTACACAACCACAATGCTACACACCATCAGAGAAGACATCATGACACAGGACAGTCATCTACAGATGGGGATCGTCGTGGCGTGTGTTGTCACTGGCTGTGTGCTGATTCTGCTGCTGGGACTTCTAGTTTTTAAACGTCAGCGAAAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60787 False 75 lncRNA 0.39 1 5538980 5539054
TU60798 True 275 lncRNA 0.42 1 5539453 5539727
CI01000009_05538212_05539688.mRNA False 699 mRNA 0.40 3 5538212 5539688

Neighbor

gene id symbol gene type direction distance location
CI01000009_05523743_05526184 NA coding upstream 11963 5523642 ~ 5526249 (+)
CI01000009_05522736_05523662 NA coding upstream 14550 5522736 ~ 5523662 (+)
CI01000009_05502414_05506275 NA coding upstream 31937 5499971 ~ 5506275 (+)
CI01000009_05491807_05498189 TFCP2L1 coding upstream 39413 5491807 ~ 5498799 (+)
CI01000009_05418094_05487944 CLASP1, CLASP1A coding upstream 49711 5417979 ~ 5488501 (+)
CI01000009_05685508_05688628 NA coding downstream 145820 5685508 ~ 5688633 (+)
CI01000009_05696405_05703318 NA coding downstream 155983 5695671 ~ 5703921 (+)
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding downstream 164305 5703993 ~ 5722006 (+)
CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding downstream 221295 5760983 ~ 5768703 (+)
CI01000009_05772094_05781990 NA coding downstream 230935 5770623 ~ 5782227 (+)
G53383 NA non-coding upstream 128539 5409457 ~ 5409673 (+)
G53382 NA non-coding upstream 129448 5408444 ~ 5408764 (+)
G53338 NA non-coding upstream 135984 5399593 ~ 5402228 (+)
G53352 NA non-coding upstream 170262 5365850 ~ 5367950 (+)
G53257 NA non-coding upstream 493272 5044705 ~ 5044940 (+)
G53396 NA non-coding downstream 15082 5554770 ~ 5554990 (+)
G53402 NA non-coding downstream 33946 5573634 ~ 5573866 (+)
G53584 NA non-coding downstream 42769 5582457 ~ 5582685 (+)
G53632 NA non-coding downstream 202564 5742252 ~ 5742466 (+)
G53637 NA non-coding downstream 206887 5746575 ~ 5746951 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2329228 3202207 ~ 3208984 (+)
G51529 NA other upstream 2475625 3062033 ~ 3062587 (+)
G51274 NA other upstream 3187726 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3636786 1897343 ~ 1919516 (+)
G51122 NA other upstream 3856246 1680146 ~ 1681966 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 320614 5931718 ~ 5943899 (+)
G53651 NA other downstream 705876 6245564 ~ 6248392 (+)
G56100 NA other downstream 3589612 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4313671 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 6221098 11761606 ~ 11766944 (+)

Expression


Co-expression Network