LOC103041151


Basic Information

Item Value
gene id LOC103041151
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14574795 ~ 14578518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228304.2
CTTTGGCAGGAAGGCACATGTGCATAGACACTCACACAttcaccccaacacacacacacacacacacacgcctgtTGAGCATGCAGCACTCTCTCTAATTTTTCCTGCTCATTCTGTTACACTGGCTAGTGGACTACTGGGCAGCATCAGAGACACCCACACCTTGGAGTGAGTGCCATAAATCTCCTTCAGCACCTGAGCTTCCAGCAGCTTCACCTCCTGTCATTCTTTCACTCCAGCAGACACCTGAAGGCACAGAAGAAGACTTCACCTGAGCTTGACTGAGGGATTTCTGGACGTTCTACTTTGGGAAATGCTGCCATTCATCTAGCAACTAACTAAAGAGACCCAGACATGGTTTAGTAAAGACATGTTTGAGGTTTTATGCTCTGCAGCAAGATGGTCAACAGATAATCTACTGCAGGAGAATACATATGAGTCTTCTGTTTTCTGGATAACCATGATGTTGAGGCAGTGGAGCTTTGCTGTGCTCTTACTGTGCATCCCTCTACCTGTTCAAGGGAGACCCATCCAGGCTCTCAGCCACAGACTGAGGCGATCTGTGGGTCACGCTCAGCTGATGCACGATAGAGGACGGTACCTGCAGGAACGGAAGAGGCGTCTGTGGCTGCAGGAGCTTTTCAAGCAGGTGCACACTGCCAATGTATGGGACACTCCCTCAGACAGTGACGCTGGCCTCCACGCTGTTACCTGGGGTGCCCACAGCTCCAAGCCTGCCAGCAGCACAAAGGAGTTTCCTGTAGACTTTGAGCCAGAGAGCACAGGCAGCAGTGACACTCTTCTGCAGGAGACCAACAAGGAGCAGACTCTGCAAGGTGCtgcaaagagaaagaagagagtgtGCCTGGGGAAGTGGAGAGATGGCACAAGAAGAAGAGGATGGCCATGCTTAGGCTACAGCTCAGGACCAATGAGAGGTCCATGACCAGAGAGACCTATTGGCAGATTCAGACAAGTGTGCAAAGAGCCATCAACCCCTCTGGTGTCTGGACAATTGCTTCTGAACTCTTCTGCTAATGTCTGTGACCAGCAGAAAtaaagtacagtactttataaTGATGTGTTGCATCATCTCATGCACTGTCTAAAGACGTAGAGGTGTTTAAACGTAGTCCAaagattcttttttttggaaatgtcaATAGTGATTTACCATTGAATTTTTTTCAGTCTATTCAGTTTATTCTTAATCTGCTTCTGGACCATAGGATTTAGACTAAGCTCATGTTCACACCTGGTCACTTAAAATAGCTCATATCTGGGTTTTATACTAATTCGATTCTGGCCACATGCCTCTATTTAAACTTGGTAGTCCAATGTGTCTCCAGTTAGTTAGACTGTAATGCGTTTGACGAAATATGCAAACTCTCTTGTTAAACAGCAAATATTACTACTGTTTCAGTTATACTGCAAAGAGTTTTGGTTGTTCAATTGTGTAACACGTGGCTTAAATGTGTCTCTGACCTCCTGTTtgattgatcagatttgtatccgTTGTATGTGTgtcttgggtgtgtttacacttgatTTTAATAAGACTCGGCCTAATTCAGATATAATCTTGGACCCAGTTTCCCAAAGGATGTTTACATACAGAATATCTTAACATGGGGAGAGAGAGTACTTAGTATGATGTGCACTTGACCATATAAGAATCATGATCTAAGAAACATCTTTGTGCTAAGAAGCTTTTAAGAAACCCACCCTCACCCCCCACTCAAGCCAGTAAAGgggccaggtgtaaacagggtctaaaCACATTGCCAAACACAGCAATTGAAGCCTGACAATACAGATACAAGTCTggtttctgtattttatatggAAACAAAATCAagattcatttcattttatataactaaacaaactaaactaaatccaTACatctttgcatttatttatttgattagaaAGGTGAATATTTATTCTGTGAATGTATCACAATGCTGCTGATTTTTCTACAAGTTTCAGACAATGCACTTTAGACAGCTGTGCTATACGCCTGTACATCAGTATCTTTAAATCTAGTGTtttcttcagtgttttgttttatgtcttCCTTTTCCGTTTTGGTACAGAAATACTGTAGATATGGCTTTCTGCCTTCAATTTCTTTAAatcttttcaataaaaaaaagatgagcaataaCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228304.2 True 2175 mRNA 0.42 3 14574795 14578518

Neighbor

gene id symbol gene type direction distance location
LOC103040849 LOC108428736,LOC104940688,LOC108274568 coding downstream 574 14566910 ~ 14574221 (-)
cib1 cib1,kip1 coding downstream 19840 14550872 ~ 14554955 (-)
LOC103024229 LOC108428793 coding downstream 114407 14390685 ~ 14460388 (-)
pamr1 pamr1,LOC102307280,LOC107570358 coding downstream 610769 13920173 ~ 13964026 (-)
slc1a2 slc1a2,slc1a2b,LOC107740049,LOC107570361 coding downstream 665192 13861550 ~ 13909603 (-)
LOC103028140 golt1bb,LOC107551388,LOC107676462,LOC108428784,LOC107754325,LOC107701063 coding upstream 35873 14614391 ~ 14619388 (-)
gpr22 gpr22,gpr22b,LOC108428781,LOC107754326,LOC107676451,LOC107561157,LOC107701065 coding upstream 61483 14640001 ~ 14649251 (-)
LOC111193055 NA coding upstream 109171 14687689 ~ 14690107 (-)
prkar2b prkar2b,LOC108275286,LOC107732287,LOC107551419,LOC107676465 coding upstream 140036 14718554 ~ 14733253 (-)
mphosph6 mphosph6 coding upstream 244700 14823218 ~ 14826889 (-)
G73509 NA non-coding downstream 106654 14467622 ~ 14468141 (-)
G73491 NA non-coding downstream 297689 14276679 ~ 14277106 (-)
G73434 NA non-coding downstream 502757 14070499 ~ 14072038 (-)
G73432 NA non-coding downstream 536427 14038069 ~ 14038368 (-)
G73429 NA non-coding downstream 567646 14006752 ~ 14007149 (-)
G73540 slc25a3,LOC107569351,LOC107732290 non-coding upstream 19433 14597951 ~ 14605960 (-)
G73606 NA non-coding upstream 97363 14675881 ~ 14676858 (-)
G73617 dus2,LOC107555686 non-coding upstream 166652 14745170 ~ 14748658 (-)
G73622 NA non-coding upstream 178381 14756899 ~ 14757248 (-)
G73605 NA non-coding upstream 218837 14797355 ~ 14800633 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 29259 14542196 ~ 14545536 (-)
G73172 NA other downstream 1953439 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2009817 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 2523306 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 3029549 11520887 ~ 11545246 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 130540 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 545296 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 802811 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 1179785 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1888571 16467089 ~ 16470323 (-)

Expression


Co-expression Network