avpr1a (avpr1a,avpr1ab,LOC107592260,LOC107725953)


Basic Information

Item Value
gene id avpr1a
gene name avpr1a,avpr1ab,LOC107592260,LOC107725953
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26766093 ~ 26774390 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231187.3
actgCTGCGCTCTGACTGGCTGTGTGCTGGTGGGTAGGAGCTCGTGCGCTCCAGAGCACATCAGCTTATAGCGCAGTTTCTGTAAAGCGCGCAGCAGCAGATGCGAAGAGGAGACTAACGGAGCGGAGTGGAGCGGAGAGGAGCGCGCATAAAACATCTGGACGGAACGAGCGCGCGcgcagctggagcagctggagaaTGACCTGAAGGAACTGATTATTCACTTATCAGCCTATAGCCTATATCAACCCTTCCCATCACCTCCTTtattcctctcctcctccttcatgATTATGATCCACTCCCTGAACTCCACCATGGCGCGCGCAGCCAACGCCTCGGCCGCCTCCGCCAACAGCAGCGACCTGTTCGGGCGCAACGAGGAGGTGGCCAAGCTGGAGATCACCGTGCTGAGCGTGACGTTCGCCGTGGCCGTGATCGGCAACGTGAGCGTGCTGGCCGCGGTTTACAACACCAAGAAGAAGACCTCGCGCATGCACCTGTTCATCAAGCACCTGAGCCTGGCCGACCTGGTGGTCGCCTTCTTCCAGGTGTTGCCCCAGCTGTGCTGGGAGGTGACGTTCCGCTTCACGGGACCCGACCTGCTGTGCCGCCTCGTGAAGCATCTCCAGGTGCTCGGCATGTTCGCCTCCACCTacatgatggtgatgatgaccGTGGACCGCTACATCGCCATCTGCCACCCGCTCAAGACCCTGCAGCAGCCCACCCGGCGCGCCTACGCCATGATCGGTGCCACCTGGGCCGGCAGCCTGGTGCTGAGCGCCCCGCAGCCCTTCATCTTCTCCCTCAGCGAGATCCAGCACGGCTCCGGGGTCTACGACTGCTGGGGCCACTTCATCGAGCCGTGGGGCATCCGCGCCTACATCACCTGGATCACCGTGGGCATCTTCCTCGTGCCCGTGCTGGTGCTGATGCTGTGCTACGGCTTCATCTGCCACAGCATCTGGAGGAACATCAAGTGCAAGACCAAGAAGCACGGCCTGGTGGGCAAGAGCTCGGTGAGCGGGGTCAGCACCATCAGCCGCGCCAAGCTCCGCACCGTCAAGATGACGCTGGTGATCGTGCTGGCCTACATCGTCTGCTGGGCGCCCTTCTTCATCGTGCAGATGTGGTCCGTGTGGGACGCCAACTTCAGCTGGGATGATTCAGAGAACACTGCAGTGACTCTCTCTGCGCTTCTCGCGAGTCTGAACAGCTGTTGCAACCCCTGGATTTACATGATATTCAGCGGACACCTCCTCCACGACTTCGCACACTGCTTTCCCTGCTTCCCCAAAATACAGCACAAGTTCAAGAAAGAGGACTCGGACAGCAGCTTACGGAGGACCACCATACTGACAAAACTCCCGAACCGGAGCCCTACTTGCAGTGTGGGCAACTGCAGAGACTTGGATCAGACCCCTAAAGCGGACTCGACTTCTCCGCTGGAAACATGACATTCTGCATCAGCTCCGGACTGAGAATGTCCTCATGATATCACAGCAGGGGCTGGTCTAAGGTGTTGTTTTCTCAAAGCTCTGCTGGGAAGTGGAGGATAAACCGAGAAGGCTCTGCAGTAAATCTTAAAACAGTGCGGCTAAAGCACAATAGTCGAGATCGCCAAACGCAAGGCCTTTCCGGTGATAAGTGCTCGCTCAGGCACAGGCCACTGGATTTATCTGGGCTCCTATAAACCTGCGGAACCCACTTCTTGCCAGTACAAAACCCCAAGCTAAGGATAAAGCCCAGCTTTGTTATTCTGAGATGGAACATTAGTGTGAATCAACATGCACAGCATGTGCTGTTTGCAAAATTTGAATTCATGCaggacaaaaacaaaacagtgagtttgtttacatgcacttcataatctgattagaAATGGATTTCTGCAGTTATCTCATTATATAAGTAAGCATGTAAACAGCATCCTGCGATTTCAGAAATTGGTGTCTAGGGTCTAAGAATCTGAATAATGAAGAATCTAATAAAGAGAGACACATTTTCTCTTAACTTGGATTATTCTCAGATTTCTCAGTCTGTGCAAACAAGAAAACAGATTGTGGTACAAGCAAGCAGTCTTTAACATAGGACCCATGAGAGGGAGACAAACACTTCTGAAGCAACTatgaaactaaataaatactaaagagTTTAGCTGATGTGTGTTGATTTCGCAGCAGGAtgtgataaacaaaaaaaaattgtgacaaACTCCAATATTGCAGTAATCGGATTATGAAATGCAAGTATATGCACTTACTGAAAGATTAAAGAAATTaatgatcagatcagatcagatttgctATTCCCCATTTTGTAAATCACTGCAGAGATGTTCAGGAGAATAAAAAAGAACCAACACATGAGAATACTGTCAGCTGTGATCTGGCACTCAATGTTCAGGCTCCTCCGAGAATGGCCAGTTGTTTACAAGGTTAGATGTGGTCACCTGGGTCAATAACCAAGTTTGAGACGTTAGCAGATCTctcacactctacctctctgtctctttctgtctttctttctctctctctctaacacacagacacacacacagcccgcctgtacaaataaaaggatttttCCTTTGGTTTTTCCACCACATCTATCTCTGCTTTGGCTGACGTGGCTGAGCCcttttgttgtattttaaatgatttattttctggaattCTTCAATTTCAGTAGCATCCATTAATTACAGGTAACACAAATCATTTTACACTCTTGGTTCTTTGAGCAGTGCCAAAGAAAATAATTCTGGTTccataaagaatcatgtttatatagtgtgtatatatgtgtatgtgtgaagaacctttaaattaGTAAAGGACCTttagttctaaaaaaaaaacttagtaaAGGTTTTTTAGAGCTCTCcctgattttaaattaaatcaatttaatcTGTCAACATTAACTTTTGTACactaatttatttttgaaacaAAGCTTTAGTAAAAACAGCACTACTTTAATCACcctcaaacattaaaaaaaaatcatattactAAAGTGAAACATGCAAAATCAACCCTTATTTATGTACCACAAAGATCAGTTAAAAAAACGAATagaaaattaatacaaataagagaattattcaaaatagacatttgaatatataaattaacaaataaaatactctctttgtattattttcctttttaaagtgCTTAGAAACACTCAAATCTGACACAAAAAACTAGCTAATTGTGTGCTAACATGATTAGCAACATaatcttagctagctagctagctctgaCTCCCTGTGAAAATGCTAAAGACGTAGTTAGCTGTAGCGCTGTCAACCCTTTAAAATACTTCTTATTTAGTTAGACCCATAATATTACTGGTAGCCATTTAGTAGCAACAATTGTTTTTAAgctatatgttttaaaaagcattttcacTTTACCTCAGAGGCAGCAGAATATGGAAACTTCCAGAGTGAGCTCATTCATCCAGTCACATGATCTCCTGCTCAGTCTAAACTCAGTGTAGACTCCATGCCATTAGTGCCAAGGTCAAAAACGTTTATCGATATTTTACTGTTGATCCAATATTTTTACCTCAaccaaaatagtaaaaaaaataataaaatgatatatcACCTTGCTATCCGGGTTAACCTCTTAAACTCCTCAGAACCACTGATGGTTCCTGGCTTTTTTTCTCCCACTGTTACAACTTATTACAATAGCCAGCCAGTTAGCACTGATTTGCATGTAGTTAACAATTGGTAATCTTTACGATGCAAAATGTTCCAAACACTCTATTCTATTCACAAATCTCTATTATAAACATGGTTCTTCATTGGGACCAGAAGAGGTTCTTCTAAGGCATcgcttaaaaaataatttaaggaaCCTTTATATTAAGGGTGTAAGTGATTCAAATCCACGGATTCAACTCCAATGATTCATTCCTCATCTGAGTGGGTTCAGTCAAAACAGAACAGAATCTTTCATAAAGCTTGGATATTACCTTGTGACCCTGTTTACAACATCAGCAATGTTTTCCATGGAGAACATCCAAACACATGACTGTAATATCtttataaatatacttttaGCTGGAAATGGATTTTCAGTAGGTGATTTTACTCTTTTGCAGTTTGAGTAGACACCAGGATTTTCAGTGCATGTGTATCGGTGCTGGTGTGCATGTTCAACCTGTAAAACAATCGTTGTCACATTTGCAACAAATGGAATGTGATTTTTCTGTATATCAGACGTTCTGCATTTGTATGAACCTTTGTGTTGTCCCATTTTATGCTCTATATGGAACAGTGTAGTACTGCTCAAGGTGTTGTTGATGCAGTGTCTGTTGTCTATTGACTCTGTTGCCTATACTTGCACCACTTCCAATACATATTATTGATGTATCCATGTGCAAAAATCCAATAAACCACTCTTTGAATCGTC

Function

symbol description
avpr1ab Enables peptide hormone binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; positive regulation of vasoconstriction; and regulation of systemic arterial blood pressure by vasopressin. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in blood vessel endothelium; central nervous system; and head. Human ortholog(s) of this gene implicated in autism spectrum disorder; bipolar disorder; hypertension; and mood disorder. Orthologous to several human genes including AVPR1A (arginine vasopressin receptor 1A).
avpr1a Enables vasopressin receptor activity. Involved in positive regulation of cell population proliferation. Located in endocytic vesicle; endosome; and plasma membrane. Implicated in hypertension. Biomarker of portal hypertension.

NR:

description
PREDICTED: vasopressin V1a receptor

GO: NA

KEGG:

id description
K04226 AVPR1A; arginine vasopressin receptor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231187.3 True 4436 mRNA 0.44 2 26766093 26774390

Neighbor

gene id symbol gene type direction distance location
LOC103035555 ppm1h,LOC108429443 coding downstream 49778 26689454 ~ 26716315 (-)
LOC103029104 fbln1,LOC108429449,LOC108275342 coding downstream 327805 26391015 ~ 26438288 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding downstream 631249 26091262 ~ 26134844 (-)
yars2 yars2 coding downstream 681092 26079376 ~ 26085001 (-)
cdkn1b NA coding downstream 688100 26073097 ~ 26077993 (-)
fem1b fem1b,LOC107680899,LOC107575886,LOC107738637 coding upstream 183580 26957970 ~ 26966063 (-)
LOC103035861 LOC108429396 coding upstream 227838 27002228 ~ 27003545 (-)
G76853 NA non-coding downstream 34039 26731779 ~ 26732054 (-)
G76851 NA non-coding downstream 36437 26729288 ~ 26729656 (-)
G76837 NA non-coding downstream 92705 26672997 ~ 26673388 (-)
G76802 NA non-coding downstream 252199 26498913 ~ 26513894 (-)
G76771 NA non-coding downstream 363488 26401613 ~ 26402605 (-)
G76892 NA non-coding upstream 84647 26859037 ~ 26859471 (-)
G76897 NA non-coding upstream 111489 26885879 ~ 26886114 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 1464325 25282789 ~ 25301768 (-)
G76424 NA other downstream 1581624 25184209 ~ 25184469 (-)
G76377 NA other downstream 1845728 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 1967477 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 2505563 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 82239 26856629 ~ 26878862 (-)

Expression


Co-expression Network