LOC103031630 (LOC108412538)


Basic Information

Item Value
gene id LOC103031630
gene name LOC108412538
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26891876 ~ 26958394 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231189.3
TCCCCCTGATTTTGTGCTGCTGTGGCACTGCAGTTGTTTCAAGCAGATCAGACACTTTATAGCAAGCGGTGTTgaccgacacacacacttatacacacacacagatatacacacctACACTGACTGACCTACACATATACACTCCCATGGAGTATTATCCTATCCTACTGCTTTGGACCTGCTTCTTGTTCCCAGgGAACAGGGACTGCTTCAGTATTGACACGAAGAATGCCCAGATTATCCGAGGTCCAAAAGAGGCTCAGTTTGGATACACAGTACAGCAACATGAGGCTCTTGGTCAGAAATGGCTTCTGGTTGGAGCTCCGTTTGAGAAGACTGGTGAAAATCAGACTGGTGACGTGTACAGGTGTCCACTGGAAAGCAGAACTAATGCAAAATGTTCACGACTGAATTTAGGGGAAATATCCCTGAAGAATGTAATAGAACGCAAGGACAAAATGAATCTGGGGATGTCCCTGGCCTCCAACCCGAAGGATAACAGTTTTGTGGCTTGTGGTCCATTATGGTCGTATGAATGCGGCAGTTCCTTGTACAGTACAGGAATCTGTTCCAGAGTGGACAGCAGTTTTAACTTTACGCGCAGTATCGCTCCAGCCTTTCAGAGATGTGAGACATATATGGATATAGTAATAGTGCTGGACGGATCAAATTCTATATATCCCTGGTTTGAGGTGCAAGATTTCCTAATCAACATCCTCAAGAAGTTTTCCATTGGGCCAGGACAGATCCAGGTTGGAGTGGTGCAGTATGGAGAAAGAGTGGTTCACGAGTTTCAACTGGATGACTACCACACTGTAGATGAAGTGGTGTCAGCAGCTCAGTACATTATCCAGCGTGGAGGAGAGGAGACGCGCACAGCACTTGGAATTAATGTTGCACGGTCTCAGGCATTTAAGCGCGGAGGGCGTCCAGATGCTAGAAAAGTGATGATTGTGATCACTGATGGGGAATCACATGACAGCCCAGACCTACAGAAAGCTGTggaggagagtgagagggaCAACATCACCCTGTACGGAATTgcaGTGCTTGGCTACTACAACCGGCGTGGGATCAACCCTGAAGCCTTCTTAAGAGAGATCAAATTGATCGCCACCGACCCTGAGGAGCATTTTTTCAATGTGACGGATGAGTCTGCTCTGAAAGACATCGTTGATGCCCTGGGAGAGAGGATCTTCAGCTTAGAGGGTACAAACCAGAATGGAACTGGCTTTGGACTACAGATGTCTCAGGCAGGTTTCTCCTCACACATTGTAGAGGATGGTGTTTTGGTCGGTGCTGTAGGAGCTTATGACTGGAACGGCGCTGTCctcaaagaaacacagaatggCAAAGTAATCCCGCCCAAGTCGGCATACCTCAAAGAGTTTCCTGATGAGCTGAAGAACCATGGAGCTTACCTGGGCTATATTGTATCATCCATCGTGTCAGCGTATTATGGACAGCTGTATCTGGCTGGAGCTCCTCGTTTTAACCACACAGGCAAAGTCATCATCTTCACCCTTACTAACTCGGGAAACCTCACCATACTACACTCTCTAATAGGGGAACAGATTGGCTCCTATTACGGCAGCGAGTTAGCTCCACTAGACCAGGATGAAGATGGAGTGACTGATCTGCTTCTGGTGGCAGCGCCCATGTTCTTCAGTAAAGGCTGGGAGAGAGGGAAGGTTTACATCTACAGGCTGAGCCAACAGGGCCACTTTGAACTGGAAGGGTTTCTGGAGCCATCAGCTGAAGCACTGAACTCACGTTTCGGTTCGGCCATGTCCTCCTTGCCTGACTTAAATGGTGATGGTTACAGAGAGTTGGTGGTGGGTGCACCTCTGGAGAATGACCACAGGGGGGCAATCTACCTCTTCTACAGCCAGCACAATGGTATTCACCCAAAGTATAAGCAGAGAATATCAGCTGTGGACATTTCTCCAGGCCTTCAGTATTTTGGACGCAGTGTCCATGGTGTGATGGACATAAATGGAGACGGTTTGATAGACCTGTCTGTAGGTGCACTTGGTGCTGCTGTCTTGCTCTGGTCTCGCAGCGTGGTCCGTTTACACATAGCTGTTGACTTTGAGCCATCAAAGATAAACGTGTTTAACAAGGACTGTGTGCGAGGAGGCAAAGAGGTGACGTGCATGGCAGCCAAAGTATGTGTCACTGTCACAGCTCGAACTGCAGTGGCAGAGCCACAAGAAGTTGCTCTTAGGCTTAACTGGGGGTTTGATGAAAGGCGGTACAGCCCCAGAGCCGTGCTGGATGCTGCTGAAGgacaaacatttttagacatcTCTGTGCTACCAGGAAGCCAGCACTGTGAGCATGTCTACTTCCATGTGCACGACACTGTGGACTACACTCGGCCTATAGTCTTCAGTGTGGAGGTGGGACTTCAAGACCCTGATCATGGTCCGGTGCTGGATGATGGCTGGCCCACTGTACTGCGTTCAGAGCTGCCCTTCTGGAACGGATGTGATGAAGATGATAGATGCGTTCCTGACCTTATACTTCAGAGTAACACAGATCTGCTGGACTGTAGGCAGTTCTGTGCCTGGCCGGAGCGTTCCGCATGGCCATTGTGTGTCCAGCAGGAGGCGTGTGTGAATATTGAACGTGTGGTGGAGGCCAGCAGAAAACGAGTGTTGGTGGAAGTTCGACTGGAAAACAGAGGAGAAAATGCTTATAACACAAGGCTCTATATGTCTCACTCTGAGAACCTGCACTTCTCCAGCCTGATAGTGAAGGCTCCTTCTGACCTAGCAATCAGGTGTCAGGCATCAGACAGACTGAGCTTTCAGAGAAGCTGCAATATCAGTGCTCCGTTTATGAGGTCACAGACCCAGGTAAATTTTCGGTTGGAGTTCGAGTTTAGCAGAACGACCTTCCTAGATTATATACAAGTTTCTCTTAAAGCCTCCAGtgaTGGTGAAGAAAGGACTGCAGACGACAACATCAATGTTATATATCACCCACTGAGAAACGAGGCTGATCTCCTCTTTACAAGAGATTCTAATCCACCTCGATTTGAAATCAAATCTGATTCTCCCAATGGGTATCCAGGAGTTATTGGTCCCACCTTCAATCTGTCTTATCAGCTCCAGAACCTTGGTCTGTTCCCCGTGACCGACCTCCTCTTCACTCTAGAGATCTTCGCAGTGACCAGAAACATCAATCAGCTTCTGTACATTTCAGGCATTAATGTTGATCAGtCAGCTGGCTCAGAGTGCATTGCTCCACGTGTCATTGCAGCAGGTCTGCCCTCTGAAGAAGATCTCACGCTCACACCACAGCTGAACTCATCAACTGGTCGAGCGCTGTCTGCTGAGTGCAGGGTCTCTCTGCTGCCCCAACAGGACATCAGTGTGACTGTGACGGGATGGCTAAACCTCCACACATTGCTGACAATAAACTTCAAAGCTCTGGAGTTGGTGATGACAGCAGCCATTGAGTTAAACCCAAACAGTCAACTGTTCCTGCATGAGGACAGACCTACAAGACATATAATCCTGGAGATTAGGAAGGATGAAGATTACAGAATTCCCATCTGGATTATAATCGGAAGCACTTTGGGAGGCCTGCAGCTTTTGGCTCTGCTAGTTCTGGCACTCTGGAAGcTGGGGTTTTTTCGAAGGCAGAGGCGACACAAGGAAGAGCAGGATGCCAACGAGAAAAGCAGGGAGGAGCGGTAAAGCCTTGGTGTGCTCACTCCTTCAAGGACTTTCACTCAGGGACTCTCCAGGAAGGAGGACATGTCTTTGCAGCACTACAGCCTATCAGATCCTGTCATGCACTGCTGAGCCCGCCCACTTTCTGACAGGAGAAGTCAGCTGTCGGTTTGCAGTGCTGCAATATGAACATGGATCTCTAAGAAGTTGTAACTTATGACCGAAGACTTAAAGGTGCCATAGAATGcatttattctgtgtttaaagttgttaatggctgtatatacagtatattaagtgTGAGAGTTTGGTTTGGGAGTAAAATGCacagatatgtttttttatggtcatttgcaaccctgttattttgcctcagaTTGAAAACacccttttcttttttggacTTCTCACTGCAATGGCTCACAGAAAccacatagcatagcatagccgTTTAATACCACTGTAAGACGAATACagtattgtgattattttttgttttgttttgttttcctaagTGTTACCGGATAGAGTTCGCAGTGTGAATCAGGACTGTTAGGTAACAGTTATTGGGTCTCATCTCTGCCAAGATAAATACAGCTTTCCATTTAAAGACAATTTTTAAGGACCACTGTcagatttcatttaaatataagaGTGCTGTGGGGAAATACGCATACACTTTACATAAAACGTACAGTATGTTATAGACTAAAGAGCAGCAGAAAGAGGCTTAAATGAAGTCTGTTTAATACTCCACAACTTGAGCATTATTGCAATGACAAATCAAGACTTGATACTTTTaagaacattattttttatcaacaAGTCCATGTTGATGCACTTACACATATACACTTGAACTTggtgaacaaacaaacattgcCTTGTGAAATACAGCAAGgtgatctaaaataaaatactctaaatatataatataaccaTGGGGACGTCGCTGTGCACACAAATACAATGCTGCTTTGCACATTACATGGACTTACGCTCCTCAATAGGCTTCTAAACTTTTATTCTAAGAAGTTCATACAGTTTATTTAATCTCTGGCCAGCAATTTACCCTTATTTGTGCTCAACAACACAGCAAACAGCAAATGTTCAAATCATAGCAAGCCATGGCATGACAAGACAAAGGATTAGATACAACAAAGACTAATTAGTAAACCACAGCATGCCAGTTGGAGCATGCAGCTTGTTAACATTAGTGTATATTGAACCGAACAAAATGAAGTAAATCTctatggctacgttcacattacaagccacattgctcaaatctgatttttttgctcagatgaTCTTGATGATGTAATCTTGAtgattcacattcacaaatgtaagtcatctgtatctgtgtgtaatgtgaaccaATCTGTCTCTGAAACAtctcacatgcacacattgatAAGTGTATAAACGTCAAAAAAACGTcgtatttgagagacgactcgtagctttataaaggtgaaatggatgagttagcagctcatatgtggagcatcttttgctggtgTGGAGTTTAAACAGCTGGCCTGAATTTCATGTTCatgtcgaggaggtgaaaaaaagatcaggtggtttgcttttgctgtttttgcagctatagctgcacagctgcaccaagagatgtgagGATATGAGAGAGAAGCTCGTAGCACATGCATAAAAGAAAATTcagatttgactgttcacattcatgtcgcaggtccatggatcggatacatatccaaattaggaccacatatgaaagtgactcaaatctgataaaaaaaaaaaatcagatttagcacgttcacacagccatgaaaaaaaaatctgatctgagccacattgagcaaaacgtctaatttgagtcacttcagcctggtaatgtgaacatagcctataTGTACATGAGAGcaccattttattatttagtctACTGGAGCTAATTTGAATGTGATTCTCATATGTTGaagaaaacataataaagaaatgttaatttaataaaagtttttagaAGTACAAGAAGCAGGTGTAGATGGAGAAATGTAGGGAATATCTTAtgattaaaattgattaatGTATTTGTACAAGTAAAGACAAAGTAAATAAACTTGGTTCAAACTATTGCAttggagtcttttttttttttttgcattctgtGATTtctaaaaacacattcaaaatTGCAAATAAGTTATAGACCAACAAAGTTATTGGCTTTGTACGAATTGAATAAActgaatttaataataatgtactttGTGTATAAAAAGGTTGGAGTATCAAACAATATTGGGCAGATAATCTTCCTCTGGTAGAAATGTCATGGAACAATGACgtgaattttccttttattttaagGCCCAAAGACAAAGTTTTGCAGTACTTAAGTAGGCTTGTGGCTAATGTGTGCAAATGTACTGGTACACATACTTAATGAACTGGCTGAGCCCCATATGTTATACAACAATAGCTGTACCACAGAAAACTACATGCAGCAAAGAAAAGGACGAAGCACcttatgtttgtgtttaatgttggtttatttaatttgtaaataataatttcactGACACATTACAATCACGGTTTCTCAAGGACATGAAGCAAAGTCATCATTTAAATCCTCTTTCCAGTCAGGCTTGCAGACTCAAATCTTCAttatcacactcacacagacaagCGTATGCAAACTGAAGAGGGAAGacatgctctttctctctcagactcaaGTAAAAACATCCGAGCACCATCCTGATTAAGGCCCATGAGACAATACAGCCCACAGAAACTGAGCTTCTGCCCCCAAAACTCTAAAACAAGTCATCACCAACGATTctctaaaataatttaaattggcATAGTGGTTAAAGGAAAAATCTGgtggaaaaattaaataaaacaagggATTTAAACAACCTGTCCCAGGCACATTTTAGTgtacttaaa

Function

NR:

description
PREDICTED: integrin alpha-11-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231189.3 True 6629 mRNA 0.43 30 26891876 26958394

Neighbor

gene id symbol gene type direction distance location
mon2 mon2 coding upstream 321161 26515189 ~ 26570715 (+)
LOC103027405 LOC108429445,LOC108274519,LOC107558592,LOC107668651 coding upstream 377855 26490615 ~ 26514021 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding upstream 407695 26475507 ~ 26484181 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding upstream 605434 26236780 ~ 26286442 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding upstream 838762 25860529 ~ 26053114 (+)
LOC103032468 cln6,LOC108412537 coding downstream 10242 26968636 ~ 26982403 (+)
LOC103032770 calml4 coding downstream 28150 26986544 ~ 26999262 (+)
LOC111193118 NA non-coding upstream 206198 26683888 ~ 26685678 (+)
G76838 NA non-coding upstream 211986 26679640 ~ 26679890 (+)
G76833 NA non-coding upstream 320477 26571180 ~ 26571399 (+)
G76655 NA non-coding upstream 745124 26145625 ~ 26146752 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding upstream 798683 26087189 ~ 26093193 (+)
G76931 NA non-coding downstream 41800 27000194 ~ 27000955 (+)
G76939 NA non-coding downstream 89191 27047585 ~ 27047821 (+)
G76464 NA other upstream 1595408 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 1610505 25271256 ~ 25281371 (+)
G76423 NA other upstream 1707144 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 1887361 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 1908162 24974941 ~ 24983714 (+)

Expression


Co-expression Network