fem1b (fem1b,LOC107680899,LOC107575886,LOC107738637)


Basic Information

Item Value
gene id fem1b
gene name fem1b,LOC107680899,LOC107575886,LOC107738637
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26957970 ~ 26966063 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231190.3
AGGAACACTATGGCTACTATATCCTGTTATTTCTGGGACTCGGGCTAACTTCGCTAACTGCACTCGGACTGTTCTCTGTTTCATAGCATTAGGGAGCAGCGGTTAAACCTGGGTTGTCAGTGAAAGTGTCAGTGTCAGTTTTCGGCTTGTTTGTTTTGTGGCAGCGCTCGTTAGGTTAGACTTGAGCAGCAGCGCTGACTACTTGACTACTCCAGCAGGACTGAGCCGAGATTGAGCGAGGTTGACTCAGCTGTAGCGGCTAAAGCAGCTAGCTCCGGTTCtctgggttagctaagctaaatacATAACCGCTGTCTGGGGTCTGACCTCTGTCCTTATCAGTAGAAACGCGTGGGaatgtttattgtctttaattgTAGATAACTGTTATCATAGATTTAAGTAGTAGCGTAACGTGCCGTTTGTCATCGTAGCGAGCGAGTGAGTGTGTTACTGActcgttagctaacctaacctagctTTCCCAGCAGAACTCCCCACCTGAGTTTCACTCGGGTATCGTTAGGTAGTAACTGTACAGTGTGTAGGACCTCATATTAAACTCGTTCCTCCATAATCAGCTCCCAGGCAGAGATGAGTTTCTGTAAAGTCGGCCCCGGCTATTCACTTCCCATGAGCTTGTGAGCTCGAACCGTCATTTTAATGGGAGGCGGGCCGTGTTGCAGTGAAACTTGTGGGCGATATTTGCGAAGACGGCGGAGGCACCGGTGGCCCGAATGGAGTCCCTGGCAGGGTACGTTTACAAAGCGGCTAGTGAAGGCAGAGTCCTGACACTAGCCGCCCTGCTGCTGAACCACTCTGTGACTGAGACTCGGTACCTGCTGGATTATGTAACACAGTTAGGCGGACAGCGCTCCACTCCCCTCATCATCGCTGCGAGGAACGGGCATGATAAAGTGGTCCGCCTGCTCCTGGACCACTACCGCGTGGACACTGAGCAGACCGGGACAGTGAGGTTTGATGGATACGTCATCGATGGAGCCACGGCTCTTTGGTGTGCAGCAGGTGCGGGGCACTTCGAGGTGGTACGACTTCTTGTGTCGCACCATGCCAATGTGAATCATACCACCCTTACCAACTCCACTCCTCTCAGGGCTGCCTGCTTTGACGGCCGGCTGGACATCGTACGCTACTTGGTGGAGAACGGCGCTGACATCAGCATTGCCAACAAGTATGACAACACCTGTTTAATGATCGCTGCTTATAAGGGGCACACAGACGTGGTGCGCTTTTTGCTTGAGCAAGGGGCTGACCCTAATTCGAAGGCTCACTGTGGTGCCACTGCTCTGCACTTTGCTGCCGAGGCTGGACATCTGGACATTGTGCGGGAGCTGGTGAGATGTCAGGCAGCCATGGTTGTGAACGGACATGGCATGACTCCTCTTAAGGTGGCGGCAGAAAGCTGCAAGGCGGACGTGGTGGAGTTGCTCCTCACCCACGCTGACTGCGAGACTCACAGTCGCATCGAGGCTTTAGAGCTGTTGGGTGCTTCCTTTGCTAATGACCGGGAGAATTACGACATTCTTAAAACTTACCATTACCTGTACCTGGCCATGCTGGTGCGCTACCGTGACCCTGAGAGGATTATTGCCAAAGATCTCCCGCCACCTGTGGAGGCGTACGGGGGCCGTGAGGAGTGTAGGACCCCTCGGGACCTAGAGGCCATCAGGCAAGACCGAGACGCATTGCACATGGAAGGGCTGATGGTTCGAGAGCGCATATTGGGAGCGGACAATATAGACGTTTCGCATCCTATAATATACCGCGGCGCAGTCTACGCTGACAACATGGAGTTCGAGCAGTGCATCAAGCTGTGGCTGCATGCGTTGCGTCTGCGTCAGCGAAGCAACCGCAACACACACAAGGATCTCCTGCGGTTTGCCCAGGTGTTCTCACAGATGGTTCATCTGAAGGAGCCGGTGCTGGCTGTTGATGTGGAGCAGGTGTTGCTCTGTAGTGTACTGGAGATCCGCCGCAGCATGGCACGTATGGAGTCTGCCACCGAGGCCGAGCTTCCGGCGTTCACCGACAACTACGAGTCCAACATCTTCACGTTTCTCTACCTGGTATGCATCTCAACAAAGACTCAGTGCAGCGAGGAGGACCGAGCGCGGCTCAACAAGCAGATCTACGACCTGATTCGCCTGGACCCGCGCACTAGAGAGGGCTCCTCCCTGCTGCACCTGGCCGCCAGCTCCAGCACCCCCGTGGACGACTTCCACACCAACGACGTGTGCAGCTTCCCCAACTCGCAGGTGACCAAGCTGCTGCTAGACTGCGGTGCTCTGGTAAACTGTGTGGACAATGAAGGCAACAGTCCTCTGCACCTCATCGTGCAGTACAACCGGCCTATCAGTGACTTCCTAACCTTGCATGCCATCATAATTAGTCTAGTGGAGGCTGGAGCTCACACAGACATGACCAACAAGCAGAAAAAGACTCCACTGGAGAAAAGCACGACCGGCGTGTCCGAGATCCTTTTAAAGACACAGATGAAAATGAGTTTAAAGTGCCTGGCTGCTCGTGCCGTTCGACAGCATCACATCACCTACCGAGACCAGATTCCTAAAAGTCTTGAAGAGTTTGTGGAGTTTCACTGATCTTTATATGcatattttaatttgatatatttgtttttctttttaaagaatcCAACGGTGATGGGTATTCTTAATcaagtttatattttttggtccttttttttttttttttttttaagtacttaCAAAAGGATTTTACACCCATACCTGAAATTTGACATACCAGTTTATCCAGATTGATACAAAGTGTCTGTCACATACTCCTGCAGATCATTCTAATGACATGTGGAAACCTGGCCATTGGATACTGGCAAAGCCATGGACCGACAGTCAGTTTCTtgattcttatttttaaataatttttcataTCAAAAGGTCTTCATCTACAACAGCTATGGTCTTTGTTTACTCTAACAATGGTGTTCATGTTCCACATGTGCATTGCTGGGGTGTCTTTTATAACATGCTGTAAAATAATGCACTGGTGCATTTTGGGGCCATTGCTAAGGAACTGAACAGACAGTGAACTCTATATGAGTCTTTTTACGTGAACGACAGAGACTTGACAGAACGCTTGTTTTTTTACTGGCTGCACTTTGCTCTTTTgagttattttgttttattaacatattttataaaatgaaatattatttaaaaaaacaaaacgaagtgaaaaaatctattttctatAGAATCATTTGCAGAGGGTTTGATGTACTAAAATGAAtcattctaaaatgtttttttttttttgtttaagtacACTAAAATGTGCCTGGGACAGGTTGTTTAAATcccttgttttatttaatttttccacCAGATTTTTCCTTTAACCACTATgccaatttaaattattttagagAATCGTTGGTGATGACTTGTTTTAGAGTTTTGGGGGCAGAAGCTCAGTTTCTGTGGGCTGTATTGTCTCATGGGCCTTAATCAGGATGGTGCTCGGATGTTTTTACttgagtctgagagagaaagagcatgtCTTCCCTCTTCAGTTTGCATACGcttgtctgtgtgagtgtgataaTGAAGATTTGAGTCTGCAAGCCTGACTGGAAAGAGGATTTAAATGATGACTTTGCTTCATGTCCTTGAGAAACCGTGATTGTAATGTGTCagtgaaattattatttacaaattaaataaaccaacattaaacacaaa

Function

symbol description
fem1b Predicted to be active in nucleus. Orthologous to human FEM1B (fem-1 homolog B).

NR:

description
protein fem-1 homolog B

GO: NA

KEGG:

id description
K10349 FEM1B; Fem-1 homolog b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231190.3 True 3740 mRNA 0.47 2 26957970 26966063

Neighbor

gene id symbol gene type direction distance location
avpr1a avpr1a,avpr1ab,LOC107592260,LOC107725953 coding downstream 183580 26766093 ~ 26774390 (-)
LOC103035555 ppm1h,LOC108429443 coding downstream 241655 26689454 ~ 26716315 (-)
LOC103029104 fbln1,LOC108429449,LOC108275342 coding downstream 519682 26391015 ~ 26438288 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding downstream 823126 26091262 ~ 26134844 (-)
yars2 yars2 coding downstream 872969 26079376 ~ 26085001 (-)
LOC103035861 LOC108429396 coding upstream 36165 27002228 ~ 27003545 (-)
G76897 NA non-coding downstream 71856 26885879 ~ 26886114 (-)
G76892 NA non-coding downstream 98499 26859037 ~ 26859471 (-)
G76853 NA non-coding downstream 225916 26731779 ~ 26732054 (-)
G76851 NA non-coding downstream 228314 26729288 ~ 26729656 (-)
G76837 NA non-coding downstream 284582 26672997 ~ 26673388 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other downstream 79108 26856629 ~ 26878862 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 1656202 25282789 ~ 25301768 (-)
G76424 NA other downstream 1773501 25184209 ~ 25184469 (-)
G76377 NA other downstream 2037605 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 2159354 24791192 ~ 24798616 (-)

Expression


Co-expression Network