LOC103032468 (cln6,LOC108412537)


Basic Information

Item Value
gene id LOC103032468
gene name cln6,LOC108412537
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26968636 ~ 26982403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231191.3
ACTGCGGTGGGGAAACAGCGCGGCGCAGAGGCTGAGCTGAGGGGAATGGTGTCAGACCCGCAGCTCATGTTACTCACAGTAACACTGAGACAGTACCGGACAGCTATGGCCACGCTGCTGGTTTGTGAGCACGGGACCGCGGGGAAAGCTTCCGTTGCTGGGCTGAGGGCTGACCCCGACCAAGCTGACATTACTGCTCACCTTCTGACTGCTGAAGCCGCCTGACAGCAGGAACTGCGGAGAACAGGAAGAGGACCTGAACCTGTGGAGCTGAGCTCATCATCTTTATTTATGGTGCTGCTGGAAGAGCAATGCAACAACCCACTACAGTGCGAAAGAGGCAGAAGGCCgccctgcagctgcagctggCTTTTCTGGCCAGCGACAGACATGCATCCAAGGACACAGACACCCCTGTGAAGAAGCCTCAGTTCCACTTAGACCTCTGGTGCTTCTTCACCATCCAGAACTGGGTACTGGACTTTGGTAGATCCATCATTATGATCCTGTTTCCTCTTCAGTGGTTCCCTCTGAATAAGCTTATTGTTGGAGACTATTTCCACATCGCTTACAATGTCATCACACCCTTTCTTCTGTTGAAGCTCATAGATCGCAGTCCTAAGACGCTGCCTGTGTCTGCTGTTTACCTCTGCATCATCGCTTTTGTGATGGGGGCCAGCATAAATCTGGTCGGAGACTCCATGAATCATCGGCTCCTGCTCAGTGGCTACCAGCTGCACCTGTCAGTGAGGGAGAACCCCATCATGAAGAATCTGAACCCACCTTCTTTGgttGATTCATTTGAGCTACTTTATTACTATGATGAACATGTTGGACGGTGTTTATGGTACATCCCtttcttcctcatcctcttcctGTACTTCTCTGGATGTTTCACCGTCCTCAAAGTGGAGAAGAGAATGCCCCAGTCAGCTTGGCTGCTCCTGGCTCCGAGTTCCCTGTACTACTGGTACTTAGTGACTGAAAGACAGATCTTCATCCTCTTCATCTTCACCTTTTTTGCCATGACAGCCACTGTGATGCACCAGAAACGGAAAGGATTGGTGCCTGACTGTAACGGACTATTTCTGCTGTACAGCTTCTCAATAGTTTTGATTTTACTCACAGTCTGGGTCAGCTGTCTGTGGAATGACAAGATCCTCCGTAAAAAATATCCAGGAGTCATCTATATACCAGAGCCCTGGGCCGTCTACACACTGCATATTAGAGATAAACCCAGACTGTGATGTCTGTGTGACAATTATGACTGTGTCAGGCCTCTGCAATGCCTGTGAATGAAGGATGTCTGAAGAATGAAGAATGTCTGttccctttttccttttttaagtttaatcTACAATCCATTGTACATTGTATACTTCctacttttaattaattgaggtct

Function

symbol description
cln6 Enables lysophosphatidic acid binding activity; protein homodimerization activity; and sulfatide binding activity. Involved in several processes, including cholesterol metabolic process; ganglioside metabolic process; and lysosomal lumen acidification. Located in several cellular components, including early endosome; endoplasmic reticulum lumen; and membrane raft. Implicated in neuronal ceroid lipofuscinosis; neuronal ceroid lipofuscinosis 4A; and neuronal ceroid lipofuscinosis 6.

NR:

description
ceroid-lipofuscinosis neuronal protein 6 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231191.3 True 1405 mRNA 0.49 7 26968636 26982403

Neighbor

gene id symbol gene type direction distance location
LOC103031630 LOC108412538 coding upstream 10242 26891876 ~ 26958394 (+)
mon2 mon2 coding upstream 397921 26515189 ~ 26570715 (+)
LOC103027405 LOC108429445,LOC108274519,LOC107558592,LOC107668651 coding upstream 454615 26490615 ~ 26514021 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding upstream 484455 26475507 ~ 26484181 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding upstream 682194 26236780 ~ 26286442 (+)
LOC103032770 calml4 coding downstream 4141 26986544 ~ 26999262 (+)
LOC111193118 NA non-coding upstream 282958 26683888 ~ 26685678 (+)
G76838 NA non-coding upstream 288746 26679640 ~ 26679890 (+)
G76833 NA non-coding upstream 397237 26571180 ~ 26571399 (+)
G76655 NA non-coding upstream 821884 26145625 ~ 26146752 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding upstream 875443 26087189 ~ 26093193 (+)
G76931 NA non-coding downstream 17791 27000194 ~ 27000955 (+)
G76939 NA non-coding downstream 65182 27047585 ~ 27047821 (+)
G76464 NA other upstream 1672168 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 1687265 25271256 ~ 25281371 (+)
G76423 NA other upstream 1783904 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 1964121 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 1984922 24974941 ~ 24983714 (+)

Expression


Co-expression Network