fam96a (fam96a,LOC107673635)


Basic Information

Item Value
gene id fam96a
gene name fam96a,LOC107673635
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23418666 ~ 23425305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231193.3
TTCACTCTGTGATCGATGGTTCTGTCTGAACGCAGGGCGGAAGTAAGGGCACCGCTGTCAGCTGCTGAATTTGTTCAGGATCGGACTGGTCTGAAAGTCGCGCGGAGGGACGATGGAGACACGCGCACGATGGAGCTCCTGTCCAGCGTGGTGAATAAAGTGTTTCAGCTCTCGCTCTTCTCCGACCCAAAGAATGTTCAGAGGACCAAGAAAATGGAGGAGAAAGCGCTAGAGGTTTACGATGTAATTCGCACGATTCGGGATCCAGAGAAGCCCAATACCTTGGAGGAGCTGGACGTTGTGACTGAAAAGTGTGTTGAAGTTCAAGATCTTGGCGATGATGAATACCTCATCATTATCAAGTTCTCCCCGACTGTACCACACTGCTCTCTGGCCACACTGATTGGCCTCTGCTTACAAGTAAAGCTACAGCGATGCCTCCCATTTAAGCACAAGCTGGAAATTTACATTACTGAGGGAACACATTCAACAGAAGAAGATAttaaCAAACAGATCAATGATAAGGAGCGGGTAGCGGCAGCCATGGAGAACCCTAATCTGCGGGAAATAGTGGAGCAGTGTGTTACTGAGCCTGATGACTGAGACGTCCTTATaaacacatacacgcacacatgctttttttatgtgtgAACGTGGCCTGAATGACTGATGCTTCTTTTGATTTGCTTTTAGAAAGGCTCTGAAGGGTAAGTGATGTGTTGATTGACGGTAGTTAGCTCTGTTGACTCTTTGCCTTCTCTGCAAGCAGCAGTCGAGGCAAATAAAACTCAAAGATCAATCTGACAGCAATAAGCCCTGGTTTATCAGCCTGATGGTTTCTGGTCAGGGAGTTCTCGGAATGGAAAATAGCTGGATAAAGTTAAGGCAGACTGAATCTTAATTTTTCAGACGTCCCAAGAGTTATGAGACTGATGCCCAGATGGAGGAGAACGTCTGTATTTGTTTGTCAAGTTCCAGTTGGTTtgcctttttaatattctgactGAGTTAAAGGTCATtgatgaaaatataaaatgttttcttaGGCACAGAGCCAAGCTAGTGAAAATGCTAACTTCCTCCCAGACTCTCTGTCCCCAATCATGATGAAAACTCTTTACTCTGTTTTCTTGACTCTGTTTGTTCAGAGTGTTTCAGCTGCTCAAATTAACAATAATCAGTTCAGGTCAATATCTCTTATCATAACCTTTCACTGTATTATCATCATAAAGGTGATGAAATTCCCTAGCCGTAATTGTATGAAGCTTACTATGTCGTCTGTGTACGTCTCAGCTGGAAATTTCCTGTCATTTCTTTTCTGGGTCAGTTATTCTTCCTGATTGTTCTTTCTGTCCTCATTCagcctttaaaaataaatcaacttccttaTTGAAGCCTA

Function

NR:

description
MIP18 family protein FAM96A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231193.3 True 1399 mRNA 0.43 5 23418666 23425305

Neighbor

gene id symbol gene type direction distance location
rsl24d1 rsl24d1,LOC107694994 coding upstream 594250 22821117 ~ 22824416 (+)
LOC103027184 LOC108428395,LOC108275251,LOC103155695,LOC105938547,LOC106919346,LOC107706850,LOC103466445,LOC107552424 coding upstream 751857 22637160 ~ 22666809 (+)
LOC103021604 LOC103021604,LOC108428402 coding upstream 1447430 21956572 ~ 21971236 (+)
LOC103022337 yaf2,LOC108428404,LOC103358851 coding upstream 1463527 21948555 ~ 21955139 (+)
LOC103047463 prickle1,LOC107726281,LOC107695002,LOC107741965 coding upstream 1506371 21865975 ~ 21912295 (+)
saal1 NA coding downstream 253912 23679217 ~ 23687396 (+)
tph1 tph1,tph1a,LOC107673292,LOC107564603,LOC107670227 coding downstream 278620 23703925 ~ 23710875 (+)
sergef NA coding downstream 287225 23712530 ~ 23742791 (+)
LOC103043661 NA coding downstream 306757 23732062 ~ 23736230 (+)
dhtkd1 dhtkd1,LOC107559980,LOC107673284 coding downstream 360960 23786265 ~ 23802931 (+)
G75889 NA non-coding upstream 125524 23292836 ~ 23293142 (+)
G75882 NA non-coding upstream 143653 23274570 ~ 23275013 (+)
G75881 NA non-coding upstream 152347 23265930 ~ 23266319 (+)
G75874 NA non-coding upstream 203917 23214403 ~ 23214749 (+)
G75807 NA non-coding upstream 336995 23025275 ~ 23081671 (+)
G75957 NA non-coding downstream 356727 23782032 ~ 23782993 (+)
G75988 NA non-coding downstream 551760 23977065 ~ 23977422 (+)
G76060 LOC103039440,LOC108432681,LOC105892437,LOC107673304,LOC107740884,LOC107569705,LOC102199411,LOC100711429 non-coding downstream 615069 24040374 ~ 24041616 (+)
G76197 NA non-coding downstream 854189 24279494 ~ 24280790 (+)
G76202 NA non-coding downstream 864087 24289392 ~ 24291726 (+)
LOC103047784 LOC108428360,LOC108274708 other upstream 603144 22781735 ~ 22815522 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other upstream 637707 22754973 ~ 22780959 (+)
mov10l1 NA other upstream 2153890 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 2321760 21088622 ~ 21096906 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other upstream 2393538 21023256 ~ 21025128 (+)
G75938 LOC105900730,LOC105912833 other downstream 62225 23487530 ~ 23487870 (+)
G75974 NA other downstream 490486 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 606787 24032092 ~ 24037861 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other downstream 627756 24053061 ~ 24082844 (+)
G76192 NA other downstream 833204 24258509 ~ 24260506 (+)

Expression


Co-expression Network