CI01000009_05571226_05587885


Basic Information

Item Value
gene id CI01000009_05571226_05587885
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5570501 ~ 5588015 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_05571226_05587885.mRNA
AGCAACAATTTATCAATTTTAGCCGGCACCACAGAGGCTCTTTTGGCCGTGATGTGCACCTGTGTTTGGGGATTGAAACTGCTGAAGGCTCTGCTGCAGTGACTCCAGAGCACCAGGCTGAGTTATACTGATGGGCCCGTTGCACTTCTATGCAGATAATTCTCCAGCTCTACCTATAGACTCATGTGGTTTGAGAGCAAGAAATAAACCTGTAAAGAAGGGCAAAGGATGCCAGAATTATACTTCGTACCTCCGAGCTCCTGTCCCCAGGAGAGAGATGGACGAAGAGGGAGGGGAGGGATGCAAGTTGGGGGAGCTGTTAAGCCCTAACTCTGTGGTGGCTCCCTCTGGAGGGGGATTTAAGGGAGAAATAGAGAGCGAGCGAGCAAGGGAGATCATCTCAATCAGCCGAGCACTGGGACTGATAATAGAGAGGCACGAATCGTCACCGCTTCCAATCCTCTGCGTGCTCCGTATAGGGATCAGAGTGCCCGCCGTCTCCCAGGAGATGGAGCTGAGGTCCACAGTCGGTAGCATGATCACGCTGGGAGGATGTGAGGGTTTTTTCTGTCCAGCCAGAGAGAGACGGTGTAGTTGTGCTACTAGCCTCCAGGCCACTGCAAATAAATGGATTTTCTTTTTCCATTTACCAATATCCAGAATCTTATTTTATTCCCCTTTCACAGAGCTGGTACGCTCTAGGCGTTGTTATGGCAATAACCACATTAAGGCACATCTGGTCCAGGATGCAGCACAGACATTAGGACAGGATGGAACTGATGAGTTAGTAGAGAAGGACTTGAATCAGGTGGGAGCAAATGAGTATGATTGGAATGCTGGTGTGTCTCTGCATTCGTATTGTGCCATTTTTGATGCCCTGCTGGTCATTTCAAGAGCCAAGTCCCTGCGTGCCATCACAGTACCCTACGGAATCTACTCGACATATGTCCCTTTGGCAGCTGGGTCCACAACTGTCCACCCAACTTACGCCTGCACCTCGGCAGCTGAGCCACACTTCCCCGGGTCAAAGAAGATAGAGTTGCCGTTCTCCTTCACGCTGCCCGTTTTAATTGCTGTAAACACACTCAAATGCATTGCAACCTCTTCTATAAAGATTAAATCCAATAGCAGCCCCTGGGAGTTTGGACCCTGGCACAGGCTCATTGAGATGCCGGTTGAGGGGGCTTGGCAGAACAGCAAGGTCAGCAGATCTGTCGTGCCGCAGTGGCTCGGAGGACTCAGCCCATTCCCACCTCTGGCCAGTAATCCACCCCAGCACCCGCCACAGTCCAACCAGACAGCAGCAGTGCCGGACTATTTCAACACATTCAGCAGAAAGAGGGTACTTGAACCATTTCTCCTGTCCGATTTGCCATGTCTGGAAGGCTTGCAGATAAATAGATGGAAGAAAGAAATGAAAAACAATAGTTGACTTCTCATGTGGAAAGTATCAGCACATACCTGTGAGCCTCCTAACGCCAACAGCCACTTGTCTTCTGGAATTGAGTTCCTATGTGGTGTCTTTACACTGAGGTAAGGCCTGACTGAGACGGATCTTAAAATGGGCGAATGCTGAGTCACGCTGACAGACTCTAGCGGCCATGATCTCCTCATTGATTATCTGTACAGCATGCTGTGGCAGGAGGCCAGGAAGACCAGCAAACAGAAGGGCACAGGAAGGAAGAGAGAGAGTGTGTTATCTCATCTACAGGAAGCGGCCCGGCTCTCCGTGAAGACGCCAATATCAATCAGGTTTACCCACCACTCATATCTCGTAAAATGCAAATGCCGTTCCTCTGAGCCGTGAACCTTAATTAGAGCAGAATTACGCAAATCAAATATTGTTTTATATATTACGCCGTGAAATTGGGTTTAATTATGACATCAGTGCTGAAGCTCGCTATGCATTGTCCTCATATGCATATAAATGATTAGGTATATTGGTTTGACAGCTGTCCACTCCCTTTGCAAGCGGGCAGAAGTCTCTGTTGTTTGAAGAGGTCTCTGATCTTACTCAGCTCCTCAGAATACGGGATAATCCCGTGTTGTCTGCAAGCTCCCAGTCTGCGTCTTTAGTAGATATGTTGCATCTTTTAAACACAGGCGAGCTGCAGCTTCACGCTTCGGTTCAAAACACATGGTGGGGGGTCGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_05571226_05587885.mRNA True 2157 mRNA 0.49 10 5570501 5588015

Neighbor

gene id symbol gene type direction distance location
CI01000009_05513478_05515588 NA coding downstream 54913 5513269 ~ 5515588 (-)
CI01000009_05402729_05410456 NA coding downstream 160045 5402504 ~ 5410456 (-)
CI01000009_05367161_05370504 PTPLB, HACD2, DKFZP459B2333 coding downstream 199997 5365766 ~ 5370504 (-)
CI01000009_05362086_05363378 NA coding downstream 206420 5362042 ~ 5364081 (-)
CI01000009_05278137_05361256 ADCY5 coding downstream 209023 5277137 ~ 5361478 (-)
CI01000009_05675971_05682578 NA coding upstream 87757 5675772 ~ 5683383 (-)
CI01000009_05724421_05725824 NA coding upstream 135826 5723841 ~ 5725834 (-)
CI01000009_05759177_05759509 NA coding upstream 170984 5758999 ~ 5759770 (-)
CI01000009_05784097_05785842 FZD5 coding upstream 196050 5784065 ~ 5785842 (-)
CI01000009_05798886_05836104 PLEKHM3 coding upstream 209867 5797882 ~ 5838430 (-)
G53566 NA non-coding downstream 17400 5552890 ~ 5553101 (-)
G53556 NA non-coding downstream 23864 5539205 ~ 5546637 (-)
G53552 NA non-coding downstream 30813 5523644 ~ 5539688 (-)
G53514 NA non-coding downstream 61712 5506972 ~ 5508789 (-)
G53515 NA non-coding downstream 67111 5502395 ~ 5505248 (-)
G53988 NA non-coding upstream 142619 5730634 ~ 5730864 (-)
G53997 NA non-coding upstream 158560 5746575 ~ 5746788 (-)
G54000 NA non-coding upstream 163925 5751940 ~ 5752165 (-)
G54032 NA non-coding upstream 405170 5993185 ~ 5993404 (-)
G54065 NA non-coding upstream 431031 6019046 ~ 6019356 (-)
G52828 NA other downstream 1339032 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2308544 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 2671094 2883688 ~ 2893975 (-)
G52410 NA other downstream 3007968 2551724 ~ 2562533 (-)
G55814 NA other upstream 2837806 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 3270137 8856310 ~ 8860563 (-)
G59097 NA other upstream 6700202 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 8387373 13975099 ~ 13978614 (-)
G59490 NA other upstream 8445549 14033564 ~ 14037873 (-)

Expression


Co-expression Network