spg11 (spg11)


Basic Information

Item Value
gene id spg11
gene name spg11
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23370623 ~ 23418145 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231194.3
ATTGTGATGTCAGTGATGTGCCGGACTGGGCTgagctgtttgttttgtttttctggagATTATATGTTGTGTTTATGAGCTGTTTAGAGGGGCTTGTGTTCTCATGGGTTGTGTTGAACATGAAGAACTGAAGGCAGGCGGAGTGGAGGGGGGAGTCTGTGGGCTGCAGCTGTGTTAGCGGGGCTGAGCAGAGTCTAAAGACAGGGTTTAAAGTTGAGTAGCTTAGTGTTGATTTTATTTCCctgtttaaaacatgttaagCAGGCCTGAAGCTCGAGTGCAGAAAGCTCTAGAAGTCGCACTTCTGCCTGAAAACGACTTGTGTAAAGATGTTCACAACACGGTCAAAGCCAAAATGGCTAAAggctgctctctgctctgctgcCTGAATGCTGGGGGTAAGCTGGCAGTCAGTGATGTGTCTGAGAGAGGAGGTCCTGTGCATGTTCTCGAGGACTCACACACAGACTTTTTCTGGGAGGTGTTGACAGAGCAAAGTAAAACTGATGGCAGCCCTCGACTCCTGACTGTGGGACCTGCATGTGAACTCAGACTGCATGAGGTGGATCCAGAaatccctccctctcttctgTTTGAATATCCAGCACACAGACTGCTCCAGCTCCTCAAAGAAAAGGACTCCAGAGTGAATGAACTGGTCAGTGCCAAGCTGCTGTCATTCTCCGATGGCCGATGTTTCCTGCTGCTGAACATGGCAGTTCTGGTACAGCTCCTCTATGTGGAGGGTTCTGTAGAACCAGAGGCTGTGTCTTCTTGCCTTATCAACTTACCACCTGAAATTCGGGAAACATTTGTCGACTACCAGCTCTGTAGAAGCACACTGTTTGTGCTGACCAGCACTGGATTCATTTATGTGTTTGACAGTGTTGAGGGGAAGCACCTGGCCACTGTCAATCTCCCTGAATACTATGCATcaagacagagagaggcagaatcTGTGATGCCTCTTTCCTCCTTCTGTCTTCTGCACATTTCCCAAGACCTCAGCATGGCTGTAGCAGCCACAAGTCAAAACCAAGCACTGGCCCTGGACCTCAATGATTATTTCAGaattcaTACAGATCAGCTGCTTTGTCAGCAGTCTCCCACCCTCCCCCCTCTCATCCCCACAAAGCCCTGTGACCAGGACAGCATCAGCAGTGTGGCTCACAGTCAGTCTGTACTGGGCATCAACTTCCAAACAGACCACTCCTGGGAAGCGAGGTTAAAGCTTCTCTATAAAAAAGCTAAAGCTCCTGAACCACCAGCCCTCCGGCTGCCCTGGTATGGAGACGTCCCCAACTCGGAGTGCCGTCGAATGGCTGCCACTGCCAATCTCGGTCAACCCTGTGCACCACCAGGGGGCATCCTGACTTCCTTCACTGTACCTGAACAAACCACACCAACCATGCTGAATGTCTCAGAATTCTCGGTAGTGCTTACCTTCACCTCAGCGGGCAACAGCAGCACCATGCTGGCTCACTGGGATCTGGAGAGTCAGAGTGTGACGTATCACTGCGCTGATGCTCCTGCTGCACCTGTTCGGCGCTCAGAGGAGGAACACCTCTCTCTAATATTGAAAGAATCAGGCTTGTCTCTGGTGCTGTTCACGGTTTCTCAGGAGGAGCTGTTAAACAGATTGATGGTGTTTGGCAGTGCTGGTGTAGTGGACTCTCTCTGCCATCTAAATGACTGGGGGCGCTGCTCTATGCCTATCCATGCCCTGCAGGCTGGGCTGAAGAATAGGCAACTGGACATGGTGGATTTCTTTTTGAAGAGCAAAGAGAATATTCTGTGTCCACCTACAGGCTACGGTGTGCTTGAGCAGTCCCCTGCCATCACAACACAGATGCAGCTAAAGAATGCCCAGGATCTGTGTCCAGCCCTGGATCTTCTTCACTCTGCAATCAGAGACACATATGCTGAAGCTCAGAGTCAACAGTTCTGTGAACAGCTGCTTAACATTACACTCAACTTCCTTAATACACAGATCCGAGTCCTCCTCAGCAGCGCACCAGAGTTGGATGCTAACttgcaggagtgtgtgaagATCTTGAGTGGCTATATCTCTGAACTGCGCACCTATTTAAGGAAATACCCCTGGTTGGTAGGCGGCGATCAGACTCCTGCCCCTAAACAACCACCTGACATGACCATGGAGGAATTGTGGGAATCACTGTCTGTGGAGgaTGTGGTCAAGCAGGCAATTTTGTGCAGCGAGATCCCGCGTGCACAGGCGTATCTGCGCAGACACAGCTGTCCTGAGCAGAAGCTGGAAGAGCTAAGGAGAACAGGCCTGAGACTGGCCTTTAACTGCCTTACACACAGAGACCTGCAGCAGGCCACTACACTGCTCACTAATATGgGTTTTAATGTGAAAGAACAGCTTCACAGTATCTGTGTGTACACAGCCGATCGAGACCTCAGGGCATATATGGTGGAAGAATTGAAGAGGCAGAATCACCTCTCTTCTGAGGAGATGGAGAAAGTGGAGTTCATTAAACAGATTGAGAATTTGTGCTCAGCGCCAGCAGCAAGATGTTTAAAGGCTGTTGACAAGAACAGAGTTCTTCAaataagccaatcagaggtggagAACCGGGCATTGCTGCAGGAGATGCACGGACCACTATCTTCCTCCTTCCAGTCCCTGCTGGGATCTGTGCGTTTGGACTGGGTTAGACACTGGGATAACAACACACAGAAAACTGTGCTCCTCTCCAGACTTCCAGAGCCCTTGTTGGGCTCCTGTGATCCAGCTGTGCTGTGGTCATACCTCACCTCCCTTCATGACCAGACCCGCAACACTGCATGGCTCACCAGCATGGCAGCGCAGGACAGAGAGAACACTGCTGCCCCCCAGTGGCCTGCTCTCACTGCAGATATTGTGAATGGAAACACCTGCTGCAGTGGCTACATGAGAGACCAAATCCTCGACATGCTCGCCAGgCAAGAGGTGTTTGTGCAGTCAGAGATTTCTGATTTTGAGCAGTTGTTGTGGAGGCTGGGTCAGGCTGGAGGGGTAATGAGGGGTAACAGCGGCCCTCCTGTCCCACAGTTCAGTGCAGCCCAAGGCCAGGACTTCCATACACGCTTTATTCAGCACTGTCTGGAGAACAGTTTACACTACCTGCTCTATACCTACCTGGAGCACTACAGgCTGACACCCAGTAATTGCCCTGCTGTTGGGGACAGAGGTTTGTATGAGATTTATCCCTGGTTTGAGATGATGGTCAAACTGCAGAGGATTACAAGAGACCTCACAGACCCAGAGCGAGTGTTCCAGGCCAGTCTGACCAGTGCACAGGTGCTTTTGCCAGGCAGTCAGGCTAGTGTTAGCAGCATGCTGCTAGAGGGACATAGCCTCCTTGCACTCTCCACCATAATGTTTGGACCAGGAGGTATTGATCAGgtgGTGAAAGAGGGTGAGAAAGGTCAGGACGCTCTGTGCAGAGTCGACCCACAGCTCCTGAGGATGGCTCTGAGTCCTTACCCCAAACTCAAAGCTGCTCTTTTCCCCCACAGTGGCTCAAGAGCCTCTTCAGCTTGTGATATATCCATTTACCAACTCATGCAGTGTTTGCACCCCTTGGATCCCTCCAGACTGTTTGGGTGGCAGTCTGCCAACACCTTAGGCAGCGCCGAAACGTCCACTGAGCTTCCCCATTTCTCCAGCCCTCACCTGGTCAACAAGTACGCTCTCATTGAAAACCTGGACTTCTTGTACTACCTGCAGCACGGCAGACCTTCTTTTGCCTATGGAATTGTCATTATTCAGCATCTGGCTAACTCCAACAATATGAAGCTGCAGATTAGTCTGGCTGTGGAGCAGGCATACACTCTGGGTCTTCTGAATTTCAGCTCTCCATCTGTAGCAGcagcttgtgtgtgtttctgtgagcTGTTGGGTGTTTGCAGTCTGAAACTGAGGGTTGACCTCAAAGCCCTCAATCTCATCCTCAAGCTCTGGAGTCAGAACTGTGAGGAGAGCAGCTTAGCCTCACTCAGACAGTCTCTGGTGGAGAAGGTGAATAAGCTGGTAGCAGCTGAGAGGAAGACTGCTGAAGAACTGCTGCTACATCTGGAAGGAGCAGTGAGGGACAACGTGGAAAGGAGATGCATTAGCAGGTCATCGTATGAGGCGGGACAGGAGTGGGCTCTTCCTGTCCAGTTCTGCCACCTGCATGATCTGCCCCTTAGTGCTGGCTATCTACGAGACTGTGCCAGTGATGGCCAGTGGCTTAACTTCCTGCTGTTTGTGCAGCTTCACCAGTACCCTCCACAGCAGgTCAGATCACTGGTGACTAGCTTCACTCCAGCCCTGCAGGCCCACCTTTTCCTGGCCTTCCAGGATCTTCAGGTCATCAGACCTCAGGGAGCCATGGAGGTCCAGGGGGATTCTCTCCCCCCTCTGCCAATGGAGGAAAGCTCTGAAGCACCTAAAGATCTGTTCCAGGTGCTGTTAGAGAGCCAGGAGAAGACCAGCCCCTGGAGACATCTGCTGACTGAAGCTGTGGAGCAGCACAGTCCTCCACTTACAGTGCTGGCAGCATGTAACCAgGATGCTGAGCTCTTgcagtgcttgtgtgtgtggatCCTGACCTCAGTCGATGAAGAAGGTGCCCAGGAGGCCACCTCACACATCAATGAGAATCCAGGCCATCACACATGGAACCTTCATGACCTGTCAGTCTTATGGAAAACTCTCCTCCGCAAGTGCAAGATCAGACCTCTGATCCGTGGCTTCCAGCTCTTCCAGCGGGAGTCTCCACTGATCCACATGCTGCAGATGTTCGAGCTATGCTATGACTATAAAAGCTACCAGCGTGCCGAAGAGAAGCTACTGGAGTTCCAGAAGTGTCTACTTAATTTGAGGAGCAGTGGGAGTGTGCTGGGTCTGGAGTGTCTGCCGGTGCAGTGGGTGGAGTCTCAGGCCTCAGTTCTGCTGCTCACACTCATGCAGCAGTGTGAGACACAGTATGAACTGCGCaggctgctgcagctgctggcCAACATGGAGCGTCTGCTCAAGTCGAATGGTCCTGATTTTAAGAAGCTGAGTCAGTTGAGCCAGATCCTGGCAGAGACTCCTGTGTGTCTGTCCTCCTGCCTGCTGGAGGACTATACCCCTGAGAGCCTGCAGGGGGAGTGCCAAAGCatgctggaggagctgcaggagctggggCTCTTCTCCCAGGCCAGGAGAGTGGCTGAACTGGCAGGGCTGCCTATAGACCGCCTGATTGTTAATGAGCTACTGCGGGACTTGGAGGTGCAGAAGGCCAAGCGCCATTGGGAGAGGCAGGATACCCGACTGGCCTTCTGGAAAAGATGCCACGATCTGTTCAAGACCGACAGCATTGGGGCAGAAGCAGCCTGCcagttctttctctctcaggctgAGGATCCTTTGCAGAAGGATACAGAGCTTCTTCATGTGCAAGAACGCTGCCTCTTGCTGGGTTTGGCTGGTCACTGGCTTTCCCAGTGCAGATCCTCCTCTACTGCACACCGCTTGTCTCAGCTGGAGAAGCAGCAGTGGCAGTGCCGTGTCCGCCGGCTGGTCCTGACCACTGCGCTGGAGCAAGAGAGCCTGTTTGCTCCAGCCGCTGTGGTGGTGGAAGACTCCTTTGACTGCCTCCTTAGAGAATACTCCTTCTCCAAAATGGCCATTCTGAACAGCCCAACATATTTAAACCTGGAGGGACTTCCAACTTCTGAGGAGAGCTGCCCCCTAGTAGGAGAAGAACAGAAAGCTTTGACCACTCTAGTAGGCCAGCTTTTGGACGATGGGAGTGTTCATGAAGCGAGCCGTGTGTGTGGATACTTTGAGCTGTACCACAGGGATTTGAAGCTGGTGCTGCAGTGTCGGGGCTTGGCTTGTGGAGAGCTGCAGCCAGGCCTGCAGGAACTTCTCAGCCCCAACGTAGAGAGCAGGAGTCTCCCCAGTTGCTCTAGCACCAGTAGTCTGTCCTCCTTTGTGGTGGTTTCCTCCCCTGAAGACCAGGTCCTCTCTCAGCTCCAGCTGCTCGTTGAACAGTGCCGCCATGGCAAGAGCTACTGCAAGCAGGTCCTCAGCCTCTACGAGCTCTCCAAGGAGCTGCATTGCTCTTATGGTGAGATATCATCTGAAGAGCCAGAGGCAGTTCTTCGGAAAGTGCTCCTGTCCCAGCAGCCGGAACGCTATAAGAAAGCCCAGGCCTTTATCAGTGTCCAGGGATTACAGCCAGACACTGTAGCCCAACTCATATCCTCCACTGTGCTGGAAGGACTACTGGCTTCTTCACAGGATGAGACGGCAGAGCGTAATATATACAGTCCATCTGAAGGTAGAGAAGCCTTCCTGCAGCTGGCCAAACTGTGTGGCGACCCCAACCTGGTGGGCAGCAAGTTGTTGGACAGCATCCCCACTGTCCCTCTGGCTGAACTGGGCTGCACTGTCGAGTTGCTGATCTTGGCCCATGACTGCTTCAGTCTCACTTGTAATATGGAGGGTATCGTCAAGGTCCTTCAAGCTGCCAGGCACCTCAGCCATAAACACCTGGCACATGGGGAGGGATACGGACTCCTGGTGCGACTTCTGACTGGTATTGGAAGATACAATGAAATGACTTATGTCTTTGATCTTCTCAACCAAAATCACCGTTTTGAGATGCTGCTGAGGAAGAAAGTAGAGTCGaacACCAGATTAAAGACTGCTTTGCTGGACTACCTTAAGCGCTGTTTACCAGGGGACAGTGAGAAACACAACATGGTAGCTCTATGTTTCAGCATGCGCAGAGAGATCGGGGAGAACCATGAAGGAGCTGCTCGGACTCAACTCAAACTCATCGAGTCACAGCCTTGGGCCGTCACCCCGGAGCTCAAAAGTGGTCTGGAGAAAGTTCTCTTTTTGCTGAAAGATGCTGTGGAAAGTTACTCTAAGGACTCGTGCATGCGACAAGCTCTGCGATGTGTGAAACTGGCTAAACTCATCACCCTGCAGCTTCACTTTCTTAATCATGGACAGGACCACCGTGTTGTTAACCTGAGACCACCAGAACTACTCAATGCTATTGTGGCTCTGCCACGCTGTTACCAGGCATTTGTAGTAGCAGAGGCGTACGATTACAGTCCTGACTGGGCAGAGGTTCTGTATCAAAAAGTGATTCTGAAAGGAGATTTCTCTTACCTGGAGGAGTATAAGCAGCACAGACAACTTTCAGCCAATCTGTTTGATGAGATCTCCAAAAAaCTGTTAAAAAACAAGCCCCCAAACAGTGCCAGTCAGAACCTGAAGAAACTCCTCCAGCACTGTGAAGATGTCTACACCCACTACGAACTAGCCTACAATCATAAGTTTATCGATGTGGCCAACATGCTTCTGCAGGACTCTAAAACAAACAGTTATCTTAGTGACAGACTAAAAACCTAACACCTCATTTACACACTTCTTCCCAACagttcttttccttttcttttgtgCTTTGGTGACCTTCCATAACAATATTTCATTCACATCTTCACATCTTCCACAACAGAATTTAACAAGTATGGATTTGTGATTAGGTACAAGGGTTGTGGGTCATCTGATCAAAGGAAGTTGTTTTGTAAGcgtttaaatgaaataaatgactgtaaatgtaaatatttaagagATTAAATCGAACTTTGCTAATTTA

Function

symbol description
spg11 Acts upstream of or within axonogenesis; swimming behavior; and thigmotaxis. Predicted to be active in several cellular components, including axon; dendrite; and synapse. Is expressed in muscle; nervous system; notochord; and trunk. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2X; amyotrophic lateral sclerosis type 5; and hereditary spastic paraplegia 11. Orthologous to human SPG11 (SPG11 vesicle trafficking associated, spatacsin).

NR:

description
spatacsin isoform X3

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG:

id description
K19026 SPG11; spatacsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231194.3 True 7661 mRNA 0.51 41 23370623 23418145

Neighbor

gene id symbol gene type direction distance location
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 224093 23025246 ~ 23146530 (-)
LOC103030744 LOC103030744,LOC108428386,LOC107549661,LOC107695010,LOC106560749,LOC107745110 coding downstream 351910 22969371 ~ 23018713 (-)
LOC103029587 LOC108428387,LOC108274707 coding downstream 420601 22832764 ~ 22950022 (-)
LOC103030430 NA coding downstream 539830 22824573 ~ 22830793 (-)
LOC103028433 LOC108428361 coding downstream 636524 22720512 ~ 22734099 (-)
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding upstream 329803 23747948 ~ 23772669 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding upstream 497646 23915791 ~ 23922222 (-)
LOC103036104 LOC108432677,LOC108274966 coding upstream 507123 23925268 ~ 23974335 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 619112 24037257 ~ 24043153 (-)
LOC103033668 LOC108432685 coding upstream 732280 24150425 ~ 24156021 (-)
G75883 NA non-coding downstream 95217 23275044 ~ 23275406 (-)
G75875 NA non-coding downstream 155807 23214403 ~ 23214816 (-)
G75837 NA non-coding downstream 262737 23107379 ~ 23107886 (-)
G75824 NA non-coding downstream 374069 22996219 ~ 22996554 (-)
G75796 NA non-coding downstream 409057 22961282 ~ 22961566 (-)
G75928 fam96a,LOC107673635 non-coding upstream 566 23418711 ~ 23425345 (-)
G75937 NA non-coding upstream 68476 23486621 ~ 23486960 (-)
G75939 NA non-coding upstream 69386 23487531 ~ 23487858 (-)
G75989 NA non-coding upstream 261060 23679205 ~ 23687390 (-)
G76015 NA non-coding upstream 383400 23801545 ~ 23860428 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 4407 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 796610 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2097606 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2299377 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 2622415 20622641 ~ 20748208 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 409069 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 822753 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 1373047 24791192 ~ 24798616 (-)
G76377 NA other upstream 1496153 24914298 ~ 24920365 (-)
G76424 NA other upstream 1766064 25184209 ~ 25184469 (-)

Expression


Co-expression Network