LOC103035861 (LOC108429396)


Basic Information

Item Value
gene id LOC103035861
gene name LOC108429396
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 27002228 ~ 27003545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231200.3
AGTGTTTTTTCTCCGGGTTTTGTGCCAGTCTGTGAGCTGGCATGTAACCAGGCTGTGACcggactgctgctgctgctgctggacccGGGCTGGGGCGCAGGATGGCGGACGCGGGGAGCAACCAGAGCGCGGTGAACTCCACCACTCACTTCAGCTACCTGGAGGACATCGAAGTGTTCGCGGACGGCTCGCCGGGGCTCCGGTTCCTCGTGTCCATCGTGTACTCGTTCGTGTGCGCCGTGGGCTTGGTGGGCAACATCCTGGTGTTCTTCCTGATGAAGTCGAGGCAGAGCAAGAAGCCGTCCTCCGTCAACTTCTTCATCCTCAACCTGGCCGTCACTGACTTCCAGTTCGTGGTGGCGCTGCCCTTCTGGGCCGTGGACATCGCGCGCGACTTCAGCTGGCCGTTCGGACACGTCATGTGCAAGGTGGTGCTGTCGGTGACGGTGCTGAGCTGCTACGCGAGCGTCTTCTTCCTCACCGCCATGAGCGTCACGCGCTACTGGGCCGTGGCGTCGGCGCTCCGGGACCGCACCCGGCGCACGCGCTGCTCGGTGAAGCGCGTGAGCGCGCTGCTGTGGCTGCTGGCCTCGGTGGCCACGGTGCCCACCGTGGTGTTCTCGGCGCAGAAGCAGGTGTACGGCGAGTACCTGTGCCTCATCAGCCTGCCCGACCGCAAGTGGCTCGCGCTGTACCACTTGCAGAAGATCTTCGTGGGCTTCTTGTTCCCGCTGCTCATCGTGTGCGTGTgctacctgctgctgctgcagctcgtAAGCCTCCGCAGCATGAACAACAACTTGCCCAAGCGGCGCTCCAAGGTCACGCGCTCCGTCACCATCGTGGTGCTgtccttcttcttctgctggATGCCCAACCACGCCATCACCTTCTGGGGCGTGCTGGTCAAGCTGGACGTGGCCAACTTCGGGCAAGCCTACTACATCTGCCACACGTACGTCTACCCCGTGGCGTACTGCCTGGCGTACGCCAACAGCTGCCTCAACCCGGTCCTGTACTGCCTGACGCGGAGGGAGTTCCGCAAGATGCTCAAGGACCTGTTCTGGAGGTTCTCCTCTCCGGCGGCGGTCAACAGCTGCCGCGTGCGCCCGTACTCGGGGAGCACCAAAGGCGAGCCGTACGACAGCCAGGCGGCTATTCCGCTTAATGTGATCGACACGGAGCACTGCAGGCTCTCCGGGCTCAACGGACAGTGTGGGACGCCGAGGTGAACGCGCGCAAGCGGCGCGGAAAACGGTGCGTAAAACCCGTTGCTCGGGCTGGAAACTGGATTTTCTAACCCAGTGTTTCGTCTTGT

Function

NR:

description
PREDICTED: relaxin-3 receptor 1-like

GO:

id name namespace
GO:0038166 angiotensin-activated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004945 angiotensin type II receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231200.3 True 1318 mRNA 0.63 1 27002228 27003545

Neighbor

gene id symbol gene type direction distance location
fem1b fem1b,LOC107680899,LOC107575886,LOC107738637 coding downstream 36165 26957970 ~ 26966063 (-)
avpr1a avpr1a,avpr1ab,LOC107592260,LOC107725953 coding downstream 227838 26766093 ~ 26774390 (-)
LOC103035555 ppm1h,LOC108429443 coding downstream 285913 26689454 ~ 26716315 (-)
LOC103029104 fbln1,LOC108429449,LOC108275342 coding downstream 563940 26391015 ~ 26438288 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding downstream 867384 26091262 ~ 26134844 (-)
G76897 NA non-coding downstream 116114 26885879 ~ 26886114 (-)
G76892 NA non-coding downstream 142757 26859037 ~ 26859471 (-)
G76853 NA non-coding downstream 270174 26731779 ~ 26732054 (-)
G76851 NA non-coding downstream 272572 26729288 ~ 26729656 (-)
G76837 NA non-coding downstream 328840 26672997 ~ 26673388 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other downstream 123366 26856629 ~ 26878862 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 1700460 25282789 ~ 25301768 (-)
G76424 NA other downstream 1817759 25184209 ~ 25184469 (-)
G76377 NA other downstream 2081863 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 2203612 24791192 ~ 24798616 (-)

Expression


Co-expression Network