dennd2a (dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049)


Basic Information

Item Value
gene id dennd2a
gene name dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25726951 ~ 25778572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231573.3
GAAAAGTccagtgaaagagagtgagttagagagGAAGGCAACAGCACACAGAGAgcagcaagagagggagagataaagtTGCCTGGGGCAGAGCAGAGGTTTGTGCACAGAGCGTTCAGACTCATTTTCTTCTTGCTTTCTCAAAGCAAGTTTGAGGGGAAAAAAGGCCAACGGGGGCTTTTCTAACCGGTTCACAGCAAAGAGGAGGATTTAATCAAGGAGAGGAAAGGAAGGAAGGGAGCGCAAGGAggaaagaagaagcagaagaagtagaagaaggaCTAACTGTTCTCAGGGAAGTCACTGAGTGGATGCTGCTGCCATACTCAGTATCAGGTTTCACAAAATGAGAAACCACTACAAGAGCGCTTCTGCAGGGCTCAAGCAACCAAGCAAGGATGCCAGCTGCTAGCATCATGACCGGTGGGAGGGCTCTGCTGCTCTGTACAAACACAGAGAACTGCATCTACCAGTCAGTGAACGGGCTCCAGTGCTGTGGTCTGCAGTTTGAAGACGCTCATTCTGTGGTGTCCCAGAGGCCAGACTTGTGCAGGGTTGTGGACAGCCAGTCCCCCCTCACCCTGGACAACCTCGACTGCTGCCCAGGGAACAGCGCCATGCTCGCCCACAAGAGACCGACCAGCAGTCGTCCCATTGAGAACGGCCTGGGGAGCTGCAACAAGCCTCCCAAGGCTCCCACGGGGGTCAAGAGCACGGCCAGCATCAGAGACAAGATCTCCCAATGGGAGGGCAAAACGGATACCCCCGGACCGAACCTGCAGACGGCGGttcagaaagagacagagagtgtgagGAAGAAGGATGTTAAAACTACAGAGGTACAAAGGAGAGACAGTAAAAGAGGTTTTATCTGGGAGAGACAGGACACTGGGAAAGAGAACGGAAGCAGGATTGGAGATTCAAGGACAACTTCAGAGTCATTTACTAAGGAAAGAGAGGTGATACTAGACAAGCTGCCTGTGGGGAAAACCACTGAGAATGTCCAGGACAAAAAGTCAGTTTTGACACACATTAAGAAACTTGAGCAGGCCATGAAGGAGACTCCTTCTAAGCCTTCTTTACCAGGCAACTATTTCTGCCCGCCTTCTAAAGAGGATCAGGAGGAAGCTGAGAGGAGGGGTACGGAACCCATCTTCGGGACTCTGGACGTGGTGAGGTCCGGGAGCCGCCGCGGCCGAAACAGAGACCCTGAGAACGTGTACACTGAACCTGGGGCTCCCTCCATTAACCCTCTCCCCAAACCCCAACGTACTTTCCAGCATCACACTCCTGGATCGCTTCATGGCTCAGTGAAAGGTAGGCGGGACCTGCCACCTCTCCCCTCCATACCCCCTCCGCCCCTACCCTCCTGTCCTCCACCTCCTGGGGTCTGTCGAAGGCCTTGGGCTGAACGAGCTCGGGACAGCAATAACAGGAAATCGTACGAGTTTGAGGACCTGTTGCAGTTGTCCACTGAAGGCTGTCGAGTGGATTGGTATGCTCAGTCAAAGCTGGGGCTCACacgcactttatctgaggagaaTGTCTACGAAGATATCCTAGATCCTCCATCAAAAGAAAACCCTTATGAAGACATCGAGGTAGAAAACCGCTGTACCACAAACAAATGTCCCCTGCCCACATCGCCTTCCTCGCCTACTCCAGACACTCCAACTAAGCTCTCCTCCAAGCCTGGCTTCTTCAGGCAGAACTCAGAAAGGCGCAGCTTCAAACTCCTAGACCTGCGTAAGACGAAAGGAGATGGGGGTATAGCCTCACCTTCAAGAATAAGCCCACCTTCAACCCCCAGCAGCCCTGATGACACGCCCTGCCTCTCAGGAGACCCCTACAACCGCAGACGAAGGAAAATCCCCAAGATGGTGCTGAAGATCAATGGTATCTTTGAGGCCAGGAGGGGGAAGAAGAGGATGAAGCGGGTCTCACAGTCAACCGAATCCAGCTCAGGACGAGTGACGGATGAAAACAGTGAATCCGAGAGCGACACAGAAGAAAAACTCAAAGCTCACAGCCAGAGGCTGGTGTCAGTGCAGTCCATGCTAAAGCAGACAGGCCGATATCGCACTTTGGAGAGAGACCTGATGGACCTGCAGGAGAGGAAGCTCTTTGAGTATTTCCTAGTGGTGGCACTCCATAAAACCAAAGCAGGAGCACCTTATCTTCCTGAGGTCACCCAGCAATTTCCCCTTAAGCTTGAGAGGAGTTTTAAGTTCATGAAAGAAACTGAGGACCAGCTGAAAGTCATCCCCAAGTTCTGCTTCCCTGATGCAAAAGACTGGGCTCCTGTGGACAACTTCCCCAGTGAGACCTTCTCGTTTGTCTTGACGGGAGAAGATGGGAGCCGTAGGTTTGGTTACTGTCGACGCTTACTGCCCAGTGGGAAGGGGAGGCGTCTGCCTGAAGTCTACTGCATAGTGAGCCGGCTGGGATGTTTTGACCTCTTTTCAAAGATGTTAGACGAAGTTGAAAAGAGGCGGGCTATTTCTCCTGCTCTGGTGCAGCCCTTCATGAGGAGCGTTATGGAGGCTCCCTTCCCAGCCCCAGGCAGAACTATTACTGTGAAGAACTTCCTGCCGGGCTCAGGCACTGAGGTAATAGAGCTGTGTCGTCCCTCGGACTCTCGGCTGGAGCATGTGGATTTTGAGTGCCTTTTCTCCTCTTTGAGCCTGCGCCTCCTCCTCAGAGTCTTCGCCTCACTGTTGTTGGAGCGGAGGGTCATCTTTACCGCAGATAAACTCAGCACTCTCTCCCAGTGCTGTCATGCGGTCGTGGCCCTGCTGTACCCCTTCACATGGCAGCACACGTACATTCCAGTCTTGCCCCCCTCCATGATGGACATTGTGTGCACACCGACTCCTTTCATCGTCGGCCTGCTGTCGAGCTCTCTGCCCCGCCTCAAGGAGCTCCCCCTAGAGGAAGTCCTGGTGGTTGACCTTGGCAATAGTCGTTTCCTCCGGCAGATGGACGATGAGGACTCCATTCTACCCCACAAGCTGCAGGCCGCTCTGGAGCACGTTCTGGAGAGGAGGAGGGAGCTTGCCTGTGATCGAGGAGACCTTCCCAATGAGCACTGCTCTCTGAGCGCCGTGGTATCTGAGGCCTTTGTCCGCTTCTTCGTGGAAATTGTTGGACACTACTCACTCTTCATGGGAGGCAACGAGCGTGATGAAGAGTCCTcagcctcctcttcctcctcccccACGCCTTTGTCATTTCAGCGTGAGGCCTTCCGCAAGGCCGTGTCCTCTAAAAGTCTACGGCGCTTTCTGGAGGTCTTCATGGAGACGCAGATGTTCGCAGGGTTCGTGCAGGAGAGGGAGCTGAGGAGGCAAGGACTGAGAGGGTTGTTTGAGGTGAGGGCCCAAGATTACCTGGACACCCTGCCTGGAGCCGAGAATCGAGGGGTCAACAAGTTCCTGAAAGGTCTAGGTAACAAAATGAAGTTTCTATCCAAAAAGTGAAGTTTGCGTAAATGTGGCATGGATGATGTTCAAACGTCAAATGTGATGCACCAAACTGACTCCAGAATAAAGGAATGATCAGAAGAATCTGAAGAGTATGAAGAATAATAGAAACTGAGCACTCATGACAGCACTGAGACTGACGGGAGAAACCATAAGCTCAGCAAAAAAGACTTTTCATACATGATAATTCCAGCCGTTATTTAGACTGGATGTAGACCACTTTGCATACAATACACGTACATACTTACAAGCCAGAGAAGGAACATGGACTTGGAAATGTAGGTGTGGACCAAAGTTTAAATACCTTTGTACAGCTctctttttaatatttgaaaCATTATTGCTTATCAACTTTTTTATGTAAGAAATAGAATACAACTTCTTCTGAAACAGGGGGcgataaattaatttatattctttttagaaaaataccttttttatcttttcttctgttttctttttaactgaaacaaagcaaacaaaaaagcgTGAAGTTGGACTATTTATCATAGTATATTCCAGACGTGAGATTGTTTTGGGTTTATATGTAAAGCACTGCTGTCACTGAGCAGTCCTGTTGGGGGTGTGAATGGAAAaggaacagtaaaaaaaaataagaatgaaaACGTGGATAGCTGGAATCTGGAAATGGACAGATTGGTGGATGAAGTTCAGCAGCAGTGCACCTGTCCTGGGAATTCTGCACAGATGTCTGTAAAATATTGGACCAAATTACACAATGGACATGATTGACatgttcacttttttttttcacagaccaCTAAATTTGCCTTGAACTTGATTGTGAGAAACGTTCTGGTCTTCTGTCCAAAATGTATCATGGCTGTGATTTGACTTGtctaaaaacatatatacttATCATTGTGACTAGTTGCTGTAGGTAAACCAGTCATGTTGATGTGACCTTCCAGCCCCCCAACTGTGCCACTGGGGGTCACTACAGAGAAGACTTTGCTTTTTTCCTGTGAAGGGTTTAAGTTGATAGTAAAGGTGCCGCAAAAAGTTCTTTAAACAGTGTTACACAAGACTTGTAGTTCTCTAAATAACTATTTCAAATTGTTTAAGAACATTAACATCAAATTACATATTTAGGTTTTAAAAGGTTCTTCCCAAAAACAAATAACTCATGCATGGGTCAAATGATgaacagtgttttagaaaaaacaccaaaaccaaAATACAACTTGTTACAGAAGACACATGACTTTAGAGTTCTATAAATATTCCCAAACAAGCATGCTGAATGTTTGCAAATGCAAAGAtcagctataataataaactaatggccagtaaagtaaattatttcattaatataagtcattatttttgtgATTCTGGCACCTGCCACTGATCTCAATATATTAGGCAAGTAAACAGTCAGTTGTTGTTATGGTCTATTCAAGCTGTTTTGATAGCATCAGGAGTATTTCCATAATAATTGGCAATTGATTTtattgttatggctgatcagtgtgtTCCCCATTCCATTAGAGAGGCAGTTTCATAGCTGTTACACATTTTGTCATGAAGAACAGTttgtttaaaagtgtattaaataaagtgattttaacAGAACACTGTAGCTCACTGTAATGATGTGATAGTAACTGGGAGTAAAGCATTTgacttgtgattttttttttttttttaagtgttgaaTATTAGATATTACATAGTATTCTAGTTGTGCAATATAATTACAGGAAAAGCAAAATacaagtcaaaataaaaaaaatatccaacacATTTCTATTGGCCTGTTGATAATGGAATCCTGAGACAATGTAAATTAATCCCGGATTTACATTATGTCGAAAAATGGAGGTAAAAGGTGTTTATGTAaggtataaaataataagagtCTAAATAAAGCACTGCATGTCCA

Function

symbol description
dennd2a Enables guanyl-nucleotide exchange factor activity. Involved in retrograde transport, endosome to Golgi. Located in actin cytoskeleton.

NR:

description
PREDICTED: DENN domain-containing protein 2A isoform X1

GO: NA

KEGG:

id description
K20161 DENND2; DENN domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231573.3 True 5388 mRNA 0.46 21 25726951 25778572

Neighbor

gene id symbol gene type direction distance location
LOC103023612 NA coding upstream 26896 25680093 ~ 25700055 (+)
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding upstream 113505 25606787 ~ 25613446 (+)
LOC103046607 scamp2 coding upstream 380904 25327566 ~ 25346047 (+)
LOC103027043 LOC108429467,LOC108275406 coding upstream 410636 25313291 ~ 25316315 (+)
LOC103045999 LOC108429466,LOC106561822 coding upstream 414788 25302235 ~ 25312163 (+)
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding downstream 17866 25796438 ~ 25830701 (+)
mansc4 mansc4 coding downstream 60780 25839352 ~ 25843928 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding downstream 81957 25860529 ~ 26053114 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding downstream 458208 26236780 ~ 26286442 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding downstream 696935 26475507 ~ 26484181 (+)
G76536 NA non-coding upstream 13101 25713432 ~ 25713850 (+)
G76552 NA non-coding upstream 71954 25652587 ~ 25654997 (+)
G76543 NA non-coding upstream 80473 25640587 ~ 25646478 (+)
G76541 NA non-coding upstream 81816 25636971 ~ 25645135 (+)
G76540 NA non-coding upstream 83028 25636480 ~ 25643923 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding downstream 308617 26087189 ~ 26093193 (+)
G76655 NA non-coding downstream 367053 26145625 ~ 26146752 (+)
G76833 NA non-coding downstream 792608 26571180 ~ 26571399 (+)
G76838 NA non-coding downstream 901068 26679640 ~ 26679890 (+)
LOC111193118 NA non-coding downstream 905316 26683888 ~ 26685678 (+)
G76464 NA other upstream 430483 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 445580 25271256 ~ 25281371 (+)
G76423 NA other upstream 542219 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 722436 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 743237 24974941 ~ 24983714 (+)

Expression


Co-expression Network