mrps35 (mrps35)


Basic Information

Item Value
gene id mrps35
gene name mrps35
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25844617 ~ 25857522 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231579.3
AGTTGTAGTGCTCGCATGATTTGGAGATCGGTAGACCTGCGCAGGACTGCGCTGCGCACGCTactgcagctccagctcaaCATGGCGGCCTCCACATTTTGCCCTGTGCTTTTGCCCTTAAGTAGAATAAACTGCAAACTTAACGGAATTTACACacttattttacttaataaaacaGCCGCGTACTCCACAGGACTGTCAGTAAAAAAGACCGGCGCTAAAACAGgtttgccacagAGAGGTGGTAAGGAACTAAGGAGGCAGATAAagGTCTTACAACCAAGGACTGAGAGAATGGCCGTGGACCAGGACTGGACTGCAGTGTACCCCACTGCGGCCTCCTTCAAGGCAGATGCTGTTCCACTGCCTGTGCGGATGGGGTACCCTGTTAAAAAAGGGGTGCCTCCTTCAAAGAAGGGCAATCTGGAACTTTTAAAGATTCCAAACTTCCTGCATTTGACTCCAAATGCTATCAAGAAACAATGTGAAGCCCTTAAGCCATTTTGCACAGAATGGCCTGCTGCTCTGGATTCTGATGAAAAATGTGAGAAGCATTTTCCCATCCAGGTGCAAAAGAAGGACTATGTATTTGCTGGACCATCACTGAGGCATCCAGATGCTAGAATTGTCACACTCACTGTCAAGCTCTCCAGTTTGAATCTAGATGATCATGCAAGGAAGAAGATGATCAAACTAAGTGGAGAGCGTTACAACAAAGACACGGACACACTCACCATCACCGCTGACAGTTGTCCACTGAAACAGCAGAACCATGACTACGCAATGTACATGCTCACTGTTCTATACCATGAATCCTGGAAAATTGAGGCATGGGAGAAAGAAAAGACGCGTGCGGATATGGAGGAGTATGTTTGGGAGGATAGCCCATCCCAGAAGAACATTCTGGAAACCTTGTTGCGCATTCGTCCACTCAGTGAGCAGCAGGAGGAAGGAGAAGTGCGGGAGGAGTTGCTGGGTCGAGAGGAGGTGCAAGAATACAAAGACTCTGTAACCAAACTGAAAAACGAGGGTGAGACTGAGGGCAACATGCAGCAGTACAAAGAGGCGGTGAAGAAACTTCTCAGTATCTGAAGAACTTTGTGAcctgtctgagagagagagacagggtgaAAATGAGCTGCACTGAATATAGAGTGCAGATCTAAGCTCAGACTTCTTAATTCAACAGATATGGAGAAGCTGATCTGAAACATAACTCAGTCTCATTTCAACCAGTTAAGAACACCCACCTTTCCCCCTTCCCCCATATTTTCAATGAGTTCACTCTCCTATGCACTTGCACAGGGTTTCAACATTGACTAACCATTAATACAGATgtcctgtctttttttctgaacagtgaatatactttttaaagtaaagttgtTGTCTGGAAAATACATGGTGGTcttgtttatgtatttacaataaatataataaaatgttcgGTGCTCATAAACCACA
>XM_015600836.2
AGTTGTAGTGCTCGCATGATTTGGAGATCGGTAGACCTGCGCAGGACTGCGCTGCGCACGCTactgcagctccagctcaaCATGGCGGCCTCCACATTTTGCCCTGTGCTTTTGCCCTTAAGTAGAATAAACTGCAAACTTAACGGAATTTACACacttattttacttaataaaacaGCCGCGTACTCCACAGGACTGTCAGTAAAAAAGACCGGCGCTAAAACAGgtttgccacagAGAGGTGGTAAGGAACTAAGGAGGCAGATAAagCAGGTCTTACAACCAAGGACTGAGAGAATGGCCGTGGACCAGGACTGGACTGCAGTGTACCCCACTGCGGCCTCCTTCAAGGCAGATGCTGTTCCACTGCCTGTGCGGATGGGGTACCCTGTTAAAAAAGGGGTGCCTCCTTCAAAGAAGGGCAATCTGGAACTTTTAAAGATTCCAAACTTCCTGCATTTGACTCCAAATGCTATCAAGAAACAATGTGAAGCCCTTAAGCCATTTTGCACAGAATGGCCTGCTGCTCTGGATTCTGATGAAAAATGTGAGAAGCATTTTCCCATCCAGGTGCAAAAGAAGGACTATGTATTTGCTGGACCATCACTGAGGCATCCAGATGCTAGAATTGTCACACTCACTGTCAAGCTCTCCAGTTTGAATCTAGATGATCATGCAAGGAAGAAGATGATCAAACTAAGTGGAGAGCGTTACAACAAAGACACGGACACACTCACCATCACCGCTGACAGTTGTCCACTGAAACAGCAGAACCATGACTACGCAATGTACATGCTCACTGTTCTATACCATGAATCCTGGAAAATTGAGGCATGGGAGAAAGAAAAGACGCGTGCGGATATGGAGGAGTATGTTTGGGAGGATAGCCCATCCCAGAAGAACATTCTGGAAACCTTGTTGCGCATTCGTCCACTCAGTGAGCAGCAGGAGGAAGGAGAAGTGCGGGAGGAGTTGCTGGGTCGAGAGGAGGTGCAAGAATACAAAGACTCTGTAACCAAACTGAAAAACGAGGGTGAGACTGAGGGCAACATGCAGCAGTACAAAGAGGCGGTGAAGAAACTTCTCAGTATCTGAAGAACTTTGTGAcctgtctgagagagagagacagggtgaAAATGAGCTGCACTGAATATAGAGTGCAGATCTAAGCTCAGACTTCTTAATTCAACAGATATGGAGAAGCTGATCTGAAACATAACTCAGTCTCATTTCAACCAGTTAAGAACACCCACCTTTCCCCCTTCCCCCATATTTTCAATGAGTTCACTCTCCTATGCACTTGCACAGGGTTTCAACATTGACTAACCATTAATACAGATgtcctgtctttttttctgaacagtgaatatactttttaaagtaaagttgtTGTCTGGAAAATACATGGTGGTcttgtttatgtatttacaataaatataataaaatgttcgGTGCTCATAAACCACA

Function

symbol description
mrps35 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; immature eye; and optic tectum. Orthologous to human MRPS35 (mitochondrial ribosomal protein S35).

NR:

description
28S ribosomal protein S35, mitochondrial-like

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17413 MRPS35; small subunit ribosomal protein S35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231579.3 False 1464 mRNA 0.45 8 25844617 25857522
XM_015600836.2 True 1467 mRNA 0.45 8 25844617 25857522

Neighbor

gene id symbol gene type direction distance location
adck2 adck2,LOC107669038 coding downstream 182992 25655765 ~ 25661625 (-)
bbs4 bbs4,LOC107754319,LOC107701057 coding downstream 212846 25615420 ~ 25631771 (-)
LOC103047119 neo1,LOC108275206 coding downstream 282670 25351525 ~ 25561947 (-)
mpi mpi,LOC106560745,LOC106584640 coding downstream 517064 25317126 ~ 25327553 (-)
LOC103023960 kiaa1644,LOC108274641 coding downstream 743517 25013293 ~ 25101100 (-)
cdkn1b NA coding upstream 215575 26073097 ~ 26077993 (-)
yars2 yars2 coding upstream 221854 26079376 ~ 26085001 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding upstream 233740 26091262 ~ 26134844 (-)
LOC103029104 fbln1,LOC108429449,LOC108275342 coding upstream 533493 26391015 ~ 26438288 (-)
LOC103035555 ppm1h,LOC108429443 coding upstream 831932 26689454 ~ 26716315 (-)
G76676 NA non-coding downstream 13920 25762522 ~ 25830697 (-)
G76595 NA non-coding downstream 130697 25713483 ~ 25713920 (-)
G76590 NA non-coding downstream 199460 25636972 ~ 25645157 (-)
LOC111193116 NA non-coding downstream 203484 25639947 ~ 25641133 (-)
LOC111193115 NA non-coding downstream 205484 25637072 ~ 25639133 (-)
G76701 NA non-coding upstream 220916 26078438 ~ 26079115 (-)
G76706 NA non-coding upstream 229830 26087352 ~ 26102108 (-)
G76707 NA non-coding upstream 288107 26145629 ~ 26146804 (-)
LOC111193117 NA non-coding upstream 289626 26147148 ~ 26171101 (-)
G76727 NA non-coding upstream 364504 26222026 ~ 26222578 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 542849 25282789 ~ 25301768 (-)
G76424 NA other downstream 660148 25184209 ~ 25184469 (-)
G76377 NA other downstream 924252 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 1046001 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 1584087 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 999107 26856629 ~ 26878862 (-)

Expression


Co-expression Network