yars2 (yars2)


Basic Information

Item Value
gene id yars2
gene name yars2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26079376 ~ 26085001 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231580.3
CTCTACAGTAGGGGGCAGCAGTGATCTGCGACCCCTGATTCAGCCCGCCTCCAAACATGGCAGCGTCCTGTGTGTGGAGCGCGTGCGGAGGCCGGCAGGTCCGGTGGAGCAGGTGGAGCTCGGTTCTGGGCTCGGGACGGCTCTCTGTGCTGCTCCGGGCTCCGTTTCGCTGCTCCGCTGCGGCTCGGGACTCGCTGCTGTCGGCGCTGCACCGGCGCGGCGTGCTGAAGGACTGCTTCCCCGAGAGCGCGGCTCAGCACGAGCTGCCCCGGCTCCTGCAGTCCGGCCCGCAGACCGTGTACTGCGGCTTTGACCCCACGGCCGACAGCCTGCACGCGGGAAACCTGCTGGCCCTCATCGGCCTGCTGCACTTCCGCAGCGCCGGGCACAACGTGCTGGCGGTGGTCGGCGGGGCCACGGCGCAGGTGGGTGACCCGAGCGGGAAACTGAGGGAGCGGGAGAGGCTCTCCTCCGCCGCCGCCGAGCACAACACCCGCAGCATCACCGACAGTCTGTGGAGGATCTTCACCAACCACGAGCTGCTCTTCTGCCCGGAGTCCGCGCGCCTGGGCACCGTCAGCGTGCTGAACAACGCGGGCTGGTACCGGGACTGGAGGGTGGTGGACTTCCTGAGCGAGGTGGGCCGGTATTTCCGCATGGGGACGCTGCTGAGCAGACACAGCGTGCAGACCCGCCTGAAGAGCGCCGAGGGCATGAGCCTCACCGAGTTCAGCTACCAGCTCTTCCAGGCCTACGACTTCTACCACCTGCACCAGCTGCACGGCTGCAGACTCCAGCTGGGGGGCAGCGACCAGCTCGGAAACCTCATGACCGGACACGACTTCATCCAcaaAAAGACAGGAGAGGAAGTTTATGGCCTAACTGTCCCACTGGTCACCACAACAATGGGAGATAAGCTGGGGAAGACAGCGGGGAATGCTGTGTGGCTGAACAGAGACAAAACATCTCCCTTTGAGTTCTACCAGTACTTCCTCAGGCTACCTGACAGCACAGTGGAAAGCTACATTAAACTGTTCACCTTCTTGCCGCTGGCGGAGGTGGAGAAGGtgatggagcagcagagacggGATCCAGGCAAGAGAACGGCCCACAAACGACTAGCTGCTGAGGTTACCAAACTGGTACATGGCAAGGATGGTCTAGAAACTGCCAAAAGGTGCACTAATGCTCTGTATAACAGTAGCATTGAAGCTCTGGAGCAGATGGATGATGTGGAGCTGAAGGAGTTGTTCAGAGAAGCTCCGTTTAAGGAGTTCTTTTTGGAGCCAGGCACCACAGTACTGGATGCCTGTCGGAGGGCCCAAGTCATTCCTGAAGGACCTAAAGggTTTCAAATGATAACAGACGGCGGTGTTTGGTTCAACCACCAGAGGGCATCCAACCCGGAGCAGGTCCTGGTTCCCGGACAGCATATACTTTCCAATGGACTCAGTTTGATCAGAGTGGGCAAGAAGAACTATTACATCCTGAAGTGGCTCAGTATGTGATTTACTTACACCGAAGCGAAtgtctatatttatttaaagaaatatggATAAAAGATGCAGTGTGCTGCACAATGACTAACAATCCATACACAAATCGAATTATGCGGGACCCACAAATATTTTGGGGCGTGTCAGACCACTGGCAGGAGGACAAGCAAAACTACACTAAATCCTGAGTTGATATAGAGAAACAGACTGGCAGAGGATAAAAAGGAATGAAAGAGGAGAGTGTGCACATTTGTGTCTTTACACACTTGTGTGCACGTATTTCAGAAATAGTTGtactgtttgtgtgtatatgtaattCTGAATCACACCACCAGATGTCAGTAAAGGCCTTTTCCATTTTTTGTA

Function

symbol description
yars2 Predicted to enable tyrosine-tRNA ligase activity. Predicted to be involved in tRNA aminoacylation. Predicted to act upstream of or within tyrosyl-tRNA aminoacylation. Predicted to be active in cytosol and mitochondrion. Human ortholog(s) of this gene implicated in myopathy, lactic acidosis, and sideroblastic anemia 2. Orthologous to human YARS2 (tyrosyl-tRNA synthetase 2).

NR:

description
PREDICTED: tyrosine--tRNA ligase, mitochondrial

GO:

id name namespace
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01866 YARS, tyrS; tyrosyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231580.3 True 1862 mRNA 0.56 5 26079376 26085001

Neighbor

gene id symbol gene type direction distance location
cdkn1b NA coding downstream 1383 26073097 ~ 26077993 (-)
mrps35 mrps35 coding downstream 221854 25844617 ~ 25857522 (-)
adck2 adck2,LOC107669038 coding downstream 417751 25655765 ~ 25661625 (-)
bbs4 bbs4,LOC107754319,LOC107701057 coding downstream 447605 25615420 ~ 25631771 (-)
LOC103047119 neo1,LOC108275206 coding downstream 517429 25351525 ~ 25561947 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding upstream 6261 26091262 ~ 26134844 (-)
LOC103029104 fbln1,LOC108429449,LOC108275342 coding upstream 306014 26391015 ~ 26438288 (-)
LOC103035555 ppm1h,LOC108429443 coding upstream 604453 26689454 ~ 26716315 (-)
avpr1a avpr1a,avpr1ab,LOC107592260,LOC107725953 coding upstream 681092 26766093 ~ 26774390 (-)
fem1b fem1b,LOC107680899,LOC107575886,LOC107738637 coding upstream 872969 26957970 ~ 26966063 (-)
G76701 NA non-coding downstream 261 26078438 ~ 26079115 (-)
G76676 NA non-coding downstream 248679 25762522 ~ 25830697 (-)
G76595 NA non-coding downstream 365456 25713483 ~ 25713920 (-)
G76590 NA non-coding downstream 434219 25636972 ~ 25645157 (-)
G76706 NA non-coding upstream 2351 26087352 ~ 26102108 (-)
G76707 NA non-coding upstream 60628 26145629 ~ 26146804 (-)
LOC111193117 NA non-coding upstream 62147 26147148 ~ 26171101 (-)
G76727 NA non-coding upstream 137025 26222026 ~ 26222578 (-)
G76744 NA non-coding upstream 249392 26334393 ~ 26334651 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 777608 25282789 ~ 25301768 (-)
G76424 NA other downstream 894907 25184209 ~ 25184469 (-)
G76377 NA other downstream 1159011 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 1280760 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 1818846 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 771628 26856629 ~ 26878862 (-)

Expression


Co-expression Network