cdkn1b


Basic Information

Item Value
gene id cdkn1b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26073097 ~ 26077993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231581.3
ATCATTTTTCTCTCCACTCAGCCTCCCCTCTATCGCCATATTGGGCACCGAAAAGCCTGCTGTTATTTTCTTCCCTTTTACTACGAGGCGAGGCTGACAGGAGTGCGCACTTCGTCTCGCTTTGACTGCGCTTTGTTTTGATGGTCTGTGGAGGGGAATTTCTCTCGGCGTGTGTTTTTTCCTCGCGCTCTCACTCTTGCAGAGCATGCACGCGCTTGTGGCGAGTACAGCGTGTGTGAGCGTGAGCGTGCGTGTTTTTCTGGATgcctgctgctgttgttgtgcAGCGCGTTGAGCCTGGAGGAAAGCGCCTGTTTTGAGTCGCTGTTTGTATCGGTtattttgtggggttttttttttttttttttcacacgccaaaaaataaataaaaataaaagaacgaTGTCTAATGTGCGTCTCTCGAACGGAAGCCCGACCCTGGAGAGGATGGACAACCGGCCGCCCGACCAGCCGAAGCCGAGCGCCTGCAGGAGCCTGTTCGGGCCGGTGGATCACGAAGAGTTAAAGAGGGAGTTAAAGGGACACTTGATGGCGATGGAGAAGGCGTCGACCGAGTCGTGGAACTTCGACTTCTCCAACTTCACGCCTCGGCGCGGCCGCTACCTGTGGTCCCCCGTGGACAGCACGGACTTACCGGGCTTCTACAGCTCGACAGGGAATAAGAGCGTGGATGTAAACGGGAATCACGAGCGGCTCGCGGAGCGGAGCGAGACCCAGACCGAAAGGAGAGACCCGCAACAGAACGTCAAGAACAAGAGAAAAAGACGGTCGTCCCTCGATTCCTCGTGTCAGACTAAACGCTCGCGCACCTGTGTGGATGAAGTCTCGTGCCGGCCGGGTTTGACCCAGGCGCTCGATCACACACCCGTGAAGTCGAGCCCCCAGCGGCAGACGTGAGCGAGCCGTGTTGAGAGCTGAAGACTTTCTCTCCCTTCTGACGGCTTCAGTGCTTGGCGAATTAAGAATTCGAGGAGAGAGGAACGATAGGAAAGCAAAAGCATATCGGCTGTAAGAGTggagagactgcacaagcactgaaacaaaaacacaaaagttcTGGCACTAAAAAAAGCAACTGCCTCAAAAGCAGTGTATGTAGCAGTGTGCAATTAGGTTTAATCTccttttttgctcatttttcttttcttactaCCTGTGTATATACTTTTTCATATGTAGcacataatacattttttgtttgattttttttttgacgagTAGGTGTGGATTTGATTTGACTTGAAGAGTTGCAATGTATAGGATTCAAAATCTTTCCAAAATGCTGTTTGTTACTTCTCTCTATTTTTGAAGGCCATGTGTCCCATCTTACTTGTGTTCTCCTGTCACTGAACTCCATCATAATGTACATGCATGCTTTAACAGCTGTGTGTACCTAATATTATTCAGGTGAGACATGGTACAGAAGTTGCCTTGCCTCCCAAAGATCAGTTTTGATCCTTGCCTCTCAGTTTGCTCTCTCAAAACGGCACCACAGAAAAAGGTCACAATGCATTATTCTCTGTAAAAAAGTGCAGAGGTTATCTAAAGTCTGTTAACGAGTATACGTAATTTATCTGTCAGATTTTGACTTGGACGGCTGACTAATATTATTCAGTTCAGTACACAAGTTCAAAACAAGTAGCATGAACCAGTATTAACACCAGGCTAGGCACTTGCTGAGAGACATATGCGTCCCTcatatattgttaaattatttttctttaatatgtATCAGGATTACTTGTATTTTGAGTGAAAATTtctactgatttgtttattttatattttctcattCCTTACGTTTCCTTCAGTTCAACACCACCGTTTGTTTTTTCCTCCATTTGGTGTAATATCAGGAAAATAGCCTCTCTCAGCTATATGCACCTACACTCCCATTTGATTCTGTGGTTAACTGATGCATGAGTATATTTATAGAAAAACAAATTCATGTTAATATTTCAGCAGTCCACACAGcctgtgtatttgtttaaacttTGAAGTGTACCTCTGTACATAACtgtaaaaacactgagaaaattaaaactaacttatttatgtcaattttattttattttattttttttttaatctaaaaaatggGTTTTGTCATGGTTATCCAAAGTGGCAtttgagttatttttttaaatgcttcctTTTCTTggtagggattttttttttctccagaaaaTAATGTTAACAAATTGTGTAAGGTTGCAAACTGAGcctgatggaaaaaaaataaagacaaaatgcagtatgtgcattttttgtactttgttGGATAAAAGATGTACTgcaatcaattaaaataatttaattattata

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042326 negative regulation of phosphorylation biological_process

KEGG:

id description
K06624 CDKN1B, P27, KIP1; cyclin-dependent kinase inhibitor 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231581.3 True 2346 mRNA 0.42 3 26073097 26077993

Neighbor

gene id symbol gene type direction distance location
mrps35 mrps35 coding downstream 215575 25844617 ~ 25857522 (-)
adck2 adck2,LOC107669038 coding downstream 411472 25655765 ~ 25661625 (-)
bbs4 bbs4,LOC107754319,LOC107701057 coding downstream 441326 25615420 ~ 25631771 (-)
LOC103047119 neo1,LOC108275206 coding downstream 511150 25351525 ~ 25561947 (-)
mpi mpi,LOC106560745,LOC106584640 coding downstream 745544 25317126 ~ 25327553 (-)
yars2 yars2 coding upstream 1383 26079376 ~ 26085001 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding upstream 13269 26091262 ~ 26134844 (-)
LOC103029104 fbln1,LOC108429449,LOC108275342 coding upstream 313022 26391015 ~ 26438288 (-)
LOC103035555 ppm1h,LOC108429443 coding upstream 611461 26689454 ~ 26716315 (-)
avpr1a avpr1a,avpr1ab,LOC107592260,LOC107725953 coding upstream 688100 26766093 ~ 26774390 (-)
G76676 NA non-coding downstream 242400 25762522 ~ 25830697 (-)
G76595 NA non-coding downstream 359177 25713483 ~ 25713920 (-)
G76590 NA non-coding downstream 427940 25636972 ~ 25645157 (-)
G76701 NA non-coding upstream 445 26078438 ~ 26079115 (-)
G76706 NA non-coding upstream 9359 26087352 ~ 26102108 (-)
G76707 NA non-coding upstream 67636 26145629 ~ 26146804 (-)
LOC111193117 NA non-coding upstream 69155 26147148 ~ 26171101 (-)
G76727 NA non-coding upstream 144033 26222026 ~ 26222578 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 771329 25282789 ~ 25301768 (-)
G76424 NA other downstream 888628 25184209 ~ 25184469 (-)
G76377 NA other downstream 1152732 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 1274481 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 1812567 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 778636 26856629 ~ 26878862 (-)

Expression


Co-expression Network