LOC103026929 (LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395)


Basic Information

Item Value
gene id LOC103026929
gene name LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26236780 ~ 26286442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231584.3
aagagagagagagagagagagagagagaaacagaggaaacTTGAGAAGGCACGGCAGGTTCACCTGAGCAGGCGAAGGGACTGGAAGGAAACATAACTCCTTTTGAAACAAAGAGCGCGCGCTGGAGGAATGCAGCCGTGACCTCGCGCTCTACCTCGCTCCACTCCAAATCCTCACGTTgcgcacaaaaacacacacttacacacacgcacCGCGCGCGCGCGCACCCGCGAGCTCCAAGAGTTTGCGCCCTTTCAGCATGGCTCTGGACGTCTCGCGCCGGACCACCAGAAGCGCGCTCGCGCCGAGCAGATGCCGCCACTGTAGCCGCACGGGCTGAACGCATGCCCAGTGGACGAACCATGCCCACCCCGCCAGTGAGTCTGCGGACCTGCAACCTGCTGCTCTGCTTCGGCATCGTCTACCTGAGACTCGGGGCCCTTTCCTCCGTGGTGGCCCTGGGTGCCAACATCATCTGCAATAAGATTCCGGGCCTGGCTCCTCGCCAGCGGGCCATCTGCCAAAGCCGCCCAGACGCCATCATCGTAATAGGTGAAGGAGCTCAGCTGGGCATCAATGAGTGTCAGTACCAGTTCCGCTACGGCCGCTGGAACTGCTCGGCCCTGGGGGAGCGCACAGTCTTTGGCCAGGAGCTACGAGTAGGCAGCAGGGAGGCAGCATTCACCTACGCCATCACAGCCGCAGGGGTGGCCCACGCAGTCACAGCAGCCTGCAGCCAGGGCAACATGAGCCACTGTGGCTGCGACCGCGAGAAGCAGGGCTACTACAACCAGGAGGAAGGCTGGAAGTGGGGCGGCTGCTCAGCTGACATCAAATATGGAATTGAGTTCTCCCGGAGGTTCGTGGACGCTCgcgagattaaaaaaaatgctcgcCGGCTGATGAACCTTCACAACAACGAAGCAGGAAGAAAGGCGCTGGAGGAGCGGATGAAGCTGGAGTGTAAGTGTCATGGCGTGTCGGGGTCCTGCACCACTAAGACATGCTGGACCACCCTACCAAAATTTAGGGAGATCGGCTATATGCTGAAGGACAAGTACAACAAAGCAGTTCACGTGGAGGTGGTCCGGGCCACCAGACTGCGCCAGCCCACCTTTCTGAAGGTGAAGAAGACGCACGGTTACCAAAAACCCCTGGAGACAGACCTGGTGTACATTGAACGCTCGCCGAATTACTGCGAGGAGGACGCTAAGACCGGCAGCGTGGGGACACAGGGGAGGCTGTGTAACCGAACGTCTCCGCACACAGACGGCTGCGACCTCATGTGCTGCGGCCGAGGCTACAACACACACCAGTACACCAAGGTGTGGCAGTGTAACTGCAAGTTTCAGTGGTGCTGCTTCGTCAAATGCAACACTTGTAGTGAGAGGACAGAGGTGTTCACCTGCAAGTGAGCAGGTGTGGACTGGGGGAGGGAACTTGGAGACCTTGGAGAACCCAAGGAATGAAAAGAGCTAATATGTTTTGGAATATCACGGAATGGGAATGGAATGGGAATGGTACACTATCAGCTCTTCATGGCATCGTTTTGCACAGCAGACTTTTTATATTTGCTTTCCAGTAGAGGTTAAATGCTAAACTCTGTCAGTAGGTTTAAGCCCAGCTCTCTAAGCTGAGTTTAACTACCAGAAGCTCATGCACTGATGTATCCTCACTGACTCGAAAGAAAGGACTTCAGGATACATGCCGTGCACTGGACCCGAGCATTGCATTCTGGGATCTGTACATTTTCCATTCCAAAGGAAGCTCACCAACAAAACGCAAAAAGGAGGCTGCAAGAATTTCAGTACTGGAACCAGTGACTGgaactgtttaaactgttaaaaacagGACTGGTTACGTTAACCTGACTTATATataacagagacagagagagaaagagaaagaaagaggactGAACAATGAGGAACAGACATTGTAGCTCACAATCTTAAGCTCTGTAAAGATGAAAATGGAACTGAACTACAGAATGCGGACAGTGCAGACTGTAAAACGGAGACGTTGCTACAAGAAGCCTCCTACTGCCAACTGGAATGTGGTGGAATATGTTAGCTGTCCAGTCACACTGGAACTGTCTGtttgaacactgaaaaaatattttttttatttatgttatagtctcttaaaaaagcaaagcaCTAACGGGTagaaatgtcttattttttactaagtgtaaagaaaaacagagagatggATAAAAAGAACTCTTTGTAGAAACTCATGACTGAAGGTGCGCGTCTTCTAAACTTAAGGCCCCCAGGTTCTCTGACAGAAAcgtttttaatctaaaatggTTTAAGCATTAACGGTGTGTTGACTTCAGAAACCACTTTTTTAGCACAGTTTACGGTTTACTTATTTAACATTGGTTCTACTTTGCTGTAGCCTAGCCTTAGTGTGCAGTAAAGTATGCACTACAATTTGGATCATTCTTCATTTTGAAACTTAGAAAGTAGCAAACAAAAagtttttatgttaaataaaaaagtcaaattatTTTAAGGTCTTTGCTCAACtcatgaaattaaaaatgttgCTGGATGTGTTGTCGAGTGCTGCactgatatattttttctattctgGTACGTTGCAaatgaaactaaataaatatgcatTTGACTGAC
>XM_007231585.3
CCCGGATCTCCGGCGAGAGCGCGCGCCGGCGAGACACGCTTTCTCCATAACGCACGATTCTTAAAAAGCCTTTATTCTTCCAGCAGTAAATCCGCGCGCTGCGCCGCGAGATTCCGCTGAacacagtgagagacagtgagagagtgagagagagaaagagacagtgagagagttaaaggaacagtgaaagagtgaagaaaagagagaacagagagaaagcgagagcgTGTGTTTCGTCTGAACGCAAGGGGGGACTAAACGCGCGTCGGGAATACAGGAGTTTTGAAGCTGGCTCTTTCTCTCGCCATCGATCAGAGAGGACAAACGCGGCCATTTGCTCCATGTCACCATGATCGTGCTGTCGTCGCGCAGTGTCCTGCTGTCTGTCTACTACCCGCAGATCTTCCTCATCCTCACCAGCGGCAGCTACCTGGCCCTTTCCTCCGTGGTGGCCCTGGGTGCCAACATCATCTGCAATAAGATTCCGGGCCTGGCTCCTCGCCAGCGGGCCATCTGCCAAAGCCGCCCAGACGCCATCATCGTAATAGGTGAAGGAGCTCAGCTGGGCATCAATGAGTGTCAGTACCAGTTCCGCTACGGCCGCTGGAACTGCTCGGCCCTGGGGGAGCGCACAGTCTTTGGCCAGGAGCTACGAGTAGGCAGCAGGGAGGCAGCATTCACCTACGCCATCACAGCCGCAGGGGTGGCCCACGCAGTCACAGCAGCCTGCAGCCAGGGCAACATGAGCCACTGTGGCTGCGACCGCGAGAAGCAGGGCTACTACAACCAGGAGGAAGGCTGGAAGTGGGGCGGCTGCTCAGCTGACATCAAATATGGAATTGAGTTCTCCCGGAGGTTCGTGGACGCTCgcgagattaaaaaaaatgctcgcCGGCTGATGAACCTTCACAACAACGAAGCAGGAAGAAAGGCGCTGGAGGAGCGGATGAAGCTGGAGTGTAAGTGTCATGGCGTGTCGGGGTCCTGCACCACTAAGACATGCTGGACCACCCTACCAAAATTTAGGGAGATCGGCTATATGCTGAAGGACAAGTACAACAAAGCAGTTCACGTGGAGGTGGTCCGGGCCACCAGACTGCGCCAGCCCACCTTTCTGAAGGTGAAGAAGACGCACGGTTACCAAAAACCCCTGGAGACAGACCTGGTGTACATTGAACGCTCGCCGAATTACTGCGAGGAGGACGCTAAGACCGGCAGCGTGGGGACACAGGGGAGGCTGTGTAACCGAACGTCTCCGCACACAGACGGCTGCGACCTCATGTGCTGCGGCCGAGGCTACAACACACACCAGTACACCAAGGTGTGGCAGTGTAACTGCAAGTTTCAGTGGTGCTGCTTCGTCAAATGCAACACTTGTAGTGAGAGGACAGAGGTGTTCACCTGCAAGTGAGCAGGTGTGGACTGGGGGAGGGAACTTGGAGACCTTGGAGAACCCAAGGAATGAAAAGAGCTAATATGTTTTGGAATATCACGGAATGGGAATGGAATGGGAATGGTACACTATCAGCTCTTCATGGCATCGTTTTGCACAGCAGACTTTTTATATTTGCTTTCCAGTAGAGGTTAAATGCTAAACTCTGTCAGTAGGTTTAAGCCCAGCTCTCTAAGCTGAGTTTAACTACCAGAAGCTCATGCACTGATGTATCCTCACTGACTCGAAAGAAAGGACTTCAGGATACATGCCGTGCACTGGACCCGAGCATTGCATTCTGGGATCTGTACATTTTCCATTCCAAAGGAAGCTCACCAACAAAACGCAAAAAGGAGGCTGCAAGAATTTCAGTACTGGAACCAGTGACTGgaactgtttaaactgttaaaaacagGACTGGTTACGTTAACCTGACTTATATataacagagacagagagagaaagagaaagaaagaggactGAACAATGAGGAACAGACATTGTAGCTCACAATCTTAAGCTCTGTAAAGATGAAAATGGAACTGAACTACAGAATGCGGACAGTGCAGACTGTAAAACGGAGACGTTGCTACAAGAAGCCTCCTACTGCCAACTGGAATGTGGTGGAATATGTTAGCTGTCCAGTCACACTGGAACTGTCTGtttgaacactgaaaaaatattttttttatttatgttatagtctcttaaaaaagcaaagcaCTAACGGGTagaaatgtcttattttttactaagtgtaaagaaaaacagagagatggATAAAAAGAACTCTTTGTAGAAACTCATGACTGAAGGTGCGCGTCTTCTAAACTTAAGGCCCCCAGGTTCTCTGACAGAAAcgtttttaatctaaaatggTTTAAGCATTAACGGTGTGTTGACTTCAGAAACCACTTTTTTAGCACAGTTTACGGTTTACTTATTTAACATTGGTTCTACTTTGCTGTAGCCTAGCCTTAGTGTGCAGTAAAGTATGCACTACAATTTGGATCATTCTTCATTTTGAAACTTAGAAAGTAGCAAACAAAAagtttttatgttaaataaaaaagtcaaattatTTTAAGGTCTTTGCTCAACtcatgaaattaaaaatgttgCTGGATGTGTTGTCGAGTGCTGCactgatatattttttctattctgGTACGTTGCAaatgaaactaaataaatatgcatTTGACTGAC

Function

NR:

description
PREDICTED: protein Wnt-7b isoform X2

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00572 WNT7; wingless-type MMTV integration site family, member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231584.3 True 2645 mRNA 0.49 4 26236780 26286442
XM_007231585.3 False 2641 mRNA 0.48 4 26247566 26286442

Neighbor

gene id symbol gene type direction distance location
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding upstream 183666 25860529 ~ 26053114 (+)
mansc4 mansc4 coding upstream 392852 25839352 ~ 25843928 (+)
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding upstream 406079 25796438 ~ 25830701 (+)
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding upstream 458208 25726951 ~ 25778572 (+)
LOC103023612 NA coding upstream 536725 25680093 ~ 25700055 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding downstream 189065 26475507 ~ 26484181 (+)
LOC103027405 LOC108429445,LOC108274519,LOC107558592,LOC107668651 coding downstream 204173 26490615 ~ 26514021 (+)
mon2 mon2 coding downstream 228747 26515189 ~ 26570715 (+)
LOC103031630 LOC108412538 coding downstream 605434 26891876 ~ 26958394 (+)
LOC103032468 cln6,LOC108412537 coding downstream 682194 26968636 ~ 26982403 (+)
G76655 NA non-coding upstream 90028 26145625 ~ 26146752 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding upstream 143587 26087189 ~ 26093193 (+)
G76536 NA non-coding upstream 522930 25713432 ~ 25713850 (+)
G76552 NA non-coding upstream 581783 25652587 ~ 25654997 (+)
G76543 NA non-coding upstream 590302 25640587 ~ 25646478 (+)
G76833 NA non-coding downstream 284738 26571180 ~ 26571399 (+)
G76838 NA non-coding downstream 393198 26679640 ~ 26679890 (+)
LOC111193118 NA non-coding downstream 397446 26683888 ~ 26685678 (+)
G76931 NA non-coding downstream 713752 27000194 ~ 27000955 (+)
G76939 NA non-coding downstream 761143 27047585 ~ 27047821 (+)
G76464 NA other upstream 940312 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 955409 25271256 ~ 25281371 (+)
G76423 NA other upstream 1052048 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 1232265 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 1253066 24974941 ~ 24983714 (+)

Expression


Co-expression Network