fads2 (fads2)


Basic Information

Item Value
gene id fads2
gene name fads2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24725144 ~ 24740083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235121.3
AGCGGAGGCAACGGGGGCAACACACAGAGGGAGCACGGAGGACACactcactatcacacacacacacacactcactgtcacacacacacaccctcatatacacacacccacactcatTAGAGCTCAGGAGGAggacacactcactcactcagcgatcagagaggtagagagagagcaggTGAATCAGAACTGCTGCAGAGAACCATCACTCTACTGGACAGAGCCCATTGAGTGTTGGAGGACTAATGGGTGGGGGCAGTCATCAGAACGAGGATGTCTCGACAGAAGGCAGAGGGGCGAATGCCGTATACACCTGGGATGAGGTGCAGAAACACAGTCATCGGGGAGACCAGTGGGTGGTGATCGAGCGGAAGGTGTACAATGTCAGCAACTGGGTTAACAGACATCCTGGAGGCCGCAGGGTTATCGGTCATTACGCTGGAGAGGATGCAACGGAAGCGTTTACAGCATTCCATCCTGATCAGAAGTTCGTACGGAAGTTTATGAAACCACTGCTGGTTGGAGAGCTAGCACCCTCTGAGCCCAGCCAGGACAACAAGAAAAATGCTGCCCTGGTTGCAGATTTCCAGGCATTGCGGGAGAAGTTTAATGCAGAGGGTTTGTTCCGCACTAGTCCTCTGTTCTTCATGATGCACCTCGGCCATATTCTAGTCCTGGAAGCCATATCTCTGGCGCTGCTTTGGCATTTTGGCAACGGCTGGATTACCACAATtctatgtattttattactggCTACTGCACAGTCTCAGGCTGGCTGGCTGCAACATGACTTCGGCCATCTGTCCGTCTTCAAGAGGTCCGGCTGGGATCATGTAGCGCACAAATTCGTCATTGGACATCTAAAGGGAGCCTCAGCAAACTGGTGGAACCATCGTCACTTTCAACACCATGCTAAGCCCAATGTGGTCCTTAAGGACCCTGACATCAACATGCTGAAGATCCTGGTACTGGGAAACGTGCTGCCTGTAGAGtaTGGAATTAAAAAGTTGAAGAACTTGCCCTACAACCATCAGCACAAGTACTTCTTTTTCATTGGTCCTCCTCTGCTCATCCCAGTGTACTTCAACATGCACATTTTGCAGACGATGATCATGCAGCGGGACTGGGTGGACTTTGCATGGTATCTGTCCTACTACGCACGCTACTTCTCTTGTTATGTTCCCTTTTTTGGATTCTTCGGATCAATTGCGATTCTGACCTGTGTGAGGTTTTTGGAGAGTCACTGGTTTGTGTGGGTGACCCAGATGAACCATATCCCTATGGATATAGACTACGACATACATGAGGACTGGCTAAGCATGCAGttgagaGCCACCTGCAACGTTGAGCAGTCATTCTTCAATGACTGGTTTAGTGGTCACCTGAACTTCCAGATCGAGCACCATCTGTTTCCCACAATGCCTCGTCATAACTACATCCGTGCTGCTCCTCGGGTGCAGGAGCTTTGCAAGAAGTATGGAGTTCAGTACCAAGTCAAGGGCTTATGGGAGGCCTGGTCTGACATCGTCAGGTCTCTGAAGAAGTCAGGAGAGCTGTGGCTGGACGCTTACCTTCACAAATAATCCCAATAATTCCAATCCCCAACTCGCCCCTCCTTCATTCAATGACTtcaatttttaaacaatatacaaCAATCAAAATCCAAAAACGTAAACGTTTAAGAATATCCGTAACAAATAAGTCTTAATTCACAAATACTGTTGCTGTTTATCTCTCCCTTTTCCATGTATGCTGGAACTCAACTGTAATTAAAGTGCTCTAGCTGTAACTGAATTGCACAGTAAACCTGCAGACAAATGCTGTTTAAATGCTGGACTTTACAACTGTAAGAACTGTACCTGATATTTCGTAGGGTTTTTTTAGTTCTGACTTCTACCTGTACCTGTTTAAATCAGAGAAAAGTTAGATAGTATTTTGAATTTATTAGGAGTTTTAGCAGAATCTGGATTACATAACTTTTGCAGTTTTGTACTTAATTTTTCCTGTATTGTTTATATGAAAATAcctgtgttttttgctttttttcctaATCAGCTATTACATATGATGTAATTTgtggaaaaaatgaagcagaaagcacacattaaacacatatgttgtgaaataaaattttaaaaagaggG

Function

symbol description
fads2 Predicted to enable oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water. Acts upstream of or within liver development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; fat cell; nervous system; optic vesicle; and pleuroperitoneal region. Orthologous to several human genes including FADS2 (fatty acid desaturase 2).

NR:

description
fatty acid desaturase 2-like

GO:

id name namespace
GO:0006636 unsaturated fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001889 liver development biological_process
GO:0006810 transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K10226 FADS2; acyl-CoA 6-desaturase (Delta-6 desaturase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235121.3 True 2144 mRNA 0.45 13 24725144 24740083

Neighbor

gene id symbol gene type direction distance location
LOC103028282 syt7,LOC108432693,LOC107754343,LOC107551433,LOC107655153 coding upstream 77595 24426129 ~ 24647549 (+)
LOC103029007 si:dkey-201c1.2,slc25a22,LOC107561181,LOC107732297,LOC107551436 coding upstream 323419 24361414 ~ 24401725 (+)
LOC103029535 pidd1 coding upstream 365969 24342743 ~ 24359175 (+)
drd4 drd4,drd4a,LOC107726856,LOC107551439,LOC107674856,LOC107561186,LOC107655149 coding upstream 499430 24211986 ~ 24225714 (+)
ap4e1 ap4e1,LOC107571341 coding upstream 593110 24120508 ~ 24132034 (+)
myrf myrf coding downstream 61919 24802002 ~ 24860926 (+)
LOC111193061 NA coding downstream 125707 24865790 ~ 24871366 (+)
LOC103024697 NA coding downstream 158953 24899036 ~ 24919450 (+)
LOC103025216 NA coding downstream 186930 24927013 ~ 24946686 (+)
hdac10 NA coding downstream 212742 24952825 ~ 24966947 (+)
LOC111193114 NA non-coding upstream 14193 24566804 ~ 24710951 (+)
G76226 NA non-coding upstream 139012 24561664 ~ 24586132 (+)
G76225 NA non-coding upstream 161984 24527631 ~ 24563160 (+)
G76217 NA non-coding upstream 262585 24441085 ~ 24462559 (+)
G76219 NA non-coding upstream 268453 24454211 ~ 24456691 (+)
G76349 NA non-coding downstream 181052 24921135 ~ 24922440 (+)
G76367 NA non-coding downstream 244069 24984152 ~ 24984391 (+)
G76463 NA non-coding downstream 553322 25293405 ~ 25293928 (+)
G76468 NA non-coding downstream 577112 25317195 ~ 25318657 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding downstream 583310 25323393 ~ 25327069 (+)
G76192 NA other upstream 464638 24258509 ~ 24260506 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other upstream 642300 24053061 ~ 24082844 (+)
LOC103038709 LOC103038709,LOC108432651 other upstream 687283 24032092 ~ 24037861 (+)
G75974 NA other upstream 807541 23915791 ~ 23917603 (+)
G75938 LOC105900730,LOC105912833 other upstream 1237274 23487530 ~ 23487870 (+)
LOC111193110 NA other downstream 133317 24873400 ~ 24898537 (+)
G76358 NA other downstream 206705 24946788 ~ 24948149 (+)
LOC103022391 parvb,LOC108432702 other downstream 234858 24974941 ~ 24983714 (+)
LOC103022708 NA other downstream 248313 24988396 ~ 25004515 (+)
G76423 NA other downstream 444002 25184085 ~ 25184732 (+)

Expression


Co-expression Network