LOC103039841 (mdkb,LOC103039841,LOC108432678,LOC107569721)


Basic Information

Item Value
gene id LOC103039841
gene name mdkb,LOC103039841,LOC108432678,LOC107569721
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23915791 ~ 23922222 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235162.3
GGGGAGCTGTCGCCTGTAAAGCAGGACAGACActgatatatacacacactcacacacacactcactcactcactcacacactgtgTATCTGTTGGTGAAGAGCCTCTCCCTCAGCGACAAGGATGCGGACTTTATTCTCAACAACAATTCTGCTGCTGGTTGCTCTGACAATCGCTGCGGAAGCCATAAAGAAAAAAGGGAATAAGAAGGAGGGCAAAGCGGACTCAGAATGCGCCGAGTGGGTGTTTGGGAAATGTGTGCCCAACAGTGGAGATTGTGGGCCGGGGGTTCGAGAGGCCACCTGCAATGAGCAGTCCAAGAAGCACAAGTGTAAAGTGCCGTGCAACTGGAAGAAGGACTTTGGGGCTGATTGCAAGTACAAGTTTGGCCGCTGGGCAGAGTGCGACACGTCCACAGGCACTCGGAGTAGATCTGGAACTCTGAAGAAAGCCATGTTCAACGCCGACTGTCAGACCACCATTAAGGTGTCCAAACCCTGCAATCCAAAGACACCCACCCCCAAGGGCGCAGAGAAAgcaaagaaaggaaagaaaggaaaagaaaactaAGTATTGCTGTTCCCCACCCCCCCCTCCTCCAAATTCCCAATGGAACGTCCCCACGAACCCCTCGTTAACACTCAGTATGGTGAGTGTAGTGCTGCTGAGTGGAAGTTAATCTACAATgaggaaaaaaatctataaccctatctatattttattctgtgtttttgttggtACAGTTGTGGTTGTTTCCattgttgtatttaaaaattTCTGTAGAATGTGGTTAACTGtactttatatttacttttcatATAATAGTAGGAAACCACACAATACCACTGTGTACTAAAGGTGTAGGACAAAAACAACACCGTATTTTCTTTGGCCCTATGAAAATGTCTCTGAAGAACAGCAGCAATAGAAACCAAGATTAAACTTCCACTGGAACAGCATCTGTGCATCTTAcatgaaatgaaatgtaaatttttttagTACTCTTTGCTATGGTAGCCCACCAAGTATCTATGCTTAAAACATGTCtatgtttgtagttttgtaatcaATGTACAATCAAAACTTCAGCATCACTAACTGATTACTTCTTCAGGTCTGTGAATAAAtaagaaaagtgtattttcaATAA

Function

symbol description
mdkb Predicted to enable growth factor activity. Acts upstream of or within brain development; neural crest formation; and positive regulation of neuron differentiation. Located in extracellular region. Is expressed in several structures, including nervous system; neural keel; neural rod; neural tube; and presumptive neural plate. Human ortholog(s) of this gene implicated in brain ischemia. Orthologous to human MDK (midkine).

NR:

description
midkine-B-like

GO:

id name namespace
GO:0014029 neural crest formation biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K06828 MDK; midkine

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235162.3 True 1149 mRNA 0.43 4 23915791 23922222

Neighbor

gene id symbol gene type direction distance location
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding downstream 143122 23747948 ~ 23772669 (-)
spg11 spg11 coding downstream 497646 23370623 ~ 23418145 (-)
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 769261 23025246 ~ 23146530 (-)
LOC103030744 LOC103030744,LOC108428386,LOC107549661,LOC107695010,LOC106560749,LOC107745110 coding downstream 897078 22969371 ~ 23018713 (-)
LOC103029587 LOC108428387,LOC108274707 coding downstream 965769 22832764 ~ 22950022 (-)
LOC103036104 LOC108432677,LOC108274966 coding upstream 3046 23925268 ~ 23974335 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 115035 24037257 ~ 24043153 (-)
LOC103033668 LOC108432685 coding upstream 228203 24150425 ~ 24156021 (-)
LOC103025218 NA coding upstream 234917 24157139 ~ 24180647 (-)
LOC111193112 NA coding upstream 262347 24184569 ~ 24188202 (-)
G76042 NA non-coding downstream 5286 23900642 ~ 23910505 (-)
G76040 ambra1,LOC108432675,LOC107740878,LOC107559958,LOC107569709,LOC107720791 non-coding downstream 19580 23895354 ~ 23896211 (-)
G76035 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273 non-coding downstream 29619 23881814 ~ 23886172 (-)
G76015 NA non-coding downstream 55363 23801545 ~ 23860428 (-)
G76023 NA non-coding downstream 71383 23843055 ~ 23844408 (-)
G76069 NA non-coding upstream 64527 23986749 ~ 23987527 (-)
LOC111193113 NA non-coding upstream 73188 23995410 ~ 23999176 (-)
LOC103037768 NA non-coding upstream 87748 24009970 ~ 24016230 (-)
G76086 prdm11 non-coding upstream 100907 24023129 ~ 24029595 (-)
G76080 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248 non-coding upstream 126354 24048576 ~ 24050518 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 82723 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 549575 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1341778 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2642774 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2844545 21065319 ~ 21071246 (-)
deaf1 deaf1,LOC107726848 other upstream 318676 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 868970 24791192 ~ 24798616 (-)
G76377 NA other upstream 992076 24914298 ~ 24920365 (-)
G76424 NA other upstream 1261987 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 1360567 25282789 ~ 25301768 (-)

Expression


Co-expression Network