kcnc1 (kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713)


Basic Information

Item Value
gene id kcnc1
gene name kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23747948 ~ 23772669 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235171.2
GGTCGGGAGGGTCGAACCCGCCATGGGCCAGGGTGACGACGAGGAGCGCGTCGTGCTGAACGTCGGCGGCGTGAGGCACGAGACGTACCGCGGCACGCTACGCACGCTGCCCGGTACGCGGCTCGCGCGCCTCGCCGAGCAGGCGGAGGGCGCGGGCCACGACTTCTTCTTCGACCGGCACCCGGGGGTCTTCGCGCACATTCTCAACTACTACCGCACCGGCAAGCTGCACTGCCCGGCGGATGTGTGCGGGCCGCTCTACGAGGAGGAGCTCTCCTTCTGGGGCATCGACGAGACGGACGTGGAGCCTTGCTGCTGGATGACGTACCGTCAGCACCGCGAGGCCGAGGAGGCGCTCGTGAGCTTCGGCGGCGCGGCGCCTCTGGACAACGGGCACAGGCACGagctggaggtggaggtggcCGCTGATGGCACGCACGAGGCAGCCGACGGCGACGAGGGTGCCGAAATGACGCGCAGGCTCGCGCACGGGGACGCGGCGGACGCCAGCGGTGGCCGCTGGAAACGCTGGCAGAAGAAGATGTGGGCGCTCTTCGAGGACCCCTACTCGTCTCGATACGCGCGGTGGGTGGCATTCGCATCTCTGTTTTTCATCTTGGTGTCCATCACAACTTTCTGTCTGGAGACCCATGAGGCCTTTAACCCCATCATCAACCGGACAGAGTATGATGTGGTAGACAATGAAATTGTGGAACGAAATGTCCCCCAGACTGAGACCATGGTGCAGCTTACGTACATTGAGGGGGTCTGTGTTGTGTGGTTTACCTTTGAGTTCTTAATACGAATCACGTTCTGTCCCGACAAACTCAAGTTTGTAAGAAACGCCCTCAACATTATTGACTTTGTAGCCATTCTACCTTTCTACCTGGAAGTGGGACTAAGTGGCCTGTCCTCCAAAGCTGCGAAAGATGTGCTAGGGTTCCTGCGTGTGGTGCGCTTTGTCCGTATCCTCCGTATCTTCAAGCTGACTCGTCACTTTGTGGGTCTTCGCGTCCTGGGGCACACGCTCCGAGCCAGCACCAACGAATTCATCCTGCTCATTATCTTCCTCGCCCTCGGAGTCCTCATCTTTGCCACCATGATTTATTATGCTGAAAGGATTGGAGCCAATCCCAATGACCCCCGTGCTAGTGAACATACCTATTTCAAGAACATTCCTATCGGCTTCTGGTGGGCTGTGGTTACAATGACGACACTTGGCTACGGAGATATGTATCCTAAGACAACATCAGGCATGTTGGTGGGCGCACTTTGTGCTCTGGCTGGTGTGCTGACCATCGCCATGCCAGTGCCTGTCATTGTCAACAATTTTGGCATGTATTATTCTCTGGCAATGGCAAAACAAAAACTaccaaagaaaaagaacaagcaTATCCCCCGGATTCCCCCACTGGGCTCACCAAACTACTGTAAGTCAGTCATTAACTCTCCAAGACCCAGTACACACAGCGATACCTGCCCTCTGGCCCAGGAAGAAGTCTCTGAGATTAGATACCAAGattttaaagtaaatggAGAGCCATCTAAAGCAGCCCTGGCCAATGAGGACTGCCCGCACATTGACCAGGCAGTGTCACCTGAGGAAGTTTTTAGCCCTGTAGACCGTGAGAGACCTTGCTTTCTGCTCACCTCCGGAGAACGGGGCAATCACATAGGGGGAAGAGTCAGGAAGGGTTATGAAAAGCCATGGAGCCATAGCAGCATGTCTGGAGGCGTGGCCTCAGTGTCGGCCCTCCCCTGCAGCCCGCCCTGTCTCATGCAGCAGGCCCACTCCCCCATCCCATCCATCCTGTAGCATGGACAACCAAACTAACCAATCAGAGGCCCCGCTCTGCAGCGCTGCACTGAGACGCCTGCCCACCCCGTGTACCATCATCCGTCTCTCTCATCAGCCTTTGTCTCAgctcttcattctctctctctgtctctctctctgtatctgtctctcaacGTTGTTCAGTCTTCTCGTTTATCCACTTACATCGTGTTATTGTCCATACTGTTCTTCTGTCTCCTTTTCTTCCCCTCTATCTTTTTCACCTTTCTTCTCATTGTCTTCTCTTTCCAGGACCATTATCGTgctttccctttctctttctcaccttCCTTTTCCTTCCCCCAACTTCCCTTTTCCTCCTTCAGTGTTTCTAAGCTGTGGTTTTTCATCGGGTGCTAATGGACACctttttaaatgagaaaaagatgAGAAAATGGCATTTCATGTAGTTTAGCAACACCGTTACaatggagtaaaaaaaaagttaaaaagttaaaaatgacaCCACCATGATCCTAGTGATGCACACATCACCAACATGAAACTATGACTGAAGAAACCTCATTTGCATTTGCATGCCTTGCATGGgaaactgagaaaaacaaatgtaagtCTAATGAAAATTCATGTAAGAAAAATATATCTTATGTTTTTACATCCAAAGCTTcttttcataaatatatatatatatatataatatataatgcagATCTAGTATAATACATGTAGCAGTAAAGACCCTTTCTTTGCTGACATTTTTTGCCTTTCCCCAAACCAGGAGCTTTTGTGTGCGTTTGAGCACACGCCATGTTTCTAACAGTAGCAGAGGTCAGATTGACCATTCAAGGTTTTTTTGTCCtttatgaaaatataataaaagatgCAAATAGTGAATCATGCACTTTAACTTTGATAATgaccatctacctacctaagATTTACTCCACTTAATTCAGACTATAAAACCAGCTGAGGGAGCGGCATCTCGCTGCAGACTCTAGTGTAGTTCAGCGTTTATTTTTTCATACCTTCAGTTTCATACTGTGCTAATTGGCATAATGTCTGTTGTTCTCTGTAGCAAACAAAATAGAACAATGTACATATACTTACTAACTATACAAGATTCTTTGCTgttgacacaaaaaaatttatatgtatgtataattttATCTTACTTGGGGAAAGGTAAATGCATGCACTTTtatgcaaaacaaacaaaaaaacccataaaaatataaaaacagtacCGAACCGTATGCGAAtgacactgtaaataaaatccTTGCATGAAATAAATTTTGTATTGAATC
>XM_007235172.2
GGTCGGGAGGGTCGAACCCGCCATGGGCCAGGGTGACGACGAGGAGCGCGTCGTGCTGAACGTCGGCGGCGTGAGGCACGAGACGTACCGCGGCACGCTACGCACGCTGCCCGGTACGCGGCTCGCGCGCCTCGCCGAGCAGGCGGAGGGCGCGGGCCACGACTTCTTCTTCGACCGGCACCCGGGGGTCTTCGCGCACATTCTCAACTACTACCGCACCGGCAAGCTGCACTGCCCGGCGGATGTGTGCGGGCCGCTCTACGAGGAGGAGCTCTCCTTCTGGGGCATCGACGAGACGGACGTGGAGCCTTGCTGCTGGATGACGTACCGTCAGCACCGCGAGGCCGAGGAGGCGCTCGTGAGCTTCGGCGGCGCGGCGCCTCTGGACAACGGGCACAGGCACGagctggaggtggaggtggcCGCTGATGGCACGCACGAGGCAGCCGACGGCGACGAGGGTGCCGAAATGACGCGCAGGCTCGCGCACGGGGACGCGGCGGACGCCAGCGGTGGCCGCTGGAAACGCTGGCAGAAGAAGATGTGGGCGCTCTTCGAGGACCCCTACTCGTCTCGATACGCGCGGTGGGTGGCATTCGCATCTCTGTTTTTCATCTTGGTGTCCATCACAACTTTCTGTCTGGAGACCCATGAGGCCTTTAACCCCATCATCAACCGGACAGAGTATGATGTGGTAGACAATGAAATTGTGGAACGAAATGTCCCCCAGACTGAGACCATGGTGCAGCTTACGTACATTGAGGGGGTCTGTGTTGTGTGGTTTACCTTTGAGTTCTTAATACGAATCACGTTCTGTCCCGACAAACTCAAGTTTGTAAGAAACGCCCTCAACATTATTGACTTTGTAGCCATTCTACCTTTCTACCTGGAAGTGGGACTAAGTGGCCTGTCCTCCAAAGCTGCGAAAGATGTGCTAGGGTTCCTGCGTGTGGTGCGCTTTGTCCGTATCCTCCGTATCTTCAAGCTGACTCGTCACTTTGTGGGTCTTCGCGTCCTGGGGCACACGCTCCGAGCCAGCACCAACGAATTCATCCTGCTCATTATCTTCCTCGCCCTCGGAGTCCTCATCTTTGCCACCATGATTTATTATGCTGAAAGGATTGGAGCCAATCCCAATGACCCCCGTGCTAGTGAACATACCTATTTCAAGAACATTCCTATCGGCTTCTGGTGGGCTGTGGTTACAATGACGACACTTGGCTACGGAGATATGTATCCTAAGACAACATCAGGCATGTTGGTGGGCGCACTTTGTGCTCTGGCTGGTGTGCTGACCATCGCCATGCCAGTGCCTGTCATTGTCAACAATTTTGGCATGTATTATTCTCTGGCAATGGCAAAACAAAAACTaccaaagaaaaagaacaagcaTATCCCCCGGATTCCCCCACTGGGCTCACCAAACTACTGTAAGTCAGTCATTAACTCTCCAAGACCCAGTACACACAGCGATACCTGCCCTCTGGCCCAGGAAGAAGTCTCTGAGATTAGATACCAAGattttaaagtaaatggAGAGCCATCTAAAGCAGCCCTGGCCAATGAGGACTGCCCGCACATTGACCAGGCAGTGTCACCTGAGGAAGTTTTTAGCCCTGTAGACCGTGAGAGACCTTGCTTTCTGCTCACCTCCGGAGAACGGGGCAATCACATAGGGGGAAGAGTCAGGAAGGAAGCCCAGCGAGTGAGCCGAAGCAGACAACCAAcagagtcagtgtgtgttatgAACCATGGTGTGCCAACCACTATGTGTGTCAACCATAAAGCCACATCTCCCACCTGATAGTGCtgtagggtgtgtgtatgtatgtgtgtgtgtgtgtaggtgcgtGAGTAAATGTTTTTCTCacatgtaagtgtgtgtgtgtgttagcgtgtgtaagtgtgtttaagtgtgtgtgtacagtagatcAGCATTATTTCTAAGTGACAGAGACAAACTCAGCGTAGATGTAGCACAGAGAAGCTGTTGTTGTTCAGCCATGTGTATCTCTGTTCCGTGAGTGGTAATTGTGCTGTTGTACTGTGTAAAGTGCCTATTGTTTTTGgggtgtgtgtacgtgtgtatgTGTCCGTGTTGTATACAGTGCTTTTGTGTGCTGGTGCATCAAATACGTGACTTcagtttttttactttcttctttctttccctccttaAGTGATCAGATGCTCTGTTTTTTGCTGTGCCTCCGTTTTAATGTTGTAAGATGTTGCTCCAGTTTGTATCACCGTGATTGACTAGTACACATTCTCTCCAGTCATGACCAAGTAGGGAGAAGCTCATTATGCAGAGAAACACCTTTTCCCTgtgatattttctattttctttaccTATAGTAGCAACTGCTTagtaaatgccttttgcacactTTGCACCTCTTCACTTTTACATTGCTTTCAGTAGAGCAAGGAATCACCAGCCCTCCTCCTGGAGATCTTCTGTCCCACAGGTTTCATCTCCAACGCAAAGATTCAtttaaaagtttgggcacacctgaTCGTTTTCactattttcctttataaatcattggttgtttggatcagctaatatatc

Function

symbol description
kcnc1b Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 7. Orthologous to human KCNC1 (potassium voltage-gated channel subfamily C member 1).
kcnc1 Predicted to enable delayed rectifier potassium channel activity. Involved in protein tetramerization. Part of voltage-gated potassium channel complex. Implicated in progressive myoclonus epilepsy 7.

NR:

description
PREDICTED: potassium voltage-gated channel subfamily C member 1 isoform X1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04887 KCNC1, KV3.1; potassium voltage-gated channel Shaw-related subfamily C member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235171.2 True 3108 mRNA 0.48 4 23749684 23772669
XM_007235172.2 False 2575 mRNA 0.51 4 23747948 23772669

Neighbor

gene id symbol gene type direction distance location
spg11 spg11 coding downstream 329803 23370623 ~ 23418145 (-)
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 601418 23025246 ~ 23146530 (-)
LOC103030744 LOC103030744,LOC108428386,LOC107549661,LOC107695010,LOC106560749,LOC107745110 coding downstream 729235 22969371 ~ 23018713 (-)
LOC103029587 LOC108428387,LOC108274707 coding downstream 797926 22832764 ~ 22950022 (-)
LOC103030430 NA coding downstream 917155 22824573 ~ 22830793 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding upstream 143122 23915791 ~ 23922222 (-)
LOC103036104 LOC108432677,LOC108274966 coding upstream 152599 23925268 ~ 23974335 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 264588 24037257 ~ 24043153 (-)
LOC103033668 LOC108432685 coding upstream 377756 24150425 ~ 24156021 (-)
LOC103025218 NA coding upstream 384470 24157139 ~ 24180647 (-)
G75989 NA non-coding downstream 60558 23679205 ~ 23687390 (-)
G75939 NA non-coding downstream 260090 23487531 ~ 23487858 (-)
G75937 NA non-coding downstream 260988 23486621 ~ 23486960 (-)
G75928 fam96a,LOC107673635 non-coding downstream 322603 23418711 ~ 23425345 (-)
G75883 NA non-coding downstream 472542 23275044 ~ 23275406 (-)
G76015 NA non-coding upstream 28876 23801545 ~ 23860428 (-)
G76020 NA non-coding upstream 64942 23837611 ~ 23839200 (-)
G76023 NA non-coding upstream 70386 23843055 ~ 23844408 (-)
G76035 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273 non-coding upstream 109145 23881814 ~ 23886172 (-)
G76040 ambra1,LOC108432675,LOC107740878,LOC107559958,LOC107569709,LOC107720791 non-coding upstream 122685 23895354 ~ 23896211 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 381732 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1173935 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2474931 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2676702 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 2999740 20622641 ~ 20748208 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 54545 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 468229 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 1018523 24791192 ~ 24798616 (-)
G76377 NA other upstream 1141629 24914298 ~ 24920365 (-)
G76424 NA other upstream 1411540 25184209 ~ 25184469 (-)

Expression


Co-expression Network