LOC103043661


Basic Information

Item Value
gene id LOC103043661
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23732062 ~ 23736230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235175.3
AGAACAACTGACTAAACtgtcaatgcatttttttttctttgcatttttcttGCTTTAATGATCACATAGACTCTGGCCTGACTTGCTTCCCCAAATTTGCATATAACATATGACTAACCCTAGACACGCATTTGCAGTTCATCATTTGCGCAGCCAGCATGCAAACCGGAACACAGACTTTCAAAACGTTTGTGATTATCAGACAGCCACCTCTAACTTCTCGACCAGCGCTGTAGGTAAACTGCTTGCAAAGCTGTTGAAGTGCCTGGAAGACTGAAGATCGAAGCTGCTAGCAAACAGCCTTGAAGACTGCATTTGGAAATTGGTAACTGAGTATGAAAGAAGGGCTCCTGTTGCAGAAGATATGAAGTCCCTGCTGTATCTGATAGCCCTTGTGCTTTTCAGCACAAGCACACATGGATGGGATTTGCAAAATTGTCAACTCAACAAACTTGCTGCAGTGATCTCAGATTGTTTTGGTGAACATGGTGCTTACTGTGAGAACATCATAGATTTTGAAGTGGATCTTGCTGTGCTCCCATCTGACATTGAAAACTTGTGCATTAACATGGAAGTGGAAAAAGCGTATGGATCCCTTGATTCTGGAACTTTTTCACGCTTTACTTCTCTGGAGTACCTGCAGATCGCTGGCTGTTTTAATGAAATCAATCCTGGGGCATTTCAAGGACTTTCAAACCTCAGAAGATTAAGCCTTTATTTTCATTGCTCTTGTGCAAACGTATTGTCACGAAAAGTATTTAAGGACCTACCTCAGTTGAAGGAATTAGAAATTAGCGGGTTAAATCTTTCAGTGGTGGAAACTGATGTTTTTTATGATCTCTCCCAAATTGagaacttttcttttattgagcCTTGCACTTCTTCTGTCTTTTCAGATCTAATATGCAGAATAATACGATtcacatctttaaaaaaaattattttcacTACGTCGAATGACGAGTTTTTAGATCACCCTAACTGCACCTATGGAAAAGAATTTGCGTTTAGAAATGCAATTCTACCACGTAGCGCGAGAGCCCAACTgacattttacaaaattaaacattttcaacCTGGAGCGATAGATTTTTTCCAAGATTTGTCTAAATTAACGTTTGCTTACAATGACACACTACTTAATTATCTTCCCAGATCTGACATCAAGAGTGTAGATAATTTGGATTACAGTAGTGATGAACTTGTTGTGGAGAATATATGCAATGCTGTGTCCAAGTTGTCAACTAAACAGCTTTCATTAGGTATTAGCAATACTATTAATTTCTCTCATTTTAAGGATGAAGACTGCATTGCTCTTGAATACCTACAGATCTCTGTCTATGACTTACAGCCCATAAACTTGAGTTTTATCTACTTTATGACAAATCTTAGTGCTTTATTGGTTTTTGGCCAGGGATTGGATGCACCTCATTTTAGTTCTATATGTTCATCTCCAGGAAATGTCTCATGGCTCTCTATTTTGTCTGTTGAAAAAGGTTCGATCAGTAACATATATAGCCATCAATTCAGTTGTTTAGTGAATCTCgaaacattaaatattacttGTTCTTCAGTCTCAACCATTGAACCTTTTGCTTTCATGGAATTAGGCTCATTAAGGATCTTGAGCTTCTGGAATAACGACATCAGTGtgattagttaccatgtttttgATGGCCTGCACAACCTTTTAGTGCTAGACCTCCAGAAAAATCCCCTACATTCTATTGAAGAAATGGCATTTAGGCATTTTGTGAATCTTCAAGAattatattttagtaattttaaaaCCTTACTACCCGAGTTTGTAATTAGGTGGAATTTAACACACATATTTGGTAATATTTCAGAACACCTGACCAACCTGTCCTTTGTGTATGTTGAACCAATGGAGCTGATTATTGGCTCAAATGTGGTTTTGAAACATAATCTTACTTTCTATGTGTCTACAATTGTTGTGACTATTGAGGACTGTGAGCGTCCGTTTTTCGCCTCGGTCACCAGTCTCCATGCAAGAGGCAAACAAGTCCTCTGTGGCTCAGAATTCATAGCAAAGTATGTTAAAAATGTGGAGAACTTCTTTTTTCGCTCTGATCATTCAGACACTGCTGGGGATTTGACTCATATTAATAAACTTGTTCACCTCAAGGTGTTGGAGTTTGATGCTGTGGACTTTTCGAAACAATCAAACGTACCTGCTATTTTCCACAACCTGACTAAACTAAAGGATCTGACGTTGATTGACTGTAGACATTTCAGTATTGATGGAACTTTGACCAAAGACCTAAGATCACTGGAACTTCTGATTTTGGCATTCCGAGATTATGTGACCATGTATGCCAGTTTTTTTGAACCTCTTATCAGCCTACAGAATCTGGTCTTTTttcatcttcatcttttttgCAATTGTGATAATGCCAATTTTATCAAGTGGGTGAAAGAGAACAGGCAAGTGCAAGTGGAAATTAAGCTTCCAGGTCTGAATGACTTGCAGTGTTTATCCAGTGATGGCTTTGAGAGGCCCAACATGCAGGTTTTTGCAAAACAGAACTGTGTTTTTGAGATTGAATTTGTGCTCTTTATTTCCACTTCTTTGGCTGTGGTCCTCCTCCTGTTGGCAGTATTTGTCCATCAGATGAGTAGACATTTAATTCTCCCGCTTTATCACATTGCTCGTGCCTGGATTGAGCAAGCTGTAAGGGAAGATGGCAGGGTGCGGTACCGCTACGATGCGTTTGTTTCTTACAGCGGCAAAGATGAGAGCTGGGTGCTGAAGGAGCTTTTGCCAAGCCTGGAGCAGCGAGGACCACCCTTCCTTCGGCTTTGCCTACACACCAGGGACTTCCAGCTGGGCAAGGACGTTGTGGATAATATCACAGACAGCTTGTATGAAAGTCGCTATACACTTTGTCTGGTCAGCCGCCACTACCTGCGCAGCAACTGGTGCTCTTTGGAGATGCAGCTAGCAACCAGCCGATTGCAGGTGGAACACAAAGATGTCCTTATTCTGGTTTTCCTGGAGAAGATCCCTTCCCGCCTGTTGTCTGCGCATCACAGACTGGCTCGTCTGGTCAAGACCAGAACGTACCTTGACTGGCCTCAGGATCCAGAGGAACGTGATTCATTCTGGGATAGACTTTGGGACAAACTAAAACCTGAAGAAGCGTTGTGAAGAAATGAATGACTATGTTTTTCTTTGACTGAGACATTCACCTTATAaacaaaagtttatttattgtttctttcaaAATCAAGCGTAATGACAATAATTTGGTGTAAATCTGCTTTCCATTAGCAGCTAGACTCTTGCTAGTCTTGCTTTTCAGGTTAGGTAGAtaatgcgctctctctccccatcactccTGAAATGATGTCAGTCagtacaggcatctgttagctgttgtatcagagctgggttaCAGTGCTTTCCTCCGTGCAAGCTGGTTACCTGGctatgctgcatcagcagcagtttaaaaagaggtggtggctggctttttattttgcttttattctgCTCATCACCTCACCATTTAGGACTGAGACtggctgtgtgtatgtgaaagtagctaaatgctttaattttcactaatgtgtataaagtgtataaagTATAGGCACAAGCTCATGATCAAAAGTATAATTTACTTCACATTCTAAGGCTTTTATGTTATCCAGCTATTTGTTCTTAAGATACtgccaatattttaaatatcattCATGTAAACAGGGTTTGCTGAAAAATTGATTCACTCGCTCACTGCCAGTGACATTTGTTTGTATTGCATTTATATCTGAAGGTCACATTCAATCCAAACAGTATTAATGTTAAAACCCATAGCTGTGTTAGATCCTCTTGGTAAAATGTTGCAGTGAAGATGCATTTACTTCCTTAAgatgcttcttctttttttgtgtgaagtTTCTGTTCTCGTTTTTTTCGTTTTCACTTCAGTGTCAGCCTTTCTATTTTTGAAATgaaaactgaagtgcttttaCTAAACACATGCATGTCTAACATATAGAGGAAGAGCAGCAGTTCGATGTAAGATGTTTTTGTTAGATATCAGTgacttaataaagtgtttgtatAGCCGCTGTTAAACTTTACCTTTCCTCTAATTCTTATTAAATATTTGCCTGCTTgaacataatacatttttaatgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235175.3 True 4169 mRNA 0.39 1 23732062 23736230

Neighbor

gene id symbol gene type direction distance location
tph1 tph1,tph1a,LOC107673292,LOC107564603,LOC107670227 coding upstream 21187 23703925 ~ 23710875 (+)
saal1 NA coding upstream 44666 23679217 ~ 23687396 (+)
fam96a fam96a,LOC107673635 coding upstream 306757 23418666 ~ 23425305 (+)
rsl24d1 rsl24d1,LOC107694994 coding upstream 907646 22821117 ~ 22824416 (+)
LOC103027184 LOC108428395,LOC108275251,LOC103155695,LOC105938547,LOC106919346,LOC107706850,LOC103466445,LOC107552424 coding upstream 1065253 22637160 ~ 22666809 (+)
dhtkd1 dhtkd1,LOC107559980,LOC107673284 coding downstream 50035 23786265 ~ 23802931 (+)
LOC103041809 camk1d,camk1db,LOC103041809,LOC108275359,LOC107569715,LOC107670218,LOC107740872 coding downstream 68332 23804562 ~ 23827333 (+)
LOC103041200 hal,LOC103041200,LOC108275357,LOC107740873,LOC107670217,LOC107720790,LOC107673290 coding downstream 100088 23836318 ~ 23856218 (+)
nox5 nox5,LOC107720789,LOC107559983,LOC107673291 coding downstream 122239 23858469 ~ 23873790 (+)
LOC103040160 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273,LOC106562601 coding downstream 143955 23880185 ~ 23886241 (+)
G75889 NA non-coding upstream 438920 23292836 ~ 23293142 (+)
G75882 NA non-coding upstream 457049 23274570 ~ 23275013 (+)
G75881 NA non-coding upstream 465743 23265930 ~ 23266319 (+)
G75874 NA non-coding upstream 517313 23214403 ~ 23214749 (+)
G75807 NA non-coding upstream 650391 23025275 ~ 23081671 (+)
G75957 NA non-coding downstream 45802 23782032 ~ 23782993 (+)
G75988 NA non-coding downstream 240835 23977065 ~ 23977422 (+)
G76060 LOC103039440,LOC108432681,LOC105892437,LOC107673304,LOC107740884,LOC107569705,LOC102199411,LOC100711429 non-coding downstream 304144 24040374 ~ 24041616 (+)
G76197 NA non-coding downstream 543264 24279494 ~ 24280790 (+)
G76202 NA non-coding downstream 553162 24289392 ~ 24291726 (+)
G75938 LOC105900730,LOC105912833 other upstream 244192 23487530 ~ 23487870 (+)
LOC103047784 LOC108428360,LOC108274708 other upstream 916540 22781735 ~ 22815522 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other upstream 951103 22754973 ~ 22780959 (+)
mov10l1 NA other upstream 2467286 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 2635156 21088622 ~ 21096906 (+)
G75974 NA other downstream 179561 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 295862 24032092 ~ 24037861 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other downstream 316831 24053061 ~ 24082844 (+)
G76192 NA other downstream 522279 24258509 ~ 24260506 (+)
LOC111193110 NA other downstream 1137170 24873400 ~ 24898537 (+)

Expression


Co-expression Network