saal1


Basic Information

Item Value
gene id saal1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23679217 ~ 23687396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235179.3
GGTGGTGTGCGGTGAGCTGTGTAAACACTGAGCTGtagagcagaagaagaagaagaagaaggcgtTAGAAACAGAATCGGAGCCGGTTTAAACCCACAAATCCCGCTGGTTCTGTAGTTTGGTTGTAGTTCTTCAGTCTTCATGGATCATAAAGATAACTGCACTGAGGAAGGAGACGATGATCAGTCCAGTTCGTCATCATGCCCAGACTCACCGGAGATGGACCGTAACCCATCACCACCTCCTGAGGGAGATGAAGAAATAGTGGAAGAGGCTGATGCCATTGGAGAAACAGTGTACAGCAAACACTGGCTCTTTAGCACTTTAACCCAACTTATTCAGATGGTGACAGATCAGGAGTCCAAAGAGGGAGAGCAGGAACTGTCTGAGGAGCATGAGGATGAGCTGTGTAAAGTGTGGGACATGGCCATGAATAAGgaTGTGGCTGGTTTTCTTCAAGAGTTTAAGGCTCCAGACATCTTACTGGGTGTGATTGCAAAGTCTCGTAATCCACGCCTGACTGAAATCTgtgtgggaattctgggaaatATGGCTTGTTTCCATGATACCTGTGTCTCTTTGAGCCAGAATGTTGACCTAGGTGATGTGCTTCTGTTACTGCTGGGTGACAGTGATCCTCCCACACTGTTGGAGACCTGCAGGCTTCTGGTGACTTGTTTGTCTCAACCCGATGTTGCCCCCTTGTGGCTGCAGAGAATACAGCAGCAGGCTGCCACATGCAACAACCTCTGTTTTATAATGTGCAGTTCTACTAATGTGGAATTGTTGATGAAGGTGGGGGAACTGGTTGATAAGCTATTTGACGAGGACGAGGACCTGATGAAAAGCTGGCTGTCTGGACTGCCGGGGGAGAGTGACCCGGACAAGGACACACACCAGGACATCTCGTCTTCTCTGCTGGAGGCCGCAGTGCAGCTTAGgaaGGAGAGTCCAGAAGCCCTTGAGGTGTATCTGCATGCTCTTCAACTCCTAACTACAGTAGATGAAGGAGTGCAGAATCTTGTGTCAGAAGGAGGGTGTGGAGAGGCACTGTGGACATTTGTGTGTGAAGTTGTGTGTGAAGACTTGTGCCAGCCAGGGGACCCCTCTATTGTCCTGCAGGAGCAGAAGGCTCTCCTGGCTCCTGCACTTGCTCTGCTTTCTACTTTATACAGTAGCCTTCAGAGAGACATCAGTCTGTCACTGGTGGGCAGTCTTTTCCGAATCTTGTACTTCCATACTGAAAATCAGCAAGCTGGGCATAAACGAAAGCAGGAGTCAggggatggacagacagatgaaGTGCGAGATCAGGAAGACACAGATGTACAGCTCCAGGCCCTGGTCGAGATAGCAGCGGAGCTACTTTGCACTGTTCTCCCCGATTTACCCAAGGACACTGTGTCACAGCTGGTGAGACAAGATGACTTCAGTGAGAAGATCTGTGTGTCTGCTTTAAAGACACTCCTGCCCCAGAACATCACATCTGTGCAGTTCTTGGTTTCCATGTTATCTGAGGTAGAGCCCAACCTGGCAGACATTCTCAGGAGGGAGTGTTCCATTCCATCAGAACCAGAATAGACCACGGACACCAGATATAGAATGAACTTGAATCCCTCTAATATAAGGCTCCTCCTGAAATGAAACAACTGTTTATCACACACAGGTACATGTTAGTGTGCGTATCTAAGTTATGTATCAATGAACTTTCACTACAGAGTAGAGATCTgggctctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagactgtgtaGAGGTCTGCATCCACCTCCCACACCCCACCCCCAAACAGACACCGGAGGTATTATGTTAATActgatgtatattttttatgtggatATGTGTATGTTCATGATTGTTTTgataaaggctttttaataaaCTCAGACTTTGATACA

Function

NR:

description
protein SAAL1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235179.3 True 1939 mRNA 0.48 13 23679217 23687396

Neighbor

gene id symbol gene type direction distance location
fam96a fam96a,LOC107673635 coding upstream 253912 23418666 ~ 23425305 (+)
rsl24d1 rsl24d1,LOC107694994 coding upstream 854801 22821117 ~ 22824416 (+)
LOC103027184 LOC108428395,LOC108275251,LOC103155695,LOC105938547,LOC106919346,LOC107706850,LOC103466445,LOC107552424 coding upstream 1012408 22637160 ~ 22666809 (+)
LOC103021604 LOC103021604,LOC108428402 coding upstream 1707981 21956572 ~ 21971236 (+)
LOC103022337 yaf2,LOC108428404,LOC103358851 coding upstream 1724078 21948555 ~ 21955139 (+)
tph1 tph1,tph1a,LOC107673292,LOC107564603,LOC107670227 coding downstream 16529 23703925 ~ 23710875 (+)
sergef NA coding downstream 25134 23712530 ~ 23742791 (+)
LOC103043661 NA coding downstream 44666 23732062 ~ 23736230 (+)
dhtkd1 dhtkd1,LOC107559980,LOC107673284 coding downstream 98869 23786265 ~ 23802931 (+)
LOC103041809 camk1d,camk1db,LOC103041809,LOC108275359,LOC107569715,LOC107670218,LOC107740872 coding downstream 117166 23804562 ~ 23827333 (+)
G75889 NA non-coding upstream 386075 23292836 ~ 23293142 (+)
G75882 NA non-coding upstream 404204 23274570 ~ 23275013 (+)
G75881 NA non-coding upstream 412898 23265930 ~ 23266319 (+)
G75874 NA non-coding upstream 464468 23214403 ~ 23214749 (+)
G75807 NA non-coding upstream 597546 23025275 ~ 23081671 (+)
G75957 NA non-coding downstream 94636 23782032 ~ 23782993 (+)
G75988 NA non-coding downstream 289669 23977065 ~ 23977422 (+)
G76060 LOC103039440,LOC108432681,LOC105892437,LOC107673304,LOC107740884,LOC107569705,LOC102199411,LOC100711429 non-coding downstream 352978 24040374 ~ 24041616 (+)
G76197 NA non-coding downstream 592098 24279494 ~ 24280790 (+)
G76202 NA non-coding downstream 601996 24289392 ~ 24291726 (+)
G75938 LOC105900730,LOC105912833 other upstream 191347 23487530 ~ 23487870 (+)
LOC103047784 LOC108428360,LOC108274708 other upstream 863695 22781735 ~ 22815522 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other upstream 898258 22754973 ~ 22780959 (+)
mov10l1 NA other upstream 2414441 21250467 ~ 21264776 (+)
G75391 pus7 other upstream 2582311 21088622 ~ 21096906 (+)
G75974 NA other downstream 228395 23915791 ~ 23917603 (+)
LOC103038709 LOC103038709,LOC108432651 other downstream 344696 24032092 ~ 24037861 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other downstream 365665 24053061 ~ 24082844 (+)
G76192 NA other downstream 571113 24258509 ~ 24260506 (+)
LOC111193110 NA other downstream 1186004 24873400 ~ 24898537 (+)

Expression


Co-expression Network