gtf2h1 (gtf2h1,LOC107572319)


Basic Information

Item Value
gene id gtf2h1
gene name gtf2h1,LOC107572319
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25236419 ~ 25246778 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235181.3
GAAGAAGTATCCGGCGGCACTGGTTGCGGTTTCAGCGCCGCGCTTGTTTCACGGATATGGAGAAGTTGGAGGCTGCGGGGGCTGACATGTTAGGAGCCAGTGTTTTCTGTGAATAACACATAAAATACTGGAATTTAAACTCTGTTTACTCCTTTAACTACAGTATAAACACTGAGGTAACCGCTTCAGTAACGCCGGAGCCCCAGtcatGGCAGCCCTGTCAGAAGAGGTGCTCTTGGTGGTGAAAAGGGTCCGACAGAGGAAACAAGATGGAACACTTTATCTTATGACTGAGCGCATAGCCTGGGGCCCAGAGGGAAAGGATCGCTTCACGGTCAGTCACCTGTACGCCGACATCCGCTGTCAGAAGATCAGTCCTGATGGCAAGTCAAAGATCCAGCTTCAGCTGGTTCTGCACACAGGAGAGAGTACCACTTTCCACTTTGCAAATGAAAGCACAGCCCTTAAGGACAGAGATGCTGCCAAAGACCTTTTGCAGCAGCTTCTGCCCAAGTTTAAAAAGAAAGCCAACAAACAACTAGAGGAGAAAAACAAGATGCTACAGGAGGATCCTGTGCTGTTTCAGCTGTATAAGGATTTGGTAGTGAGTCAGGTTATCAGTGCGGAGGAATTCTGGGCCAGTAGACTAAAGTTGAGTTCTGTAGAACACTCTTTGTCCAACAACAGCAAGCAGGAAGTGGGAATATCAGCAGCGTTCCTGGCAGACATTAGGCCACAGACAGATGGTTGTAATGGTTTAAAATACAACCTGACCTCTGACATCATCGAATCGATCTTCAAAACCTACCCTGCAGtcaaaCAGAAATACGCTGAAAATGTACCACACAACCTGACGGAGAAAGAGTTCTGGACACGATTCTTTCAATCACACTACTTCCACAGGGATCGCATCAACACTGGACAGCAGGATATCTTTTCAGAGTGTGCCAAGCAGGATGAAAAAGgtTTGAAGTCCATGGTTGTGCAAGGTGTTAAGAACCCTATGGTGGATCTGCTGTCACTGGAGGATAAAACGTTAGATGAGGGATATGGATCTTTAACAGTTGGCCCCAACTCAAGCAAAACAGTAAAGGAAAACAGCAACTCTGCCATCATTAAACGTTTCAACCATCACAGTGCCATGGTGCTGGCAGCCGGCCTACGCAAAGTAGATGCACCAAGTGACCAGGCCAGTGAGACCAGTAGCACTGATGGGAATTCGAGAGACTCCGACTTCTTCCAGCCACCAATTAAAAAGGTGAAATTGCAAGAGGCCATTGAGTATGAGGACTTGCAGAATGGGTCTGGGCCTAAAACTATTGCTTTGAATCTGAAGAAATCTGACAGgTATTCCCATGGGCCAGTTCCTTTGCAGTCCCATCATTACTCCACCAGTCAAGATATCATCAACTCAGTCAACTGCATTCAAGAAGAGATAAGCTGCTACAAACCCTGCCTTACTCGGGTGATGCCCAGCAGTGCAGCCAGTTCAGCTATCACAGCCCTCTCTCCTGGAGGATTACTAATGCAAGCTGGAACCCAACAGGCTGTCAGCCAATTGGTTCCCACTGATGTTCAGAGTGAACTGAAGCACTTGTATACAGCAGCAGGAGAGCTGCTACGGCACTTTTGgtcctgttttcctgtcaatACACCCTTCCTTGAGGAAAAGGTGGTTAAGATGCGGTCCAATCTAGAGAGATTCCAGTCAACTAAGCTCCGCCCCTTTCAAGAGAAGATCCAGAGGGAGTACTTAAGCACCAACCTGACGAGCCACTTGGACGAAATGATCCAGGCTGCTTATAACAAGTTCCATGCCTGGCAGACACGCCGTATGGCGAGGAAAACCTGATGAAAGAGAGACTGGACAAATTCACTTAAATGAGGAGTAATGACTATTGGGGAAAATGGAAAGAGGGCGAGGGAACTGGCTCTCCCTGTTAAGGTCGCTCTACCCAGAGTAAAAgtgtagagagagacaggccATCTGTGTTTAGATGGACAGGACTCATCTCTCCCTTCAGAATAGTCCATGTGGAGATGGACTACGCCAGTCACGAAACATGtagtttttccttttctcttattttgtttgtaatgttcaactttgtttttgctttttatttctcCTTTACTTTCAGTGGATGAGAAAACATGTCTGGCTTCTTTGTTCAGGATAGAAACAGACTTGTACTTTGACAGTGTTGAATTTTATGACCAAACTGTGGGCTTAATGATACCAGAGGAAATATTCTCAGGAACTAAAAATGTTCAATGCAAAGGATTCTGGAAGGtgagtttttttaatgatgcaCAGCAAAGGACTCAATGATAAGGAGGACTTCTTAAACCTTATGCCGTCAGTGCAAAGCAGTATGGTTCGGTGGAGACTTGGGTCTCACTGGATACCCAGAGGCCCTCGATAAGGAGGGTGTGTGAATAAagcaatactgtataaatactgtTTCTGTTGTGTATTACTGAATTGTATCCCATGCAGATACCTGACTGCACTGCTCTGTGTCTATTTTTACTGCACTGAAGACACAACTCTGTATGTTACTTCAAAATAAACTTATCAAGATTGCTACTGTACCCA
>XM_015601852.2
AGAAGTATCCGGCGGCACTGGTTGCGGTTTCAGCGCCGCGCTTGTTTCACGGATATGGAGAAGTTGGAGGCTGCGGGGGCTGACATGTTAGGAGCCAGTGTTTTCTGTGAATAACACATAAAATACTGGAATTTAAACTCTGTTTACTCCTTTAACTACAGTATAAACACTGAGtcatGGCAGCCCTGTCAGAAGAGGTGCTCTTGGTGGTGAAAAGGGTCCGACAGAGGAAACAAGATGGAACACTTTATCTTATGACTGAGCGCATAGCCTGGGGCCCAGAGGGAAAGGATCGCTTCACGGTCAGTCACCTGTACGCCGACATCCGCTGTCAGAAGATCAGTCCTGATGGCAAGTCAAAGATCCAGCTTCAGCTGGTTCTGCACACAGGAGAGAGTACCACTTTCCACTTTGCAAATGAAAGCACAGCCCTTAAGGACAGAGATGCTGCCAAAGACCTTTTGCAGCAGCTTCTGCCCAAGTTTAAAAAGAAAGCCAACAAACAACTAGAGGAGAAAAACAAGATGCTACAGGAGGATCCTGTGCTGTTTCAGCTGTATAAGGATTTGGTAGTGAGTCAGGTTATCAGTGCGGAGGAATTCTGGGCCAGTAGACTAAAGTTGAGTTCTGTAGAACACTCTTTGTCCAACAACAGCAAGCAGGAAGTGGGAATATCAGCAGCGTTCCTGGCAGACATTAGGCCACAGACAGATGGTTGTAATGGTTTAAAATACAACCTGACCTCTGACATCATCGAATCGATCTTCAAAACCTACCCTGCAGtcaaaCAGAAATACGCTGAAAATGTACCACACAACCTGACGGAGAAAGAGTTCTGGACACGATTCTTTCAATCACACTACTTCCACAGGGATCGCATCAACACTGGACAGCAGGATATCTTTTCAGAGTGTGCCAAGCAGGATGAAAAAGgtTTGAAGTCCATGGTTGTGCAAGGTGTTAAGAACCCTATGGTGGATCTGCTGTCACTGGAGGATAAAACGTTAGATGAGGGATATGGATCTTTAACAGTTGGCCCCAACTCAAGCAAAACAGTAAAGGAAAACAGCAACTCTGCCATCATTAAACGTTTCAACCATCACAGTGCCATGGTGCTGGCAGCCGGCCTACGCAAAGTAGATGCACCAAGTGACCAGGCCAGTGAGACCAGTAGCACTGATGGGAATTCGAGAGACTCCGACTTCTTCCAGCCACCAATTAAAAAGGTGAAATTGCAAGAGGCCATTGAGTATGAGGACTTGCAGAATGGGTCTGGGCCTAAAACTATTGCTTTGAATCTGAAGAAATCTGACAGgTATTCCCATGGGCCAGTTCCTTTGCAGTCCCATCATTACTCCACCAGTCAAGATATCATCAACTCAGTCAACTGCATTCAAGAAGAGATAAGCTGCTACAAACCCTGCCTTACTCGGGTGATGCCCAGCAGTGCAGCCAGTTCAGCTATCACAGCCCTCTCTCCTGGAGGATTACTAATGCAAGCTGGAACCCAACAGGCTGTCAGCCAATTGGTTCCCACTGATGTTCAGAGTGAACTGAAGCACTTGTATACAGCAGCAGGAGAGCTGCTACGGCACTTTTGgtcctgttttcctgtcaatACACCCTTCCTTGAGGAAAAGGTGGTTAAGATGCGGTCCAATCTAGAGAGATTCCAGTCAACTAAGCTCCGCCCCTTTCAAGAGAAGATCCAGAGGGAGTACTTAAGCACCAACCTGACGAGCCACTTGGACGAAATGATCCAGGCTGCTTATAACAAGTTCCATGCCTGGCAGACACGCCGTATGGCGAGGAAAACCTGATGAAAGAGAGACTGGACAAATTCACTTAAATGAGGAGTAATGACTATTGGGGAAAATGGAAAGAGGGCGAGGGAACTGGCTCTCCCTGTTAAGGTCGCTCTACCCAGAGTAAAAgtgtagagagagacaggccATCTGTGTTTAGATGGACAGGACTCATCTCTCCCTTCAGAATAGTCCATGTGGAGATGGACTACGCCAGTCACGAAACATGtagtttttccttttctcttattttgtttgtaatgttcaactttgtttttgctttttatttctcCTTTACTTTCAGTGGATGAGAAAACATGTCTGGCTTCTTTGTTCAGGATAGAAACAGACTTGTACTTTGACAGTGTTGAATTTTATGACCAAACTGTGGGCTTAATGATACCAGAGGAAATATTCTCAGGAACTAAAAATGTTCAATGCAAAGGATTCTGGAAGGtgagtttttttaatgatgcaCAGCAAAGGACTCAATGATAAGGAGGACTTCTTAAACCTTATGCCGTCAGTGCAAAGCAGTATGGTTCGGTGGAGACTTGGGTCTCACTGGATACCCAGAGGCCCTCGATAAGGAGGGTGTGTGAATAAagcaatactgtataaatactgtTTCTGTTGTGTATTACTGAATTGTATCCCATGCAGATACCTGACTGCACTGCTCTGTGTCTATTTTTACTGCACTGAAGACACAACTCTGTATGTTACTTCAAAATAAACTTATCAAGATTGCTACTGTACCCA
>XM_022672417.1
TCCTGTCCCAGTTCACACTGCTGGAGTTAACTGTAGCATGAGCTAGCGGGCTAACCGAGCTGTCTCCAGACGTTAGGGTAGATAAACGGAGGCATAAACACAGCCTCTCACTCAGTGTAAAACTCATTTAATTATGTTAGATGTTTAACGTAGACAGACGACTGAAATCCCCGAGTGCCTTGATTCTGTGTTTACACTATCCAGCCTGTCTTCTAGtcatGGCAGCCCTGTCAGAAGAGGTGCTCTTGGTGGTGAAAAGGGTCCGACAGAGGAAACAAGATGGAACACTTTATCTTATGACTGAGCGCATAGCCTGGGGCCCAGAGGGAAAGGATCGCTTCACGGTCAGTCACCTGTACGCCGACATCCGCTGTCAGAAGATCAGTCCTGATGGCAAGTCAAAGATCCAGCTTCAGCTGGTTCTGCACACAGGAGAGAGTACCACTTTCCACTTTGCAAATGAAAGCACAGCCCTTAAGGACAGAGATGCTGCCAAAGACCTTTTGCAGCAGCTTCTGCCCAAGTTTAAAAAGAAAGCCAACAAACAACTAGAGGAGAAAAACAAGATGCTACAGGAGGATCCTGTGCTGTTTCAGCTGTATAAGGATTTGGTAGTGAGTCAGGTTATCAGTGCGGAGGAATTCTGGGCCAGTAGACTAAAGTTGAGTTCTGTAGAACACTCTTTGTCCAACAACAGCAAGCAGGAAGTGGGAATATCAGCAGCGTTCCTGGCAGACATTAGGCCACAGACAGATGGTTGTAATGGTTTAAAATACAACCTGACCTCTGACATCATCGAATCGATCTTCAAAACCTACCCTGCAGtcaaaCAGAAATACGCTGAAAATGTACCACACAACCTGACGGAGAAAGAGTTCTGGACACGATTCTTTCAATCACACTACTTCCACAGGGATCGCATCAACACTGGACAGCAGGATATCTTTTCAGAGTGTGCCAAGCAGGATGAAAAAGgtTTGAAGTCCATGGTTGTGCAAGGTGTTAAGAACCCTATGGTGGATCTGCTGTCACTGGAGGATAAAACGTTAGATGAGGGATATGGATCTTTAACAGTTGGCCCCAACTCAAGCAAAACAGTAAAGGAAAACAGCAACTCTGCCATCATTAAACGTTTCAACCATCACAGTGCCATGGTGCTGGCAGCCGGCCTACGCAAAGTAGATGCACCAAGTGACCAGGCCAGTGAGACCAGTAGCACTGATGGGAATTCGAGAGACTCCGACTTCTTCCAGCCACCAATTAAAAAGGTGAAATTGCAAGAGGCCATTGAGTATGAGGACTTGCAGAATGGGTCTGGGCCTAAAACTATTGCTTTGAATCTGAAGAAATCTGACAGgTATTCCCATGGGCCAGTTCCTTTGCAGTCCCATCATTACTCCACCAGTCAAGATATCATCAACTCAGTCAACTGCATTCAAGAAGAGATAAGCTGCTACAAACCCTGCCTTACTCGGGTGATGCCCAGCAGTGCAGCCAGTTCAGCTATCACAGCCCTCTCTCCTGGAGGATTACTAATGCAAGCTGGAACCCAACAGGCTGTCAGCCAATTGGTTCCCACTGATGTTCAGAGTGAACTGAAGCACTTGTATACAGCAGCAGGAGAGCTGCTACGGCACTTTTGgtcctgttttcctgtcaatACACCCTTCCTTGAGGAAAAGGTGGTTAAGATGCGGTCCAATCTAGAGAGATTCCAGTCAACTAAGCTCCGCCCCTTTCAAGAGAAGATCCAGAGGGAGTACTTAAGCACCAACCTGACGAGCCACTTGGACGAAATGATCCAGGCTGCTTATAACAAGTTCCATGCCTGGCAGACACGCCGTATGGCGAGGAAAACCTGATGAAAGAGAGACTGGACAAATTCACTTAAATGAGGAGTAATGACTATTGGGGAAAATGGAAAGAGGGCGAGGGAACTGGCTCTCCCTGTTAAGGTCGCTCTACCCAGAGTAAAAgtgtagagagagacaggccATCTGTGTTTAGATGGACAGGACTCATCTCTCCCTTCAGAATAGTCCATGTGGAGATGGACTACGCCAGTCACGAAACATGtagtttttccttttctcttattttgtttgtaatgttcaactttgtttttgctttttatttctcCTTTACTTTCAGTGGATGAGAAAACATGTCTGGCTTCTTTGTTCAGGATAGAAACAGACTTGTACTTTGACAGTGTTGAATTTTATGACCAAACTGTGGGCTTAATGATACCAGAGGAAATATTCTCAGGAACTAAAAATGTTCAATGCAAAGGATTCTGGAAGGtgagtttttttaatgatgcaCAGCAAAGGACTCAATGATAAGGAGGACTTCTTAAACCTTATGCCGTCAGTGCAAAGCAGTATGGTTCGGTGGAGACTTGGGTCTCACTGGATACCCAGAGGCCCTCGATAAGGAGGGTGTGTGAATAAagcaatactgtataaatactgtTTCTGTTGTGTATTACTGAATTGTATCCCATGCAGATACCTGACTGCACTGCTCTGTGTCTATTTTTACTGCACTGAAGACACAACTCTGTATGTTACTTCAAAATAAACTTATCAAGATTGCTACTGTACCCA

Function

symbol description
gtf2h1 Predicted to be involved in nucleic acid metabolic process and phosphorylation of RNA polymerase II C-terminal domain. Predicted to act upstream of or within nucleotide-excision repair and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH core complex and transcription factor TFIIH holo complex. Orthologous to human GTF2H1 (general transcription factor IIH subunit 1).

NR:

description
general transcription factor IIH subunit 1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG:

id description
K03141 TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235181.3 False 2599 mRNA 0.46 15 25236419 25246778
XM_015601852.2 False 2567 mRNA 0.45 15 25236421 25246778
XM_022672417.1 True 2609 mRNA 0.45 15 25236647 25246778

Neighbor

gene id symbol gene type direction distance location
LOC103044987 NA coding upstream 5518 25186625 ~ 25230901 (+)
hdac10 NA coding upstream 269472 24952825 ~ 24966947 (+)
LOC103025216 NA coding upstream 289733 24927013 ~ 24946686 (+)
LOC103024697 NA coding upstream 316969 24899036 ~ 24919450 (+)
LOC111193061 NA coding upstream 365053 24865790 ~ 24871366 (+)
hps5 hps5,LOC106584758 coding downstream 2852 25249630 ~ 25263215 (+)
LOC111193062 NA coding downstream 22900 25269678 ~ 25271254 (+)
LOC103045999 LOC108429466,LOC106561822 coding downstream 55457 25302235 ~ 25312163 (+)
LOC103027043 LOC108429467,LOC108275406 coding downstream 66513 25313291 ~ 25316315 (+)
LOC103046607 scamp2 coding downstream 80788 25327566 ~ 25346047 (+)
G76367 NA non-coding upstream 252028 24984152 ~ 24984391 (+)
G76349 NA non-coding upstream 313979 24921135 ~ 24922440 (+)
LOC111193114 NA non-coding upstream 525468 24566804 ~ 24710951 (+)
G76226 NA non-coding upstream 650287 24561664 ~ 24586132 (+)
G76225 NA non-coding upstream 673259 24527631 ~ 24563160 (+)
G76463 NA non-coding downstream 46627 25293405 ~ 25293928 (+)
G76468 NA non-coding downstream 70417 25317195 ~ 25318657 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding downstream 76615 25323393 ~ 25327069 (+)
G76505 neo1,LOC108275206 non-coding downstream 109486 25356264 ~ 25359567 (+)
G76514 neo1,LOC108275206 non-coding downstream 138509 25385287 ~ 25390947 (+)
G76423 NA other upstream 51687 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 231904 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 252705 24974941 ~ 24983714 (+)
G76358 NA other upstream 288270 24946788 ~ 24948149 (+)
LOC111193110 NA other upstream 337882 24873400 ~ 24898537 (+)
LOC103026466 LOC108429386,LOC108274988 other downstream 24478 25271256 ~ 25281371 (+)
G76464 NA other downstream 47723 25294501 ~ 25296468 (+)

Expression


Co-expression Network