hps5 (hps5,LOC106584758)


Basic Information

Item Value
gene id hps5
gene name hps5,LOC106584758
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25249630 ~ 25263215 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235182.3
CTGCTGCAGTCAGACTGGCAGGTTAAACTCCGCCGCAGCACAGACACAAGAGTCAACTGTCAGACATGGCTGAGCGAAACAACTCGAACAGGACTGAAATATGACTTAAACTGACCTGTACCTGAATTAGAAGgATGATTCCTGTATTGCCTGAGTCATACACCCATGTCTTGGCTGAGTTTGACTGTTTAGATCCCTTACTCTCTGCCCTTCGGCTGGACTCAGGCAGACTCAAGTGCACGTGCATTGCAATCTCAAGGAAATGGCTTGCCCTCGGCACCTCAGCTGGAGGGCTGCATCTCATCCAGAGAGACGGCTGGAAACAGAGACTCATCCTGACTCACAAGGAGGGCTCTATTACACAGGTAGCATGCTGCCCTCATGATGAAGACTTTATCGCCGTGGCAACAAGCGAGGGTCTTGTGGTGGTGTGGGAGCTGCAGTTGGAGCGGCGAGGGCGTCCTGAGCGTGCCTGTGTCTCTTGGGAGCACCGTGGCATGGCTATAACAGCTTTGTGCTGGGATACAGCAACTCTGCGTGTGTTTATTGGAGATACAGCCGGAAAAGTGTCCTGTCTACGTGCTGGATCGTCCAAACTTGGAAAGGGTTCAGCATTCGTGATCTTCCCAGTTCAGACTGTCACCACAGTAGACTCTCGTGTGGTGCAACTGGGATACCTGGAAGGCCGTTTGCTGGTTTCTTCACTAAGCCGCTGCTACCTCTGTGACAcagaaagGGAGAAGTTTTGGCGAGTGGGAAATAAGGAGCGTGATGGGGAATATGGAGCGTGCTTTTGCCCACAGCAGCAAACTGGGTTAAGAGGGTTGCCTGGAGCCACTGGCCACCTGCTGTACTGTGCTCGGCCAGGCTCACGTGTTTGGGAGGCCAATTTTAATGGAGAGGTGCTCAGTACTCATCAATTTAAACAGTTACTCGCTTGCCCTGCCTCACCTCTCATCTCGTACAAGGGGGAGCCTCAGTATATCCCAGATCAGAAGCATCCTCAGTCACTTGCCTTCCCTCGACTACTTAACTTTAGTGATCAAAACCTTCTGACATGGACAGACTCTGCCATCTATATCTTTACACCCCAGAGTGGACAGGTGTTGCTGTGGACCGAAATCAAAGGCATAGTAGATGTTGCAGTGTTCCGTAGTGAGCTGTTTTGTCTTCATGGCGATGGGCATTTGTCACACTTGTCATTGCTGCCTGCTGAGCGCTGTGTGGAGAGACTGATAAGGCGAGAGAACTGGACACTAGCTGCTACAGTCTGCTGCATGTTCCAGCATGCTATTGCATTATGCAGGGCAAGGAAGTCCATTCCTATTGACCGCCTGGAACACCTCAAGACCCAGCTTAACTCTACCTCCCAGCAGCAGCTGATTGTCCAGCTTGAGGAAGTTATCAGCAAGCTGGAGCCTCTAGACTCTGCATGCAGTAGCCGCAGGAGCAGCATATCTTCTCATGAAAGCTTCAGTGTGCTGGACTGTGGCATCTATCGCGTCATCAGCCGTAGAGGCAGCCAGTCAGATGAGGACACCAGCTCCCTCGTCAGCCAGTCGATGCTTGAGGAGGAGAGACTGAAAGAGTTTAACTTTGCTCAAGAGGAGGAGCAGGTGGAGCATGACTCTCAGTCATATGTGCGTGCCGAGGGGGATAAATCAGATCTTGGCCTGCAGTTTCATCTGCCACTCTCATTCCGTCCCAAACCACCACGCATCGCCCTGCAAGCTGTTAAAGACAGTGTCTCAAGCTTTGTGAAAAAGACCACAGAGAAGATCAACACTCTGCAAATGAACTCTGACCTTTGGACTCGACCAGACCATAGGGAGAGCGGACAGGGAGAAGTCATTGTCTCAGCTGGCCCTGTTCCTGATGAAGTGGACAACGAAGCGATTACGGAGCATGCAGAGAGCGATCTACAGGAGCTTAAATCGACAACAGAGAAAGCCATCTCACAGATACAGGACCCTCAAGTTCTTCTGGATCCAAGCTGTCTGACAGAGGTTCTTCTAGAGTGGGTCCCAGTTTTGGAGAGGGTCCTTGGTCCAGAGGAACATGCAGGCATAGAAAAGGAgaatgaagagaaaaagaacgAGAAGAAAATCGTCGAACCAGAAGATGAAAATGCAGACACCCAGTCTTCTTCCGCAGTTCCTCAGTCTGACAATGAAGTAGGATCTCTGACGGACAAAGACCACTCCTCTTCCTTAATGAAGGGAGAAGCCCTTACAGAGAGAAAGCTCAGTTCCACCCCTCCTCCTGTAGAGTTATCACCACCCTTACCAGCTCCAGTGAAACTTATTCACCGCCCTTTGCCCCCTGAACTTCAGGAACACCTCTCTCAGCTTGCCTGTCTGTACTTGGACCTGGGCTGCCCGAGTGGAGCAGGGGATGGGGTGGAGAGTGGGGTGGAGGATGTGTGTGCATTTCTTCAAAGGTACTTTTTCCTGCTGGACCAGGAGAGAGTGAGGAGGATGTGTATGTTGAGGTACAGAGAGCAGCCAGAGGTTCTGAAGGCCTACATTGCAGGCATGTTGGAGTTCACCCAAGGCAGCAAAGTGGTGGAAGTGATCCAGAAAGGAGACTTATTAAAGTCATTGCGCAGTCTAAGAGAGCTACAGCCCTGGAATGTTCCCCTGCTTCTTTCACACCTTTACAGACTGTATGCAAGGCATGGAGAGGTGGCTGTTCGTGCATACCCTCAGTTTTACCCTACAATCCTCCCTTCAGACATCATGGCTATGGTCCAACCCAGTCACTTTTTGCCTTACCTAGACAATCTGGTTCAGTCCCGAGCCGAGGAACAAAGACTCTCTTTCTTGGGATCACTCCTCCAGCCTGAGACACTGCAGCAAGATTGGCTGGAGCTGGCTCTTACCCATGATGCACCACAAAGAGAAGATACACTCACAGCTGATGGACAGCCAAAGTGGCGTTCTCACTACTTCTGCTGGGGCTATGGTCGTCTGCTATCATTACTGATTCGCCTGCCTGCTGACTTTGCTTCCAAAATGAAGATGCTGGAGTCATGTTGTCTACACGGGTACTGGGTAGGCTACTTGTACTTGTGCAATGAGCTGCAGCGCCGCACTGAGGCTTTTACTGCCATTTGCAAACTAGATGATATGAGTTTACTGGAGGAGCCCAATGGTACAGTTCCACAGACAGTGGAAGAGTGGATGTTATTGATTCGGCTTTGTCAGGAACACCACAACATCAGCCCCTCAGCTTCATCAATGTCACTTTCTTCATCACCTTCTTGTGGGAACACCTGTCTCGCCATCACAAATACAAGCAACGGCACCAGCACTAATAACAGCACAGGTAACACTAATGGCAAAAGCACTACTAGTGGACCTGGTGACCTAACCAACGGGTCTGCAGAATGGAGCACCCAGATCAGTGTGGAGAAGTTGATCCTGTGTCTGGCACGAGCTGTGGGGCCTGATCAGGCTTTAGCAGCGCTGCAGGAGGGTGGAGTGCAGTTGGAGCTCAGCCCTCACTCTACACTAGTGTGTGAACTTCTGAGAGTGGCGGAGAAGAGACAAAGAGCTCTGATTCAGACTATGCTGGAGCGGTGTGACCGATTCCTCTGGTCTCAACAGGCTTAATAGAGATTCTTCTTCCGTGGGTCTTCCAGCGTACTGCTTCCTTCGCCTTTCATCAAGACAATCTACAATTTCTACACTACAATCTGCCCTCTTACTCTAGGGATTATGGGTATTATTTAGCCTGGTCTAGATTCATGGGTTTCGTTGCATATCACTATACCAAAATTGGGATATAATGCTGCATTTCATTTGTCTCTAAAGTTTGCTGTTGGAGCTTGAAATAATGTCACACCCAGGTTGACTGTGTTACAGTTAAACATTAGTATTAATTGTTCACttgtttaaaacataaaaaaacactgtgacaCAGTGTAATGGCATGTTTTAAACCCAGAAGCCACATGATTTCTTTAGTAagagttctttttttatttattccccTGCAGACATAGCACAAATGTGTCTGATGGTATCCCTCATCTTAAGAGTTAGCCTAACCTTGCCTTTATCATTCCTTTCTGTATTAACCTACTTACTCTTGTTAAGCCTGATCTGGAATTGTCGGAATTGTGCCACAGTCATCCAGGGATTAGCTCAGAGTTAGCCAAGATAGTAATTATGCTTTATTAGTTGTTACATTATACTCTGCAGTACCAGCAGCTGACCTGCTAGGTACAGTAGTAGTTGGTTTAGGCTAACGGTGTCTAACAGTATTaacaatgtatttttgtttcatattgttttaatataatatatgcttagaattatttatctatttatatgcacctaagcttttttttcttaaaagatGTTAACGAATGTGAgccctaaaaacaaaaaaatatcaaaacattTCATATAATGTATCTGTCCATATGAAGATCAACATGAAAAATGTCTCCTTCAACTACAATTATAAGCCTTGTGGGTGACATGCTGCCTCATATGGCACAAAGGATTTTGCTATTGTTTAATTGTGTTAAAGATGATAATAAAGATGTCTTCCATCAAAATGA

Function

symbol description
hps5 Acts upstream of or within developmental pigmentation; notochord development; and regulation of compound eye pigmentation. Predicted to be located in cytoplasm. Predicted to be part of BLOC-2 complex. Is expressed in cranial ganglion; epidermis; neurons; notochord; and spinal cord. Used to study Hermansky-Pudlak syndrome and proteinuria. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 5. Orthologous to human HPS5 (HPS5 biogenesis of lysosomal organelles complex 2 subunit 2).

NR:

description
Hermansky-Pudlak syndrome 5 protein

GO:

id name namespace
GO:0048076 regulation of compound eye pigmentation biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K20191 HPS5; Hermansky-Pudlak syndrome 5 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235182.3 True 4570 mRNA 0.48 23 25249630 25263215

Neighbor

gene id symbol gene type direction distance location
gtf2h1 gtf2h1,LOC107572319 coding upstream 2852 25236419 ~ 25246778 (+)
LOC103044987 NA coding upstream 18729 25186625 ~ 25230901 (+)
hdac10 NA coding upstream 282683 24952825 ~ 24966947 (+)
LOC103025216 NA coding upstream 302944 24927013 ~ 24946686 (+)
LOC103024697 NA coding upstream 330180 24899036 ~ 24919450 (+)
LOC111193062 NA coding downstream 6463 25269678 ~ 25271254 (+)
LOC103045999 LOC108429466,LOC106561822 coding downstream 39020 25302235 ~ 25312163 (+)
LOC103027043 LOC108429467,LOC108275406 coding downstream 50076 25313291 ~ 25316315 (+)
LOC103046607 scamp2 coding downstream 64351 25327566 ~ 25346047 (+)
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding downstream 343572 25606787 ~ 25613446 (+)
G76367 NA non-coding upstream 265239 24984152 ~ 24984391 (+)
G76349 NA non-coding upstream 327190 24921135 ~ 24922440 (+)
LOC111193114 NA non-coding upstream 538679 24566804 ~ 24710951 (+)
G76226 NA non-coding upstream 663498 24561664 ~ 24586132 (+)
G76225 NA non-coding upstream 686470 24527631 ~ 24563160 (+)
G76463 NA non-coding downstream 30190 25293405 ~ 25293928 (+)
G76468 NA non-coding downstream 53980 25317195 ~ 25318657 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding downstream 60178 25323393 ~ 25327069 (+)
G76505 neo1,LOC108275206 non-coding downstream 93049 25356264 ~ 25359567 (+)
G76514 neo1,LOC108275206 non-coding downstream 122072 25385287 ~ 25390947 (+)
G76423 NA other upstream 64898 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 245115 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 265916 24974941 ~ 24983714 (+)
G76358 NA other upstream 301481 24946788 ~ 24948149 (+)
LOC111193110 NA other upstream 351093 24873400 ~ 24898537 (+)
LOC103026466 LOC108429386,LOC108274988 other downstream 8041 25271256 ~ 25281371 (+)
G76464 NA other downstream 31286 25294501 ~ 25296468 (+)

Expression


Co-expression Network