LOC103024275 (lrrc10b,LOC107754340)


Basic Information

Item Value
gene id LOC103024275
gene name lrrc10b,LOC107754340
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24706672 ~ 24710102 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235197.3
GCTCTGTTAAAAGCTCCTATTACTATTACAACTACTGCTacaattattactactactattactactattattactactactactactattactactactactaccactactacatGTTCCACAACTGCTAGTCTGCCATAGCATTTTGTGGTATGGGTCTCATCCATGTTCAAAGGCGGTGGTGTTCCATCGGGTGCTGACATCAGGCATTGGCGTCCTGGCTTGACTGAATTGCAGCGTCCCGCATCCGACGCATCATGAGTCCACGCACAGCATCTCTCTCTGCTGGGACGGACCTGCTGAGTGTAGCTCACAGAGAGGGGGCCAAGCAGCCCCACCGAGCTCCACACCCACTCCTCCCTGCGCCCTGAACCCCACACGTGCGCTCACAGACCTGCACCAcccctccacccacccacctgcGCACTCACAGGCTTCCAAACTGTGATACGCAAAGGAGGGGATGGGCAACTCGTCTCGAAAAGAAGGCGAGGAAGAAGGAGGGGAGGAGgggaaagacaaagaaaaggaGGAGGATGGAGAAAAGGAGGAGGAAAAAGCACCAAAGGTGGAAAAAGAGGAGGCTGAGGATGTTGAGCTGCCCTTAGGTGTGGACGAACTTCTTGCCAGTGGAGACCCCGTGCTGGACCTGAGCTACTACAAGTTTCGCCGCCTCCCTAGGCAGGTGCTGGGCCTAGAGTATCTGGAGAAGCTGTACTTGTGCGGGAACCGCCTGCGGACACTGCCCGATGGAATCTCGCAGCTGCAGGGCCTGCGCATCCTGGCACTGGACTTCAACAAAATAGATGACGTACCCCTGGCCGTGTGCCAGCTGGCCAACCTCACTCGCCTGTACCTTGGCAGCAATCGGCTAATGAGCCTGCCGCCGGACATTAGGAACCTGCAGAGTCTGCGCTGCCTGTGGGTGGAGAGCAACTACTTCCAACGCTTCCCCAAGCAGCTTTACGACCTGCCCCACCTGCGCTCACTACAGATAGGTGACAATCGGTTGCGCACCCTGCCCTCTGACCTGTGGCGCATGGAGGCGCTGCGGGGCCTATGGCTTTATGGCAATCGTTTTGAGGAGTTTCCTCGGGTGCTTCTGAAGATGGAGCAACTGGAGATCCTGGACCTAGACCGCAATCGCATTTCTGAGTTCCCAAGCCTGCTGCACCTTCCTGCCCTCCGGCTCTTCTCCTACGACCACAACCCCGTAAAGGGGCCTCCACGTGTCGGGGAGGAGGTGATGATCGTTGGGGAAGGGGCAGAAGAAGCCCTTCAAACCAGGGAAAGAAGAAAGGAAGCAAAGGAGAGAGCGCAGAGGGAAGCGGAGGAGGCCGCCGCTGCCGCAGCAGCTGCTCCGGTCATTATTGGAATACTGAAGAAACTTAGGATGAGTAGCAGCTCTTTGGCAGCAGCAAGTGATACAGCAGCAGCAAATGGGACAGTTCCATCAGCACCTTCAGCTGAGGATGAGGTGGGATTAGAGGCAAAAGAGGAAGAGGGGGAGCCTGAAAGGCCTACAGTAGCACTTGAAGAAGCCGTACTTGAATACGAGGAGGAGGGGCTGGAGTATGAGAGGGAGGAGCTTATATGCGAGGGTGAGGGGTATGAAGGGTATGGAGGGGCAGAGTTAGAGTATGAGAGAGCTGATATGGACTATGAATATGAAGGGGAGGAACCTGAGTAAGAAGAAGAAGCATGATCATTGACtttaaaccctttaaactcTTAGAAGCTTAAATTGGTTTGCACTAATTTGATTTGGGTTTTTTCAAAAACATTAGTTTTCCAGGTTTCACAGTGTTTTATTGCAAAGAACTTGGCTAAAGCATGAAGTGTGAAAAATTCTAATCTGGACTATTGCACACACAACAGTTCCAACAGCATCATGTTCTTAGTTGGTCTGTGCTGGTTACAGAATCTGCTTATTCAAGTAACTGGAagtacttttttctttactttgtttttttttcctccacaaAGCATTTACATTCCTTTTCTTCTGATTTGTGTCATTGTTAACATTCCATTTACCTTGGAAGTTGGATGTCAGATCTGGGAAAGACATCACACTTGAGTTGCCAGCACTCCAATTAAACATTCAGATAACTGTTCCATTCAGCTTACCACAATTGGTTTCAAAGGTTTGCATTGCCCCAGGTTGGCATTGTTAGCCATTTCAGTTGATAAGCAGTATTTTGCATATCCAAAAGCCATGAAAACAGGCAAAGAAGTTGGACAGTACTGGCTGTCAATAAAACGAATAATACTACAGCTGTTCACTAAAACACACTGCTTAAGGACTGTCATACCAGTCATTCAGAACCTTTAAATAGATGTGTtttgcaaatgttttaaaacagtgtacAATTAACAGAATTTTTAACTGAAACACTGTCAACTTTGGTGTGATGTCCATCCCAGCATCAAAATCTCACATCTGACATGAATGCAACACAGCTTTTATCTTTGTGAAATTATATAACATAACAGGGCACTTAAGTGAACATTACGGTTATAATACATTGACACGTTTTGCCACAAATTAAGTAACATAGAAGTAATTAGGAACAAAGAACCAAACTGAAGGTCAAGCCATTTTTACTACTTAGCCTGAAATTTTCTTGTCTGAGACTATTTACCTGATGTCCAGTTGTATAAGGGCTGAAATATGACACTGTTTTTCAGAGCTGCTTAGTCCGATATGTGACACCTTGTGACAAGTTGAGGATGTTCTAAAATGTTTAGCATAGCATATGAATACAAGCTTAGCTacttgttgaatagcacacgaTGGTCCAAATCCCCCCTTATTATGTATCATCTTTGGTAATCAGTGTTCTGGTACCACTCCAAAGTtcagttttcttagttttttctttGAGTCATCTGTTGGATTGTGTGTAAGTTTTGAGAAAGACATTTTTCAAAATAGCCATAATtgtaaaacactgtgaaaatggaaaaaaatgtttttgagaatgttttttctttaacgcAAAAGGACAGGTGAGGGGATTTTTTGAAAAAAGACTATATTGTGAAGTATGCTGTAAAGGGGTGAAATGCTCTATCAAGGCTGCTGTGAATTTTTCTATAACAATGTCTCCAGTAGTGAGACAGAACCAGTACAAGACTCTTACCAACCGGTTGAGCAATTAATTTATTCTCTTAAAAAAACCCTGTGAAAACCAATGAAACTGCACATTTGTTATGAGCTGCAGCTTTATATATTATGAGTAAGACTCATACTTTTTgagaatgtgtgtatgtgtgtctggcATGCATGGGtgtgagagaaagcgagagagtgtgtgtaattttACTCCTCCCCGGGTGTACTGTATCTGGAATAGGATACTGCGATTGCTGTGATGTGTGTGGGTGAAACGAAATCTTCTCTCATTAAATAATCATTGAGTTTGCGA

Function

symbol description
lrrc10b Orthologous to human LRRC10B (leucine rich repeat containing 10B).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 10B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235197.3 True 3431 mRNA 0.45 1 24706672 24710102

Neighbor

gene id symbol gene type direction distance location
pnpla2 LOC108432691 coding downstream 370450 24322366 ~ 24336222 (-)
LOC103030184 LOC108432690,LOC108274702 coding downstream 385868 24279477 ~ 24320804 (-)
pgghg pgghg coding downstream 432473 24262747 ~ 24274199 (-)
LOC111193112 NA coding downstream 518470 24184569 ~ 24188202 (-)
LOC103025218 NA coding downstream 526025 24157139 ~ 24180647 (-)
eps8l2 eps8l2 coding upstream 32667 24742769 ~ 24788358 (-)
LOC107197705 NA coding upstream 238942 24949044 ~ 24950022 (-)
LOC103023960 kiaa1644,LOC108274641 coding upstream 303191 25013293 ~ 25101100 (-)
mpi mpi,LOC106560745,LOC106584640 coding upstream 607024 25317126 ~ 25327553 (-)
LOC103047119 neo1,LOC108275206 coding upstream 641423 25351525 ~ 25561947 (-)
G76274 NA non-coding downstream 47380 24633827 ~ 24659292 (-)
G76272 NA non-coding downstream 167985 24528071 ~ 24538687 (-)
G76266 NA non-coding downstream 304959 24395212 ~ 24401713 (-)
G76247 NA non-coding downstream 427584 24278840 ~ 24279088 (-)
LOC111193111 NA non-coding downstream 516359 24188344 ~ 24190313 (-)
G76288 NA non-coding upstream 5108 24715210 ~ 24715538 (-)
G76292 NA non-coding upstream 17209 24727311 ~ 24736269 (-)
G76340 NA non-coding upstream 135939 24846041 ~ 24860482 (-)
G76372 NA non-coding upstream 182059 24892161 ~ 24892392 (-)
G76376 NA non-coding upstream 211071 24921173 ~ 24922447 (-)
deaf1 deaf1,LOC107726848 other downstream 446142 24240898 ~ 24260530 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 873604 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 1340456 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 2132659 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 3433655 21269504 ~ 21273017 (-)
LOC103025724 tmem80 other upstream 81090 24791192 ~ 24798616 (-)
G76377 NA other upstream 204196 24914298 ~ 24920365 (-)
G76424 NA other upstream 474107 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 572687 25282789 ~ 25301768 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 2146527 26856629 ~ 26878862 (-)

Expression


Co-expression Network