LOC103026470 (LOC108435611)


Basic Information

Item Value
gene id LOC103026470
gene name LOC108435611
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4447172 ~ 4462972 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236447.3
GCTCAGCTGAAGGACAGTGCTGTGAGCTGCGGGGCTGAGGAAGCAGCTGTGGCCGGATCAGCTGAGGCTGAGATGAGCGACAGAGGATCGGGGAGTTTGGGCGATTAGAAGAGACGAATGGAGGCGTGATGCGGGAGAATGATCTCTGGATCCTGTAGCAGGAGCTCTGTGatTGTCGTCCCAGCAGCCTAgaagacagaaacacacacttctGTCTCGCAGAGTGTGTGTGACGAGATGGAGCAAGGCGTGGTGGACAGTCCTGTCATCCTGGTCATTAAAGCACCGGATCAGAAGTATGATGACCAGACCATCAACTGTTTTCTGAACTGGACGGTGGAGAAACTGAAGAGGCACCTTTCCAAGGTTTATCCGAGCAAACCTCGCTCGAAGGATCAGAGGCTGGTGTATTCTGGAAAGCTCCTCCAGGATCACTGTAAACTCAGAGACGTGCTCAGAAAGCAGGATGAGTTCCACATGCTGCACTTGGTTTGTGCTTCACGCAGCCCACCTCCGTCCCCCACCACACACAGAAGAAACAGCAACAAGAAACAGCCCACAAATACCGACAACTCTGGAAGTCCCGCCCCTGCTGATAACACCCTGTCTGCTTCTTCAGGAGAAACTCCCAATAGGCTGACCCAGAATTCAGGTCCCATCCATAATCACCCATCTGCACAGGGGTATGCATGGAACCAGTGGTTGGCCCAGCAGGGACCCAACGCGAGTATGCCACACTACCCAATGTACAACCCCATGACTCTGCTCTGGTGGCAACAGCTCTACGCCTGGAATTACCACATGAACTATCAAACCTGGTCCAGCTCACACAGACCACCGCAGCAGCAGCCCACGCCCCCTTCAGTCGACCCTCCAAGAGAGGGACGGGCACCTGTCCGAGACCACCCTCAGGATGCTCCAGTCGGGGAGGGGCAGAACGAGGAGGATCTGAACCGTGATTGGCTGGACTGGGTGTACACAGCGTCCCGAGCTGTGATTCTCCTCAGCATAGTGTATTTCTATTCGTCCTTCAGTCGTTTCATCATGGTGACTGGAGGCATGCTGCTGCTCTACCTGCATCAGGCTGGCTGGCTTCCCTTTAACCTGGAGAATGAGCTCCAGGACCTTGCTGACCCGGCCAATCACGATGAGCTGAATGCAGACAATCCAAATGACCCACAAGACATGGAGAGGCTGGCAGATGACGGCGAGGAAGACGACGAGCAGCAAGGAGACATTACTGACGACGATGCCGAGAGAGGGATGAACATGGGCTTTTTATCTTCTGCCTGGTCTTTCATCACCACGTTCTTCGCCTCCCTCATTCCTGAGGGCATCCCCAACGCAGTGAACTGACCCAGACCACAGCCCCACCTCCAACACGCCCGATCCGCTCTTCCTCACTTCTACTGTCCTTTAATACCAAACCGACAAGCACTTCAACATGAGAAGAGCACGAGAGCTTACCTGGAATCTGGAGGCAGGTCTGTGTGAAGAGAGGTGCTGAACAAAACATCCAGTACACGTGCAGTATTTCAGAGAGAGCTGTGAGTTTGTATTGTGTGTACACTTTGAAGAAACGTGTGATGCAGCTGTAGGACTGTTCTTAAACTATAAACCGCTGGGATTCCCAATGCCCCTCGCTGGACTGGAGACTTTTGGGTCCCTTGTAACATTTTAGTCATCATGTAAGCTCATTTTAAAGGACTAGATCGG

Function

NR:

description
PREDICTED: homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236447.3 True 1716 mRNA 0.53 9 4447172 4462972

Neighbor

gene id symbol gene type direction distance location
LOC103042532 LOC108442489 coding downstream 536643 3862118 ~ 3910529 (-)
LOC103024174 LOC108442487 coding downstream 938176 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 1039741 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 1100696 3336209 ~ 3346476 (-)
rnf139 rnf139,LOC106569923 coding downstream 1111386 3323898 ~ 3335786 (-)
LOC103041488 NA coding upstream 495133 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 498617 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 551900 5014872 ~ 5046137 (-)
nudcd2 nudcd2 coding upstream 667630 5130602 ~ 5137613 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 948744 5411716 ~ 5422882 (-)
G71183 LOC108435610 non-coding downstream 8998 4432591 ~ 4438174 (-)
G71164 NA non-coding downstream 106867 4339546 ~ 4340305 (-)
G71156 NA non-coding downstream 113217 4327071 ~ 4333955 (-)
G71153 NA non-coding downstream 137151 4306701 ~ 4310021 (-)
G71081 NA non-coding downstream 230526 4167386 ~ 4216646 (-)
G71202 NA non-coding upstream 159048 4622020 ~ 4622306 (-)
G71205 NA non-coding upstream 206450 4669422 ~ 4669678 (-)
G71210 NA non-coding upstream 215419 4678391 ~ 4678749 (-)
G71222 NA non-coding upstream 232770 4695742 ~ 4742513 (-)
G71237 NA non-coding upstream 423216 4886188 ~ 4886461 (-)
G71175 NA other downstream 34161 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 598548 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 743421 3575561 ~ 3703751 (-)
LOC111193045 LOC108442482,LOC102793828 other downstream 988362 3444095 ~ 3458810 (-)
G70924 ndufb9 other downstream 1093573 3280156 ~ 3353599 (-)
G71235 NA other upstream 419198 4882170 ~ 4884488 (-)
trnaw-cca_42 NA other upstream 461028 4924000 ~ 4924071 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 1008694 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 1366649 5829621 ~ 5841707 (-)
G71771 NA other upstream 2314267 6777239 ~ 6824756 (-)

Expression


Co-expression Network