LOC103042240 (LOC103042240)


Basic Information

Item Value
gene id LOC103042240
gene name LOC103042240
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 867909 ~ 877404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239720.3
CCTGACCATCAGATACCCACCCTCATCTCCACACTGCTTCTCCCAGAGCTCTCAGCACCTGCTGGATTTCTACCTGCAGAGGAACCTACTGAACACCTGCCTTCATCATGAACAAGGTCCTGTGGGCAGTGCTGGCCGTGGCCGCGCTCTTCGTCGCCGctgaTGGGCTGAACTGTTACACGTGTTCGGTGGGAATTCTGGGAAGGTGCTTCTTCAGCAGCTCACAGACCTGCACCGGAAACAACACCAGCTGCTTCACAGCGACAGCAGCATTCAACCTGTCTGGTGCCATGAACTTCTACACCAGTGGCTGCACCCTCCCCACCAGCTGCAACAGCTCCTCCGGCAGCGTCCTGGGCGTCGGCTACACCGTCACCCAGTCCTGCTGCACCACCAACCTCTGCAACGGAGCCAGCAGCATCCAGCTGCCCATCACCGCAGCTATCGGCGCCGCCCTGCTGGCCACCACCTGGAGCTTCATGTAGAAGATCTCCAGCTTAACTTCTTGTTCTATCAAACGAGCCGTTTCCAGTCCCAGTCCCGGGGAACCGTGTTCTACTATCGAATTTAGCACGTTTACATTAGCATTAATGCTAGTAGAGCCTAGTAGAACATGCTGTCCACAGGACTGGGGTTAGGAACCGTTAAGATGCTGTAAGTGAGCGACTATGGAAGGATGTAAAAGATGAAGTTTCTAAAAGCTTGAATTTGTACACTTAACTATACGTATATATTAACTTTTATCTATTTCGCTTTTCGATTGCTAAGACGAGAGCACTTTACCCCGTCTCAGGGCTTCTGTAGGGAACAGTGTGTCTCTGATGCAATAACTAATTTTTGTGTTGTTAATATTTCTTTCCAAACAAACCTCTGAAAAGAGGTGTGTTTAAAAGTATTTCTTGAATAAAACTAttctattttaacaaaaaaatgaa

Function

NR:

description
sperm acrosome membrane-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239720.3 True 935 mRNA 0.49 3 867909 877404

Neighbor

gene id symbol gene type direction distance location
LOC103036550 NA coding upstream 89903 640691 ~ 778006 (+)
LOC111193065 NA coding upstream 457687 404610 ~ 410222 (+)
LOC103044001 NA coding upstream 590712 257979 ~ 277197 (+)
LOC103044287 NA coding upstream 621913 228631 ~ 245996 (+)
LOC107197271 NA coding upstream 644412 203641 ~ 223497 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding downstream 22490 899894 ~ 912522 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding downstream 80016 957420 ~ 972843 (+)
gpx3 LOC108415088 coding downstream 1813334 2690738 ~ 2701134 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding downstream 1951005 2828409 ~ 2854104 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding downstream 1980491 2857895 ~ 2866216 (+)
G70345 NA non-coding upstream 86172 741336 ~ 781737 (+)
G70355 NA non-coding upstream 98142 768928 ~ 769767 (+)
G70351 NA non-coding upstream 165423 700571 ~ 702486 (+)
G70330 NA non-coding upstream 336934 502689 ~ 530975 (+)
G70328 NA non-coding upstream 375325 492343 ~ 492584 (+)
G70361 NA non-coding downstream 35649 913053 ~ 914183 (+)
G70372 NA non-coding downstream 73503 950907 ~ 957398 (+)
G70373 NA non-coding downstream 95486 972890 ~ 974277 (+)
G70374 rps5,LOC107086176 non-coding downstream 101159 978563 ~ 1019860 (+)
G70379 NA non-coding downstream 107341 984745 ~ 985851 (+)
LOC111193067 NA other upstream 12751 845025 ~ 855158 (+)
LOC103042548 NA other upstream 27695 794712 ~ 840214 (+)
LOC111193042 NA other upstream 546973 317331 ~ 320936 (+)
G70385 NA other downstream 128079 1005483 ~ 1005838 (+)
G70522 NA other downstream 391363 1268767 ~ 1269404 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other downstream 1211516 2088920 ~ 2193559 (+)
G70604 LOC108436838 other downstream 1481479 2358883 ~ 2359229 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 2244514 3121918 ~ 3292475 (+)

Expression


Co-expression Network